Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0014833

Physical Location & Seq

Genomic Coordinates Forward (+)

65682743 .. 65687524

Gene Structure 4782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG489000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTTCCGAATATACAAGATGTTCCAAACCCATGGTTCCAACAAAAAGATCAAAGGAACCGTGGTGCTGATGAAGAAGAATTTTTTTGACTTCAATGACTTTAATGCTTCGGTTCTCGATCGTGTGAAGGAGTTTTTGGGCCGACGAGTTTCTTTGCAGCTCATTAGTGCTGTTAATGGTGATTCTTCAAATGAATCGCAAGGGAAACTCGGAAAATTAGCATATTTGGAGAAGTGGATTACCATAATCAGTCCGTTAACAGCAGGGGGAGAGACTAAATTCATGGTTAGCTTTGACGTTGAAGGCGAAATAGGAGTTCCAGGAGCATTCTTAATAAGAAACAATCATCACAGTGAGTTCTTCCTTAAGACGGTCACACTCGAAGATGTTCCCGGTGCGGGTCAGATCCACTTTTTTTGCAACTCATGGGTCTACCCTGCATCCAAATACAAGAAAGACCGTATTTTATTTGCTAACAAGACGTATCTTCCGAGTGATACACCATTGGCACTACGCAAATACAGACAACAGGAGCTTGAGCAGTTGAGAGGAAATGGAACAGGAGAGCTAAACGAATGGGAGAGGGTCTACGACTATGCTTACTACAATGATCTCGGTGACCCAGACAGCGGTTCCCACTATGCCCGTCCAGTTCTTGGAGGGTCTAGCCAGTATCCTTACCCTCGTAGAGGAAGAACTGGTCGACCACCAACAAGGACAGGTGGTCCGATCGTCGGAGACTCATGGACCTCCAAGAAGCAGAAGAAGCTCACCCGCACCGCCGATGAAGACCTCGAGTCAAAGCTCGGTTTCGATCTATTCTCCGAACGTGAAACTAGGCTCGGCTTTCACAACGGTAAATTGCTCTTCCATTTCTGCTGGATAATTTGGGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0044424 GO:0044464 GO:0051213 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

299

Amino Acids

34.21

Weight (kDa)

