Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8344379.1

Orthogroup ID

OG0005682

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 980

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8344379.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 665 bp

atggtatgggacaaactgagatcaagctcatttgagtttgatgaggatatgattgaatctcttttcggatacaatctacaaaacacaatgaagaatgatgaaggaaaaagcaagacaccttctccgagcaagcatgtgcttgagccaaagagactacagaacataaccatactttcaaaagccctgaatgctactacagagcaagtatgtgaagcactagtacaaggaagtggattgtgtttacaacaacttgaagcacttgcgaagatggagccaaccagtgaagaagtggctaagctttctggctataaaggagatatcaaggaactgggatcagttgagaagtttgttaaggcagtgcttaacgttcctttcgcctttcagcgagttgaagccatgctttacagagaaacttttgaagatgaggtggttcatcttaggaactcgttttcagtcctagaggaggcctgcaaggaactcagatcaagcaggctgttcttgaagttacttgaagccgtgttgaaaacaggcaaccggatgaatgtgggaactatcagaggaggtgctagagcattcaagctagatgcgcttctcaaacttgctgatgtgaaaggaactgatggaaagactaccttgttacactttgtggtgcaagaaataataag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0008092

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

221

Amino Acids

24.75

Weight (kDa)

6.36

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05470
fragaria_vesca	FvH4_6g06480
malus_domestica	MD04G1201400.v1.1 MD12G1215100.v1.1
prunus_persica	Prupe.6G321600_v2.0.a1
pyrus_communis	pycom04g17740 pycom04g17750 pycom15g25860
rosa_chinensis	RchiOBHm_Chr3g0455601
rosa_laevigata	RLG00000025349
rosa_multiflora	Rmu_co8344379.1_g000001 Rmu_co8353267.1_g000001 Rmu_sc0000220.1_g000003 Rmu_sc0000223.1_g000001 Rmu_sc0005164.1_g000004 Rmu_sc0021585.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423690 Rroxscaffold_6G00424180
rosa_rugosa	Rorug03G0008600 Rorug03G0008600
rosa_samantha	Rh2AG197000 Rh2DG204900 Rh3AG067900 Rh3BG070500 Rh3CG068800 Rh3DG070400 Rh7DG489800
rosa_wichuraiana	Rw3G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	366
AclWI	GGATC	1 cut(s)	340
AdeI	CACNNNGTG	1 cut(s)	646
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	463
AgsI	TTSAA	9 cut(s)	56, 177, 254, 392, 419, 502, 512, 523, 577
AhlI	ACTAGT	1 cut(s)	217
AluBI	AGCT	3 cut(s)	27, 298, 580
AluI	AGCT	3 cut(s)	27, 298, 580
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	589
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
BccI	CCATC	2 cut(s)	262, 614
BceAI	ACGGC	1 cut(s)	500
BciVI	GTATCC	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	145
BcuI	ACTAGT	1 cut(s)	217
BfaI	CTAG	4 cut(s)	218, 458, 567, 581
BfmI	CTRYAG	2 cut(s)	155, 195
BfuI	GTATCC	1 cut(s)	62
BlpI	GCTNAGC	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	273
BmrI	ACTGGG	1 cut(s)	338
BmsI	GCATC	1 cut(s)	574
BmuI	ACTGGG	1 cut(s)	338
Bpu1102I	GCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	161
BsaWI	WCCGGW	1 cut(s)	534
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
Bse1I	ACTGG	2 cut(s)	279, 333
BseGI	GGATG	1 cut(s)	543
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseMII	CTCAG	2 cut(s)	8, 493
BseNI	ACTGG	2 cut(s)	279, 333
BseRI	GAGGAG	2 cut(s)	476, 573
BshFI	GGCC	1 cut(s)	467
BsiSI	CCGG	1 cut(s)	535
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	463
BsmAI	GTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	23
BsmI	GAATGC	2 cut(s)	193, 572
BsnI	GGCC	1 cut(s)	467
Bsp143I	GATC	3 cut(s)	20, 332, 482
Bsp1720I	GCTNAGC	1 cut(s)	294
BspANI	GGCC	1 cut(s)	467
BspCNI	CTCAG	2 cut(s)	9, 492
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	340
BsrI	ACTGG	2 cut(s)	279, 333
BssMI	GATC	3 cut(s)	20, 332, 482
BstC8I	GCNNGC	3 cut(s)	131, 469, 491
