Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0014833

Physical Location & Seq

Genomic Coordinates Reverse (-)

20230485 .. 20235587

Gene Structure 5103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTGCATAACCATAATGAATTTAAAACTTTTTGTGAGAATTAAGAAAAAATTTTTCGTGCTTCGTGTTCATCTTAAGCATCTCAGTCCCTTGAACCCAGTTGTAGCAGAAGCAAAAACCACCAATCCAGATCGTGCCACGTCAATCAATGGCAGACCAGGGTTGCTTCAAACGACTGGTCCAATGAAACTACTCCCTGCCGGTTTCTTGTGCATGACTGATGTGGCAAAATCTCAGCCGTTAACTGTGGTTTCATCAACTGCCAAGCCATCCCAGAACATCACCGTTGATCATCACCCAAAAGATGACGACAAGAAGATCAGAGGGACGGTGGTGTTAATGAAGAAGAATGTTTTGGAGCTCAACGACCTCAAAGCTTCATTTCTTGATCGTTTCCATGAGCTGCGGGGTAAAAAAGTTTCACTGCAGCTCATTAGTTCTGTTAATTGTGACCCTGAAAATGGATTGCAAGGAAAAGTTGGAAAGGCAGCGTATTTGGAAGATTGGATTACCAAAATCACTCCTTTAACAGCAGAGGAGAATGCATTTGACATTACTTTCGATTGGGACGAGGAGATTGGAGTCCCGGGAGCATTCATAATTAGAAATGAGCATCACAGTGAGTTCTACTTGAAGTCTCTCACACTCGAAGATGTTCCTGGCGAAGGTCGAGTCCACTTTGTTTGCAACTCATGGGTGTACCCTGCTAAAAAGTACAAAAAGGACCGTGTTTTCTTTGCTAACAAGACGTATCTTTCAAGTGATACACCAGTGCCATTACAGAAGTTCAGAGAAGAAGAGCTCGAAAACTTGAGAGGAGACGACGATGATGAAAAAAGAGAGCTTGAGGAATGGGACAGAGTTTATGGCTATGCCTACTACAATGATTTGGGGAAACCAGATAAGGGCCCAGAATATGCGCGTCCAATTCTCGGAGGGTCTAGTGAGTTTCCTTATCCTCGCAGAGGAAGAACCGGAAGACAGGCAACTGAAAAAGTGAGAGCCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00591 map00591

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

337

Amino Acids

38.2

Weight (kDa)