9.27

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAT	PF01477	52 - 157	8.2e-20	PLAT/LH2 domain
Lipoxygenase	PF00305	171 - 241	8.4e-31	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014833)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g18070 pycom12g20360
rosa_chinensis	RchiOBHm_Chr6g0308121
rosa_laevigata	RLG00000030699
rosa_multiflora	Rmu_co8122894.1_g000001 Rmu_co8435975.1_g000001 Rmu_sc0005706.1_g000003 Rmu_sc0024733.1_g000003
rosa_roxburghii	Rroxscaffold_7G00160520
rosa_rugosa	Rorug06G0364300 Rorug06G0364300 Rorug06G0364300
rosa_samantha	Rh1BG012800 Rh1DG012900 Rh6AG472900 Rh6BG484100 Rh6CG489000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	656
AccI	GTMKAC	3 cut(s)	432, 588, 703
AciI	CCGC	4 cut(s)	398, 630, 775, 780
AclWI	GGATC	1 cut(s)	400
AcsI	RAATTY	2 cut(s)	79, 278
AfiI	CCNNNNNNNGG	6 cut(s)	370, 398, 629, 656, 689, 734
AflII	CTTAAG	1 cut(s)	365
AgsI	TTSAA	3 cut(s)	94, 189, 302
AhdI	GACNNNNNGTC	2 cut(s)	723, 796
AjnI	CCWGG	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	6 cut(s)	160, 291, 535, 568, 769, 805
AluI	AGCT	6 cut(s)	160, 291, 535, 568, 769, 805
Alw26I	GTCTC	2 cut(s)	266, 732
AlwI	GGATC	1 cut(s)	400
Ama87I	CYCGRG	1 cut(s)	794
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	157
ApoI	RAATTY	2 cut(s)	79, 278
Asp700I	GAANNNNTTC	1 cut(s)	387
AspS9I	GGNCC	3 cut(s)	139, 725, 747
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	3 cut(s)	191, 629, 763
AvaI	CYCGRG	1 cut(s)	794
AvaII	GGWCC	2 cut(s)	725, 747
BbsI	GAAGAC	1 cut(s)	795
BbvI	GCAGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	321
BciVI	GTATCC	1 cut(s)	684
BcnI	CCSGG	1 cut(s)	393
BcoDI	GTCTC	2 cut(s)	266, 732
BfaI	CTAG	2 cut(s)	666, 837
BfrI	CTTAAG	1 cut(s)	365
BfuI	GTATCC	1 cut(s)	684
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
Bme1390I	CCNGG	2 cut(s)	321, 393
Bme18I	GGWCC	2 cut(s)	725, 747
BmeRI	GACNNNNNGTC	2 cut(s)	723, 796
BmeT110I	CYCGRG	1 cut(s)	794
BmgT120I	GGNCC	3 cut(s)	139, 725, 747
BmiI	GGNNCC	3 cut(s)	37, 58, 634
BmrFI	CCNGG	2 cut(s)	321, 393
BmsI	GCATC	1 cut(s)	449
BpiI	GAAGAC	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	31, 60
Bsc4I	CCNNNNNNNGG	6 cut(s)	370, 398, 629, 656, 689, 734
Bse1I	ACTGG	3 cut(s)	650, 670, 703
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	31, 60
BseGI	GGATG	1 cut(s)	440
BseLI	CCNNNNNNNGG	6 cut(s)	370, 398, 629, 656, 689, 734
BseNI	ACTGG	3 cut(s)	650, 670, 703
BseXI	GCAGC	1 cut(s)	169
Bsh1285I	CGRYCG	2 cut(s)	121, 732
BshFI	GGCC	1 cut(s)	141
BsiEI	CGRYCG	2 cut(s)	121, 732
BsiHKCI	CYCGRG	1 cut(s)	794
BsiSI	CCGG	1 cut(s)	393
BslI	CCNNNNNNNGG	6 cut(s)	370, 398, 629, 656, 689, 734
BsmAI	GTCTC	2 cut(s)	266, 732
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	794
Bsp143I	GATC	6 cut(s)	48, 118, 405, 610, 729, 814
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	4 cut(s)	398, 630, 775, 780
BspANI	GGCC	1 cut(s)	141
BspLI	GGNNCC	3 cut(s)	37, 58, 634
BspPI	GGATC	1 cut(s)	400
BspQI	GCTCTTC	1 cut(s)	872