BstDEI	CTNAG	4 cut(s)	17, 294, 437, 479
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstF5I	GGATG	1 cut(s)	543
BstHHI	GCGC	1 cut(s)	589
BstKTI	GATC	3 cut(s)	23, 335, 485
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	3 cut(s)	20, 332, 482
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 586
BstNSI	RCATGY	1 cut(s)	137
BstSFI	CTRYAG	2 cut(s)	155, 195
BsuI	GTATCC	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	467
BtsCI	GGATG	1 cut(s)	543
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	2 cut(s)	286, 363
Cac8I	GCNNGC	3 cut(s)	131, 469, 491
CfoI	GCGC	1 cut(s)	589
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	2 cut(s)	134, 397
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	4 cut(s)	17, 294, 437, 479
DpnI	GATC	3 cut(s)	22, 334, 484
DpnII	GATC	3 cut(s)	20, 332, 482
DraIII	CACNNNGTG	1 cut(s)	646
Eco147I	AGGCCT	1 cut(s)	467
Eco32I	GATATC	1 cut(s)	319
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoRV	GATATC	1 cut(s)	319
FaeI	CATG	2 cut(s)	137, 400
FaiI	YATR	8 cut(s)	7, 50, 135, 164, 170, 208, 309, 398
FalI	AAGNNNNNCTT	4 cut(s)	384, 416, 617, 649
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	2 cut(s)	133, 396
FokI	GGATG	1 cut(s)	550
FspBI	CTAG	4 cut(s)	218, 458, 567, 581
GlaI	GCGC	1 cut(s)	588
HaeIII	GGCC	1 cut(s)	467
HapII	CCGG	1 cut(s)	535
HhaI	GCGC	1 cut(s)	589
Hin1II	CATG	2 cut(s)	137, 400
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	535
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	4 cut(s)	68, 126, 482, 557
Hpy188III	TCNNGA	1 cut(s)	499
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	95, 129
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	2 cut(s)	471, 652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 586
HpyF3I	CTNAG	4 cut(s)	17, 294, 437, 479
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	137, 400
HspAI	GCGC	1 cut(s)	587
Kzo9I	GATC	3 cut(s)	20, 332, 482
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	8 cut(s)	197, 288, 292, 314, 475, 481, 513, 548
LweI	GCATC	1 cut(s)	574
MaeI	CTAG	4 cut(s)	218, 458, 567, 581
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	2 cut(s)	504, 636
MalI	GATC	3 cut(s)	22, 334, 484
MboI	GATC	3 cut(s)	20, 332, 482
MboII	GAAGA	4 cut(s)	103, 277, 296, 431
MnlI	CCTC	6 cut(s)	37, 418, 454, 457, 551, 554
MseI	TTAA	2 cut(s)	351, 363
MspI	CCGG	1 cut(s)	535
Mva1269I	GAATGC	2 cut(s)	193, 572
MwoI	GCNNNNNNNGC	2 cut(s)	188, 586
NdeII	GATC	3 cut(s)	20, 332, 482
NlaIII	CATG	2 cut(s)	137, 400
NlaIV	GGNNCC	1 cut(s)	273
NspI	RCATGY	1 cut(s)	137
PceI	AGGCCT	1 cut(s)	467
PctI	GAATGC	2 cut(s)	193, 572
PfeI	GAWTC	1 cut(s)	56
Psp1406I	AACGTT	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	273
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	351, 363
Sau3AI	GATC	3 cut(s)	20, 332, 482
SetI	ASST	8 cut(s)	29, 121, 300, 369, 429, 565, 582, 635
SfaNI	GCATC	1 cut(s)	574
SfcI	CTRYAG	2 cut(s)	155, 195
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
SpeI	ACTAGT	1 cut(s)	217
SseBI	AGGCCT	1 cut(s)	467
SspMI	CTAG	4 cut(s)	218, 458, 567, 581
StuI	AGGCCT	1 cut(s)	467
TaiI	ACGT	1 cut(s)	369
TatI	WGTACW	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	351, 363
Tru9I	TTAA	2 cut(s)	351, 363
TscAI	CASTG	2 cut(s)	286, 363
TspDTI	ATGAA	4 cut(s)	104, 114, 422, 554
TspRI	CASTG	2 cut(s)	286, 363
XagI	CCTNNNNNAGG	1 cut(s)	461
XceI	RCATGY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XspI	CTAG	4 cut(s)	218, 458, 567, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.