8.65

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014833)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g18070 pycom12g20360
rosa_chinensis	RchiOBHm_Chr6g0308121
rosa_laevigata	RLG00000030699
rosa_multiflora	Rmu_co8122894.1_g000001 Rmu_co8435975.1_g000001 Rmu_sc0005706.1_g000003 Rmu_sc0024733.1_g000003
rosa_roxburghii	Rroxscaffold_7G00160520
rosa_rugosa	Rorug06G0364300 Rorug06G0364300 Rorug06G0364300
rosa_samantha	Rh1BG012800 Rh1DG012900 Rh6AG472900 Rh6BG484100 Rh6CG489000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	922
AciI	CCGC	1 cut(s)	406
AcsI	RAATTY	2 cut(s)	19, 50
AfaI	GTAC	2 cut(s)	701, 716
AfiI	CCNNNNNNNGG	5 cut(s)	461, 665, 905, 932, 965
AflII	CTTAAG	1 cut(s)	74
AgsI	TTSAA	4 cut(s)	94, 170, 634, 759
AjiI	CACGTC	1 cut(s)	141
AjnI	CCWGG	2 cut(s)	157, 658
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	6 cut(s)	361, 377, 403, 430, 802, 844
AluI	AGCT	6 cut(s)	361, 377, 403, 430, 802, 844
Alw21I	GWGCWC	2 cut(s)	363, 804
Alw26I	GTCTC	2 cut(s)	642, 813
Ama87I	CYCGRG	1 cut(s)	586
AoxI	GGCC	1 cut(s)	907
ApaI	GGGCCC	1 cut(s)	911
ApeKI	GCWGC	3 cut(s)	403, 427, 488
ApoI	RAATTY	2 cut(s)	19, 50
ArsI	GACNNNNNNTTYG	6 cut(s)	163, 195, 542, 574, 657, 689
Asp700I	GAANNNNTTC	1 cut(s)	654
AspLEI	GCGC	1 cut(s)	922
AspS9I	GGNCC	4 cut(s)	179, 724, 907, 908
AsuC2I	CCSGG	2 cut(s)	587, 588
AsuHPI	GGTGA	2 cut(s)	274, 287
AvaI	CYCGRG	1 cut(s)	586
AvaII	GGWCC	2 cut(s)	179, 724
BaeGI	GKGCMC	1 cut(s)	911
BaeI	ACNNNNGTAYC	2 cut(s)	756, 789
BanII	GRGCYC	4 cut(s)	363, 804, 911, 1006
BbsI	GAAGAC	1 cut(s)	985
Bbv12I	GWGCWC	2 cut(s)	363, 804
BbvI	GCAGC	3 cut(s)	390, 439, 500
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	2 cut(s)	159, 660
BclI	TGATCA	1 cut(s)	289
BcnI	CCSGG	2 cut(s)	587, 588
BcoDI	GTCTC	2 cut(s)	642, 813
BfaI	CTAG	1 cut(s)	942
BfmI	CTRYAG	1 cut(s)	425
BfrI	CTTAAG	1 cut(s)	74
BisI	GCNGC	3 cut(s)	404, 428, 489
BlsI	GCNGC	3 cut(s)	405, 429, 490
Bme1390I	CCNGG	4 cut(s)	159, 587, 588, 660
Bme18I	GGWCC	2 cut(s)	179, 724
BmeT110I	CYCGRG	1 cut(s)	586
BmgBI	CACGTC	1 cut(s)	141
BmgT120I	GGNCC	4 cut(s)	179, 724, 907, 908
BmiI	GGNNCC	1 cut(s)	909
BmrFI	CCNGG	4 cut(s)	159, 587, 588, 660
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	88, 622
BmuI	ACTGGG	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	985
BpuEI	CTTGAG	2 cut(s)	832, 866
BpuMI	CCSGG	2 cut(s)	587, 588
BsaJI	CCNNGG	2 cut(s)	158, 586
BsaWI	WCCGGW	1 cut(s)	974
Bsc4I	CCNNNNNNNGG	5 cut(s)	461, 665, 905, 932, 965
