Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0014833

Physical Location & Seq

Genomic Coordinates Forward (+)

2119367 .. 2120305

Gene Structure 939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG012900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAGATGCTACCTACCATCGGAGACACCATCTGGGTTGAAGACGCTAAGAGAAACTGAGCTGCAATATTTGAGAGGAGATGGAGAGGGCGAAAGAGAAACATGGGATAGGATTTACGATTATGATAAATATAATCATCTTGGAGACCCAGATAAGAAAAAGGAACTGGCTAGGCCTGTCCTTGGCGGCAAAGAGCACCCCGACCCTAGGCGCTGCAGAACAGGACGTCCCCACACTAAAAAAAAGTCATTGTCGGAACAAAAGAACAGTAGTGTGTATGTACCAAGAGATGAATCCTTCTCGGAGTTGAAACAAGTGACATTTTTGGGAAGGGCAGTTAAATCTGTGAGCCACGCTGATGGGATCAATCCCAATCCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

127

Amino Acids

14.59

Weight (kDa)

9.07

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	12 - 119	6.2e-42	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014833)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g18070 pycom12g20360
rosa_chinensis	RchiOBHm_Chr6g0308121
rosa_laevigata	RLG00000030699
rosa_multiflora	Rmu_co8122894.1_g000001 Rmu_co8435975.1_g000001 Rmu_sc0005706.1_g000003 Rmu_sc0024733.1_g000003
rosa_roxburghii	Rroxscaffold_7G00160520
rosa_rugosa	Rorug06G0364300 Rorug06G0364300 Rorug06G0364300
rosa_samantha	Rh1BG012800 Rh1DG012900 Rh6AG472900 Rh6BG484100 Rh6CG489000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	229
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	226
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	3 cut(s)	19, 182, 207
AgsI	TTSAA	2 cut(s)	40, 310
AloI	GAACNNNNNNTCC	2 cut(s)	211, 243
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	2 cut(s)	17, 138
AlwI	GGATC	1 cut(s)	371
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	61, 213
AspA2I	CCTAGG	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	213
AvrII	CCTAGG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	2 cut(s)	48, 200
BccI	CCATC	4 cut(s)	25, 37, 74, 353
BcoDI	GTCTC	2 cut(s)	17, 138
BfaI	CTAG	3 cut(s)	171, 207, 382
BfmI	CTRYAG	1 cut(s)	214
BfoI	RGCGCY	1 cut(s)	214
BisI	GCNGC	3 cut(s)	62, 187, 214
BlnI	CCTAGG	1 cut(s)	206
BlsI	GCNGC	3 cut(s)	63, 188, 215
BpiI	GAAGAC	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	226
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	181, 206
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 182, 207
Bse1I	ACTGG	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	181, 206
BseLI	CCNNNNNNNGG	3 cut(s)	19, 182, 207
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	48, 200
BshFI	GGCC	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	213
BslI	CCNNNNNNNGG	3 cut(s)	19, 182, 207
BsmAI	GTCTC	2 cut(s)	17, 138
BsmFI	GGGAC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	175
Bso31I	GGTCTC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	363
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	49
BspMAI	CTGCAG	1 cut(s)	218
BspPI	GGATC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	181, 206
BssMI	GATC	1 cut(s)	363
BssNI	GRCGYC	1 cut(s)	226
BssT1I	CCWWGG	2 cut(s)	181, 206
Bst4CI	ACNGT	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	226
BstDEI	CTNAG	2 cut(s)	47, 57
BstH2I	RGCGCY	1 cut(s)	214
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	1 cut(s)	366
BstMAI	GTCTC	2 cut(s)	17, 138
BstMBI	GATC	1 cut(s)	363
BstSFI	CTRYAG	1 cut(s)	214
BstV1I	GCAGC	2 cut(s)	48, 200
BstV2I	GAAGAC	1 cut(s)	47
BstXI	CCANNNNNNTGG	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	175
CfoI	GCGC	1 cut(s)	213
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	1 cut(s)	102
CviJI	RGCY	4 cut(s)	61, 170, 175, 351
CviKI_1	RGCY	4 cut(s)	61, 170, 175, 351
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	2 cut(s)	47, 57
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
Eco130I	CCWWGG	2 cut(s)	181, 206
Eco147I	AGGCCT	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	138
EcoT14I	CCWWGG	2 cut(s)	181, 206
ErhI	CCWWGG	2 cut(s)	181, 206
FaeI	CATG	1 cut(s)	105
FaiI	YATR	4 cut(s)	103, 123, 132, 279
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	1 cut(s)	101
Fnu4HI	GCNGC	3 cut(s)	62, 187, 214
Fsp4HI	GCNGC	3 cut(s)	62, 187, 214
FspBI	CTAG	3 cut(s)	171, 207, 382
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	3 cut(s)	62, 187, 214
HaeII	RGCGCY	1 cut(s)	214
HaeIII	GGCC	1 cut(s)	175
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	213
Hin1I	GRCGYC	1 cut(s)	226
Hin1II	CATG	1 cut(s)	105
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	293
Hpy188I	TCNGA	3 cut(s)	22, 256, 304
HpyAV	CCTTC	2 cut(s)	307, 324
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	2 cut(s)	64, 216
HpyF3I	CTNAG	2 cut(s)	47, 57
HpySE526I	ACGT	1 cut(s)	226
Hsp92I	GRCGYC	1 cut(s)	226
Hsp92II	CATG	1 cut(s)	105
HspAI	GCGC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	363
LpnPI	CCDG	5 cut(s)	18, 152, 162, 189, 207
Lsp1109I	GCAGC	2 cut(s)	48, 200
MaeI	CTAG	3 cut(s)	171, 207, 382
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	1 cut(s)	365
MboI	GATC	1 cut(s)	363
MboII	GAAGA	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	2 cut(s)	68, 79
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	357
NdeII	GATC	1 cut(s)	363
NlaIII	CATG	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	63, 188, 215
PstI	CTGCAG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	3 cut(s)	62, 187, 214
Sau3AI	GATC	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	3 cut(s)	15, 63, 229
SfcI	CTRYAG	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	357
SseBI	AGGCCT	1 cut(s)	175
SsiI	CCGC	1 cut(s)	186
SspI	AATATT	1 cut(s)	68
SspMI	CTAG	3 cut(s)	171, 207, 382
StuI	AGGCCT	1 cut(s)	175
StyI	CCWWGG	2 cut(s)	181, 206
TaaI	ACNGT	1 cut(s)	269
TaiI	ACGT	1 cut(s)	229
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	2 cut(s)	61, 213
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	306
XmaJI	CCTAGG	1 cut(s)	206
XspI	CTAG	3 cut(s)	171, 207, 382
ZraI	GACGTC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.