Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021585.1

Orthogroup ID

OG0005682

Physical Location & Seq

Genomic Coordinates Forward (+)

71 .. 565

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021585.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgggtaggatcagccagaaaaacaaaatcaagacagttgaagagaaggaagaagattatagaagaatggggctagacctcgtctctggtctcagcactgaactctacaatgcaaagaagacggctacattggatttggatgttcttgcaagtggtgtgtcaaacctatctgatggaatgaccaaactgaagcatttgataaatgaagaattggccatggaagagaaaagtgggaacttggtgagttccatgaagtctttcataagctatgcagagaagagtttaaaagagttgcagggtgatgagaatagagtgctgtcacatgtgaaggagattaccgagtactttcatggaaatgtgagcaaagaagaagcaaacccacttagaatttttgtgattgttagagactttttgggaatgttagaccatgtctgtaaagagctcagaagctcaaaagccagccgctctccaaatcctcttgctccattcagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0008092

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

164

Amino Acids

18.49

Weight (kDa)

6.92

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05470
fragaria_vesca	FvH4_6g06480
malus_domestica	MD04G1201400.v1.1 MD12G1215100.v1.1
prunus_persica	Prupe.6G321600_v2.0.a1
pyrus_communis	pycom04g17740 pycom04g17750 pycom15g25860
rosa_chinensis	RchiOBHm_Chr3g0455601
rosa_laevigata	RLG00000025349
rosa_multiflora	Rmu_co8344379.1_g000001 Rmu_co8353267.1_g000001 Rmu_sc0000220.1_g000003 Rmu_sc0000223.1_g000001 Rmu_sc0005164.1_g000004 Rmu_sc0021585.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423690 Rroxscaffold_6G00424180
rosa_rugosa	Rorug03G0008600 Rorug03G0008600
rosa_samantha	Rh2AG197000 Rh2DG204900 Rh3AG067900 Rh3BG070500 Rh3CG068800 Rh3DG070400 Rh7DG489800
rosa_wichuraiana	Rw3G005450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	465
AciI	CCGC	1 cut(s)	463
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	387
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	1 cut(s)	344
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	41
AluBI	AGCT	3 cut(s)	267, 442, 450
AluI	AGCT	3 cut(s)	267, 442, 450
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	3 cut(s)	88, 95, 399
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	1 cut(s)	213
ApoI	RAATTY	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	253, 311
BalI	TGGCCA	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	444
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	444
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	138
BcoDI	GTCTC	3 cut(s)	88, 95, 399
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	1 cut(s)	463
BlsI	GCNGC	1 cut(s)	464
BmcAI	AGTACT	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	106, 457
BshFI	GGCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	444
BsmAI	GTCTC	3 cut(s)	88, 95, 399
BsmBI	CGTCTC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	215
Bso31I	GGTCTC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	1 cut(s)	9
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	1 cut(s)	463
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	2 cut(s)	105, 456
BspPI	GGATC	1 cut(s)	17
BspTNI	GGTCTC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	465
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	3 cut(s)	36, 216, 272
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	3 cut(s)	92, 383, 443
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	3 cut(s)	88, 95, 399
BstMBI	GATC	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	5 cut(s)	217, 250, 323, 350, 428
CviJI	RGCY	9 cut(s)	15, 73, 125, 215, 267, 442, 450, 458, 462
CviKI_1	RGCY	9 cut(s)	15, 73, 125, 215, 267, 442, 450, 458, 462
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	3 cut(s)	92, 383, 443
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
DraI	TTTAAA	1 cut(s)	285
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	3 cut(s)	36, 216, 272
EarI	CTCTTC	3 cut(s)	36, 216, 272
Ecl136II	GAGCTC	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	444
Eco31I	GGTCTC	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	5 cut(s)	220, 253, 326, 353, 431
FaiI	YATR	8 cut(s)	60, 218, 251, 263, 270, 324, 351, 429
FatI	CATG	5 cut(s)	216, 249, 322, 349, 427
Fnu4HI	GCNGC	1 cut(s)	463
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	1 cut(s)	463
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	1 cut(s)	463
HaeIII	GGCC	1 cut(s)	215
Hin1II	CATG	5 cut(s)	220, 253, 326, 353, 431
HphI	GGTGA	2 cut(s)	253, 311
Hpy188I	TCNGA	3 cut(s)	172, 446, 491
Hpy188III	TCNNGA	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	40, 322
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	4 cut(s)	113, 149, 272, 295
HpyF3I	CTNAG	3 cut(s)	92, 383, 443
Hsp92II	CATG	5 cut(s)	220, 253, 326, 353, 431
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	487
LpnPI	CCDG	4 cut(s)	29, 72, 281, 472
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	318
MalI	GATC	1 cut(s)	11
MbiI	CCGCTC	1 cut(s)	465
MboI	GATC	1 cut(s)	9
MboII	GAAGA	9 cut(s)	53, 62, 65, 75, 130, 218, 233, 289, 380
MhlI	GDGCHC	1 cut(s)	444
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	2 cut(s)	209, 387
MluNI	TGGCCA	1 cut(s)	215
MnlI	CCTC	2 cut(s)	89, 486
Mox20I	TGGCCA	1 cut(s)	215
MroXI	GAANNNNTTC	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	1 cut(s)	284
MslI	CAYNNNNRTG	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	5 cut(s)	220, 253, 326, 353, 431
NmuCI	GTSAC	1 cut(s)	318
NspI	RCATGY	1 cut(s)	326
PciI	ACATGT	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	257
PflFI	GACNNNGTC	2 cut(s)	80, 428
PkrI	GCNGC	1 cut(s)	464
PscI	ACATGT	1 cut(s)	322
Psp124BI	GAGCTC	1 cut(s)	444
PsyI	GACNNNGTC	2 cut(s)	80, 428
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	354
SacI	GAGCTC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	1 cut(s)	463
Sau3AI	GATC	1 cut(s)	9
ScaI	AGTACT	1 cut(s)	344
SduI	GDGCHC	1 cut(s)	444
SetI	ASST	5 cut(s)	81, 168, 269, 444, 452
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	2 cut(s)	209, 387
SsiI	CCGC	1 cut(s)	463
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	37
TasI	AATT	2 cut(s)	209, 387
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	1 cut(s)	465
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	318
Tsp45I	GTSAC	1 cut(s)	318
TspDTI	ATGAA	4 cut(s)	219, 250, 266, 338
TspRI	CASTG	1 cut(s)	103
Tth111I	GACNNNGTC	2 cut(s)	80, 428
XapI	RAATTY	1 cut(s)	387
XceI	RCATGY	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	1 cut(s)	74
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.