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	3 cut(s)	98, 181, 770
BseBI	CCWGG	2 cut(s)	159, 660
BseDI	CCNNGG	2 cut(s)	158, 586
BseGI	GGATG	1 cut(s)	269
BseLI	CCNNNNNNNGG	5 cut(s)	461, 665, 905, 932, 965
BseMII	CTCAG	2 cut(s)	97, 248
BseNI	ACTGG	3 cut(s)	98, 181, 770
BseRI	GAGGAG	3 cut(s)	551, 587, 831
BseSI	GKGCMC	1 cut(s)	911
BseXI	GCAGC	3 cut(s)	390, 439, 500
Bsh1236I	CGCG	1 cut(s)	922
BshFI	GGCC	1 cut(s)	909
BsiHKAI	GWGCWC	2 cut(s)	363, 804
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	3 cut(s)	201, 587, 975
BslFI	GGGAC	5 cut(s)	72, 340, 569, 581, 869
BslI	CCNNNNNNNGG	5 cut(s)	461, 665, 905, 932, 965
BsmAI	GTCTC	2 cut(s)	642, 813
BsmBI	CGTCTC	1 cut(s)	813
BsmFI	GGGAC	5 cut(s)	72, 340, 569, 581, 869
BsmI	GAATGC	2 cut(s)	547, 593
BsnI	GGCC	1 cut(s)	909
BsoBI	CYCGRG	1 cut(s)	586
Bsp120I	GGGCCC	1 cut(s)	907
Bsp1286I	GDGCHC	4 cut(s)	363, 804, 911, 1006
Bsp143I	GATC	4 cut(s)	130, 289, 318, 388
BspACI	CCGC	1 cut(s)	406
BspANI	GGCC	1 cut(s)	909
BspCNI	CTCAG	2 cut(s)	96, 247
BspFNI	CGCG	1 cut(s)	922
BspLI	GGNNCC	1 cut(s)	909
BspMAI	CTGCAG	1 cut(s)	429
BspQI	GCTCTTC	1 cut(s)	792
BspTI	CTTAAG	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	3 cut(s)	98, 181, 770
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	158, 586
BssMI	GATC	4 cut(s)	130, 289, 318, 388
Bst2UI	CCWGG	2 cut(s)	159, 660
Bst4CI	ACNGT	5 cut(s)	247, 286, 331, 620, 728
Bst6I	CTCTTC	1 cut(s)	792
BstAFI	CTTAAG	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	83, 234
BstENI	CCTNNNNNAGG	2 cut(s)	663, 963
BstF5I	GGATG	1 cut(s)	269
BstFNI	CGCG	1 cut(s)	922
BstHHI	GCGC	1 cut(s)	922
BstKTI	GATC	4 cut(s)	133, 292, 321, 391
BstMAI	GTCTC	2 cut(s)	642, 813
BstMBI	GATC	4 cut(s)	130, 289, 318, 388
BstNI	CCWGG	2 cut(s)	159, 660
BstSCI	CCNGG	4 cut(s)	157, 585, 586, 658
BstSFI	CTRYAG	1 cut(s)	425
BstSLI	GKGCMC	1 cut(s)	911
BstUI	CGCG	1 cut(s)	922
BstV1I	GCAGC	3 cut(s)	390, 439, 500
BstV2I	GAAGAC	1 cut(s)	985
BsuRI	GGCC	1 cut(s)	909
BtrI	CACGTC	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	269
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	3 cut(s)	422, 625, 777
CfoI	GCGC	1 cut(s)	922
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	4 cut(s)	179, 724, 907, 908
Cfr9I	CCCGGG	1 cut(s)	586
CseI	GACGC	1 cut(s)	911
Csp6I	GTAC	2 cut(s)	700, 715
CspCI	CAANNNNNGTGG	2 cut(s)	665, 700
CviAII	CATG	4 cut(s)	214, 398, 693, 1008
CviQI	GTAC	2 cut(s)	700, 715
DdeI	CTNAG	2 cut(s)	83, 234
DpnI	GATC	4 cut(s)	132, 291, 320, 390
DpnII	GATC	4 cut(s)	130, 289, 318, 388