BspTI	CTTAAG	1 cut(s)	365
BsrI	ACTGG	3 cut(s)	650, 670, 703
BssECI	CCNNGG	2 cut(s)	31, 60
BssMI	GATC	6 cut(s)	48, 118, 405, 610, 729, 814
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	5 cut(s)	61, 353, 373, 461, 857
Bst6I	CTCTTC	1 cut(s)	872
BstAFI	CTTAAG	1 cut(s)	365
BstDSI	CCRYGG	2 cut(s)	31, 60
BstEII	GGTNACC	1 cut(s)	617
BstENI	CCTNNNNNAGG	1 cut(s)	687
BstF5I	GGATG	1 cut(s)	440
BstKTI	GATC	6 cut(s)	51, 121, 408, 613, 732, 817
BstMAI	GTCTC	2 cut(s)	266, 732
BstMBI	GATC	6 cut(s)	48, 118, 405, 610, 729, 814
BstMCI	CGRYCG	2 cut(s)	121, 732
BstMWI	GCNNNNNNNGC	1 cut(s)	766
BstNI	CCWGG	1 cut(s)	321
BstPI	GGTNACC	1 cut(s)	617
BstSCI	CCNGG	2 cut(s)	319, 391
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	795
BstX2I	RGATCY	1 cut(s)	405
BstXI	CCANNNNNNTGG	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	1 cut(s)	141
BtgI	CCRYGG	2 cut(s)	31, 60
BtsCI	GGATG	1 cut(s)	440
BtsIMutI	CAGTG	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	139, 725, 747
CspCI	CAANNNNNGTGG	2 cut(s)	398, 433
CviAII	CATG	4 cut(s)	32, 283, 426, 744
DpnI	GATC	6 cut(s)	50, 120, 407, 612, 731, 816
DpnII	GATC	6 cut(s)	48, 118, 405, 610, 729, 814
DriI	GACNNNNNGTC	2 cut(s)	723, 796
Eam1104I	CTCTTC	1 cut(s)	872
Eam1105I	GACNNNNNGTC	2 cut(s)	723, 796
EarI	CTCTTC	1 cut(s)	872
Eco130I	CCWWGG	1 cut(s)	31
Eco47I	GGWCC	2 cut(s)	725, 747
Eco88I	CYCGRG	1 cut(s)	794
Eco91I	GGTNACC	1 cut(s)	617
EcoNI	CCTNNNNNAGG	1 cut(s)	687
EcoO65I	GGTNACC	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	4 cut(s)	35, 286, 429, 747
FaiI	YATR	9 cut(s)	13, 33, 223, 245, 284, 427, 597, 642, 745
FatI	CATG	4 cut(s)	31, 282, 425, 743
FauI	CCCGC	2 cut(s)	391, 782
FblI	GTMKAC	3 cut(s)	432, 588, 703
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	1 cut(s)	427
Fsp4HI	GCNGC	1 cut(s)	158
FspBI	CTAG	2 cut(s)	666, 837
GluI	GCNGC	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	1 cut(s)	393
Hin1II	CATG	4 cut(s)	35, 286, 429, 747
HincII	GTYRAC	2 cut(s)	258, 704
HindII	GTYRAC	2 cut(s)	258, 704
HinfI	GANTC	4 cut(s)	182, 194, 740, 797
HpaI	GTTAAC	1 cut(s)	258
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	3 cut(s)	191, 629, 763
Hpy166II	GTNNAC	4 cut(s)	258, 433, 589, 704
Hpy188I	TCNGA	7 cut(s)	8, 212, 405, 492, 729, 737, 826
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	4 cut(s)	258, 433, 589, 704
Hpy99I	CGWCG	2 cut(s)	147, 737
HpyAV	CCTTC	2 cut(s)	121, 296
HpyCH4III	ACNGT	5 cut(s)	61, 353, 373, 461, 857
HpyCH4IV	ACGT	3 cut(s)	297, 482, 829
HpyCH4V	TGCA	3 cut(s)	157, 420, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	766
HpySE526I	ACGT	3 cut(s)	297, 482, 829
Hsp92II	CATG	4 cut(s)	35, 286, 429, 747
KspAI	GTTAAC	1 cut(s)	258
Kzo9I	GATC	6 cut(s)	48, 118, 405, 610, 729, 814
LguI	GCTCTTC	1 cut(s)	872
LmnI	GCTCC	2 cut(s)	323, 532
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	449
MaeI	CTAG	2 cut(s)	666, 837
MaeII	ACGT	3 cut(s)	297, 482, 829
MaeIII	GTNAC	2 cut(s)	373, 617
MalI	GATC	6 cut(s)	50, 120, 407, 612, 731, 816