DraI	TTTAAA	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	792
EarI	CTCTTC	1 cut(s)	792
Ecl136II	GAGCTC	2 cut(s)	361, 802
Eco24I	GRGCYC	4 cut(s)	363, 804, 911, 1006
Eco47I	GGWCC	2 cut(s)	179, 724
Eco53kI	GAGCTC	2 cut(s)	361, 802
Eco88I	CYCGRG	1 cut(s)	586
EcoICRI	GAGCTC	2 cut(s)	361, 802
EcoNI	CCTNNNNNAGG	2 cut(s)	663, 963
EcoO109I	RGGNCCY	1 cut(s)	907
EcoRII	CCWGG	2 cut(s)	157, 658
EcoT22I	ATGCAT	1 cut(s)	547
EcoT38I	GRGCYC	4 cut(s)	363, 804, 911, 1006
Esp3I	CGTCTC	1 cut(s)	813
FaeI	CATG	4 cut(s)	217, 401, 696, 1011
FaqI	GGGAC	5 cut(s)	72, 340, 569, 581, 869
FatI	CATG	4 cut(s)	213, 397, 692, 1007
FauI	CCCGC	1 cut(s)	399
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	3 cut(s)	404, 428, 489
FokI	GGATG	1 cut(s)	256
FriOI	GRGCYC	4 cut(s)	363, 804, 911, 1006
Fsp4HI	GCNGC	3 cut(s)	404, 428, 489
FspBI	CTAG	1 cut(s)	942
GlaI	GCGC	1 cut(s)	921
GluI	GCNGC	3 cut(s)	404, 428, 489
HaeIII	GGCC	1 cut(s)	909
HapII	CCGG	3 cut(s)	201, 587, 975
HgaI	GACGC	1 cut(s)	911
HhaI	GCGC	1 cut(s)	922
Hin1II	CATG	4 cut(s)	217, 401, 696, 1011
Hin6I	GCGC	1 cut(s)	920
HinP1I	GCGC	1 cut(s)	920
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	2 cut(s)	582, 672
HpaI	GTTAAC	1 cut(s)	243
HpaII	CCGG	3 cut(s)	201, 587, 975
HphI	GGTGA	2 cut(s)	274, 287
Hpy166II	GTNNAC	3 cut(s)	243, 676, 700
Hpy188I	TCNGA	3 cut(s)	323, 791, 935
Hpy188III	TCNNGA	2 cut(s)	128, 386
Hpy8I	GTNNAC	3 cut(s)	243, 676, 700
Hpy99I	CGWCG	1 cut(s)	827
HpyAV	CCTTC	1 cut(s)	659
HpyCH4III	ACNGT	5 cut(s)	247, 286, 331, 620, 728
HpyCH4IV	ACGT	2 cut(s)	140, 749
HpyCH4V	TGCA	6 cut(s)	6, 213, 427, 469, 545, 687
HpyF3I	CTNAG	2 cut(s)	83, 234
HpySE526I	ACGT	2 cut(s)	140, 749
Hsp92II	CATG	4 cut(s)	217, 401, 696, 1011
HspAI	GCGC	1 cut(s)	920
Ksp22I	TGATCA	1 cut(s)	289
KspAI	GTTAAC	1 cut(s)	243
Kzo9I	GATC	4 cut(s)	130, 289, 318, 388
LguI	GCTCTTC	1 cut(s)	792
LmnI	GCTCC	2 cut(s)	358, 590
Lsp1109I	GCAGC	3 cut(s)	390, 439, 500
LweI	GCATC	2 cut(s)	88, 622
MaeI	CTAG	1 cut(s)	942
MaeII	ACGT	2 cut(s)	140, 749
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	4 cut(s)	132, 291, 320, 390
MboI	GATC	4 cut(s)	130, 289, 318, 388
MboII	GAAGA	9 cut(s)	328, 355, 358, 512, 662, 806, 809, 981, 990
MhlI	GDGCHC	4 cut(s)	363, 804, 911, 1006
MluCI	AATT	6 cut(s)	19, 39, 50, 445, 600, 927
MlyI	GAGTC	2 cut(s)	591, 681
MmeI	TCCRAC	1 cut(s)	460
MnlI	CCTC	9 cut(s)	317, 380, 529, 565, 809, 841, 929, 959, 969
Mph1103I	ATGCAT	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	7 cut(s)	23, 42, 75, 242, 338, 444, 527