MboI	GATC	6 cut(s)	48, 118, 405, 610, 729, 814
MflI	RGATCY	1 cut(s)	405
MluCI	AATT	5 cut(s)	79, 215, 278, 860, 885
MlyI	GAGTC	2 cut(s)	734, 806
MmeI	TCCRAC	2 cut(s)	63, 715
MnlI	CCTC	7 cut(s)	542, 576, 653, 683, 693, 760, 803
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	5 cut(s)	102, 174, 257, 332, 366
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	630
MspCI	CTTAAG	1 cut(s)	365
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	2 cut(s)	321, 393
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	766
NciI	CCSGG	1 cut(s)	393
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	6 cut(s)	48, 118, 405, 610, 729, 814
NlaIII	CATG	4 cut(s)	35, 286, 429, 747
NlaIV	GGNNCC	3 cut(s)	37, 58, 634
NmeAIII	GCCGAG	1 cut(s)	822
NmuCI	GTSAC	2 cut(s)	373, 617
PaeR7I	CTCGAG	1 cut(s)	794
PciSI	GCTCTTC	1 cut(s)	872
PcsI	WCGNNNNNNNCGW	2 cut(s)	303, 488
PctI	GAATGC	1 cut(s)	326
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	182, 194
PflMI	CCANNNNNTGG	1 cut(s)	656
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	159
Ple19I	CGATCG	2 cut(s)	121, 732
PleI	GAGTC	2 cut(s)	734, 805
PpsI	GAGTC	2 cut(s)	734, 805
Psp6I	CCWGG	1 cut(s)	319
PspEI	GGTNACC	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	3 cut(s)	37, 58, 634
PspPI	GGNCC	3 cut(s)	139, 725, 747
PspXI	VCTCGAGB	1 cut(s)	794
PsuI	RGATCY	1 cut(s)	405
PvuI	CGATCG	2 cut(s)	121, 732
RseI	CAYNNNNRTG	1 cut(s)	351
SalI	GTCGAC	1 cut(s)	702
SapI	GCTCTTC	1 cut(s)	872
SaqAI	TTAA	5 cut(s)	102, 174, 257, 332, 366
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	6 cut(s)	48, 118, 405, 610, 729, 814
Sau96I	GGNCC	3 cut(s)	139, 725, 747
SchI	GAGTC	2 cut(s)	734, 806
ScrFI	CCNGG	2 cut(s)	321, 393
SfaNI	GCATC	1 cut(s)	449
Sfr274I	CTCGAG	1 cut(s)	794
SinI	GGWCC	2 cut(s)	725, 747
SlaI	CTCGAG	1 cut(s)	794
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	3 cut(s)	365, 536, 794
SmoI	CTYRAG	3 cut(s)	365, 536, 794
Sse9I	AATT	5 cut(s)	79, 215, 278, 860, 885
SsiI	CCGC	4 cut(s)	398, 630, 775, 780
SspMI	CTAG	2 cut(s)	666, 837
StyD4I	CCNGG	2 cut(s)	319, 391
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	5 cut(s)	61, 353, 373, 461, 857
TaiI	ACGT	3 cut(s)	300, 485, 832
TaqI	TCGA	5 cut(s)	117, 381, 703, 795, 813
TasI	AATT	5 cut(s)	79, 215, 278, 860, 885
TfiI	GAWTC	2 cut(s)	182, 194
Tru1I	TTAA	5 cut(s)	102, 174, 257, 332, 366
Tru9I	TTAA	5 cut(s)	102, 174, 257, 332, 366
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	2 cut(s)	373, 617
TseI	GCWGC	1 cut(s)	157
Tsp45I	GTSAC	2 cut(s)	373, 617
TspDTI	ATGAA	4 cut(s)	86, 207, 271, 801
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	358
Van91I	CCANNNNNTGG	1 cut(s)	656
Vha464I	CTTAAG	1 cut(s)	365
VpaK11BI	GGWCC	2 cut(s)	725, 747
XagI	CCTNNNNNAGG	1 cut(s)	687
XapI	RAATTY	2 cut(s)	79, 278
XhoI	CTCGAG	1 cut(s)	794
XmiI	GTMKAC	3 cut(s)	432, 588, 703
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	2 cut(s)	666, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.