MslI	CAYNNNNRTG	1 cut(s)	618
MspCI	CTTAAG	1 cut(s)	74
MspI	CCGG	3 cut(s)	201, 587, 975
MspR9I	CCNGG	4 cut(s)	159, 587, 588, 660
Mva1269I	GAATGC	2 cut(s)	547, 593
MvaI	CCWGG	2 cut(s)	159, 660
MvnI	CGCG	1 cut(s)	922
NciI	CCSGG	2 cut(s)	587, 588
NdeII	GATC	4 cut(s)	130, 289, 318, 388
NlaIII	CATG	4 cut(s)	217, 401, 696, 1011
NlaIV	GGNNCC	1 cut(s)	909
NmuCI	GTSAC	1 cut(s)	449
NsiI	ATGCAT	1 cut(s)	547
PciSI	GCTCTTC	1 cut(s)	792
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PctI	GAATGC	2 cut(s)	547, 593
PdmI	GAANNNNTTC	1 cut(s)	654
PkrI	GCNGC	3 cut(s)	405, 429, 490
PleI	GAGTC	2 cut(s)	590, 680
PpsI	GAGTC	2 cut(s)	590, 680
Psp124BI	GAGCTC	2 cut(s)	363, 804
Psp6I	CCWGG	2 cut(s)	157, 658
PspGI	CCWGG	2 cut(s)	157, 658
PspN4I	GGNNCC	1 cut(s)	909
PspOMI	GGGCCC	1 cut(s)	907
PspPI	GGNCC	4 cut(s)	179, 724, 907, 908
PstI	CTGCAG	1 cut(s)	429
RsaI	GTAC	2 cut(s)	701, 716
RsaNI	GTAC	2 cut(s)	700, 715
RseI	CAYNNNNRTG	1 cut(s)	618
SacI	GAGCTC	2 cut(s)	363, 804
SapI	GCTCTTC	1 cut(s)	792
SaqAI	TTAA	7 cut(s)	23, 42, 75, 242, 338, 444, 527
SatI	GCNGC	3 cut(s)	404, 428, 489
Sau3AI	GATC	4 cut(s)	130, 289, 318, 388
Sau96I	GGNCC	4 cut(s)	179, 724, 907, 908
SchI	GAGTC	2 cut(s)	591, 681
ScrFI	CCNGG	4 cut(s)	159, 587, 588, 660
SduI	GDGCHC	4 cut(s)	363, 804, 911, 1006
SfaNI	GCATC	2 cut(s)	88, 622
SfcI	CTRYAG	1 cut(s)	425
SinI	GGWCC	2 cut(s)	179, 724
SmaI	CCCGGG	1 cut(s)	588
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	3 cut(s)	74, 811, 845
SmoI	CTYRAG	3 cut(s)	74, 811, 845
Sse9I	AATT	6 cut(s)	19, 39, 50, 445, 600, 927
SsiI	CCGC	1 cut(s)	406
SspMI	CTAG	1 cut(s)	942
SstI	GAGCTC	2 cut(s)	363, 804
StyD4I	CCNGG	4 cut(s)	157, 585, 586, 658
TaaI	ACNGT	5 cut(s)	247, 286, 331, 620, 728
TaiI	ACGT	2 cut(s)	143, 752
TaqI	TCGA	4 cut(s)	561, 648, 670, 804
TasI	AATT	6 cut(s)	19, 39, 50, 445, 600, 927
TatI	WGTACW	1 cut(s)	714
Tru1I	TTAA	7 cut(s)	23, 42, 75, 242, 338, 444, 527
Tru9I	TTAA	7 cut(s)	23, 42, 75, 242, 338, 444, 527
TscAI	CASTG	3 cut(s)	429, 625, 777
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	3 cut(s)	403, 427, 488
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	8 cut(s)	32, 59, 200, 243, 356, 369, 586, 846
TspMI	CCCGGG	1 cut(s)	586
TspRI	CASTG	3 cut(s)	429, 625, 777
Vha464I	CTTAAG	1 cut(s)	74
VpaK11BI	GGWCC	2 cut(s)	179, 724
XagI	CCTNNNNNAGG	2 cut(s)	663, 963
XapI	RAATTY	2 cut(s)	19, 50
XmaI	CCCGGG	1 cut(s)	586
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	1 cut(s)	942
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.