Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8435975.1

Orthogroup ID

OG0014833

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1499

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8435975.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 971 bp

agaatggattgaaagggaaacttggaaagccagcatatttggaagactggatcaccacaatcactcctttaacagcaggagattctgcatacaaggttacctttgactgggaagatgaaatcggagttccaggagcaatcctaataaaaaacaatcaccacagtcagttctaccttaagaccatcacactcgaagatgttcctggtgagggtaaagttcactttgtttgtaactcatgggtgtaccctgtagaaaaatacacgaaagaccgcgttttctttgttaacaagacttatcttccaagtgaaacaccattgccactacagaagtacagagaagacgaactagtacacttgagaggagatgggaaaggagagctccaggagtatgacagggtctatgactatgcttactacaatgatctgggaaatccagacaagggtccggattatgcccgtccaactctgggagggtctagtgagtacccttaccctcgaagaggaagaactggccgtgcaccaaccgagtcagatcctagcagtgagagtaggatccctcttctcatgagcttagacatttatgttccgagagacgaacgatttggacacttgaagatgtctgatttccttgcttatgcactgaaatccatagctcaattcatcagacctgagctagaagctgtatttgataagactcccaacgagtttgacagcttcgaagatgtacttaaactttatgaaggaggaattccattgcctgaaggtttcttaaaggacattggggataacatccctctagagatgatcaaggaaattttccgaactgacggtgcagagtttctcaggttcccaacacctgaagtgatcaaaaaaaataggttggcttggaggacagatgaagaatttgccagagaaatgctagctggagtgaaccctgtcaacattagtctcctccaagtaatttcaacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0044424 GO:0044464 GO:0051213 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

322

Amino Acids

36.78

Weight (kDa)

5.01

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014833)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g18070 pycom12g20360
rosa_chinensis	RchiOBHm_Chr6g0308121
rosa_laevigata	RLG00000030699
rosa_multiflora	Rmu_co8122894.1_g000001 Rmu_co8435975.1_g000001 Rmu_sc0005706.1_g000003 Rmu_sc0024733.1_g000003
rosa_roxburghii	Rroxscaffold_7G00160520
rosa_rugosa	Rorug06G0364300 Rorug06G0364300 Rorug06G0364300
rosa_samantha	Rh1BG012800 Rh1DG012900 Rh6AG472900 Rh6BG484100 Rh6CG489000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	272
AccIII	TCCGGA	1 cut(s)	444
AciI	CCGC	1 cut(s)	270
AclWI	GGATC	4 cut(s)	58, 526, 546, 559
AcoI	YGGCCR	1 cut(s)	510
AcsI	RAATTY	3 cut(s)	746, 812, 901
AcuI	CTGAAG	2 cut(s)	779, 878
AfaI	GTAC	5 cut(s)	244, 331, 350, 484, 725
AfiI	CCNNNNNNNGG	5 cut(s)	107, 208, 439, 466, 499
AflII	CTTAAG	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	12, 612, 965
AhlI	ACTAGT	1 cut(s)	345
AjnI	CCWGG	3 cut(s)	129, 201, 380
AluBI	AGCT	7 cut(s)	378, 569, 652, 672, 679, 713, 922
AluI	AGCT	7 cut(s)	378, 569, 652, 672, 679, 713, 922
Alw21I	GWGCWC	2 cut(s)	380, 519
Alw26I	GTCTC	2 cut(s)	584, 952
Alw44I	GTGCAC	1 cut(s)	515
AlwI	GGATC	4 cut(s)	58, 526, 546, 559
Aor13HI	TCCGGA	1 cut(s)	444
AoxI	GGCC	1 cut(s)	510
ApaLI	GTGCAC	1 cut(s)	515
ApoI	RAATTY	3 cut(s)	746, 812, 901
ArsI	GACNNNNNNTTYG	2 cut(s)	583, 615
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	442
AsuHPI	GGTGA	3 cut(s)	45, 148, 217
AsuII	TTCGAA	1 cut(s)	716
AsuNHI	GCTAGC	1 cut(s)	918
AvaII	GGWCC	1 cut(s)	442
BaeGI	GKGCMC	1 cut(s)	519
BamHI	GGATCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	380
BbsI	GAAGAC	2 cut(s)	50, 344
Bbv12I	GWGCWC	2 cut(s)	380, 519
BccI	CCATC	2 cut(s)	190, 358
BceAI	ACGGC	1 cut(s)	497
BciT130I	CCWGG	3 cut(s)	131, 203, 382
BclI	TGATCA	2 cut(s)	803, 863
BcoDI	GTCTC	2 cut(s)	584, 952
BcuI	ACTAGT	1 cut(s)	345
BfaI	CTAG	6 cut(s)	346, 476, 536, 673, 796, 919
BfmI	CTRYAG	2 cut(s)	248, 322
BfrI	CTTAAG	1 cut(s)	175
Bme1390I	CCNGG	3 cut(s)	131, 203, 382
Bme18I	GGWCC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	3 cut(s)	443, 553, 847
BmrFI	CCNGG	3 cut(s)	131, 203, 382
BmrI	ACTGGG	1 cut(s)	117
BmtI	GCTAGC	1 cut(s)	922
BmuI	ACTGGG	1 cut(s)	117
BoxI	GACNNNNGTC	1 cut(s)	440
BpiI	GAAGAC	2 cut(s)	50, 344
BpmI	CTGGAG	2 cut(s)	364, 944
Bpu10I	CCTNAGC	1 cut(s)	668
Bpu14I	TTCGAA	1 cut(s)	716
BpuEI	CTTGAG	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	444
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	5 cut(s)	107, 208, 439, 466, 499
Bse1I	ACTGG	3 cut(s)	52, 112, 513
Bse3DI	GCAATG	2 cut(s)	313, 751
BseAI	TCCGGA	1 cut(s)	444
BseBI	CCWGG	3 cut(s)	131, 203, 382
BseGI	GGATG	1 cut(s)	788
BseLI	CCNNNNNNNGG	5 cut(s)	107, 208, 439, 466, 499
BseMI	GCAATG	2 cut(s)	313, 751
BseMII	CTCAG	2 cut(s)	659, 855
BseNI	ACTGG	3 cut(s)	52, 112, 513
BseRI	GAGGAG	2 cut(s)	374, 940
BseSI	GKGCMC	1 cut(s)	519
BsgI	GTGCAG	1 cut(s)	851
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	512
BsiHKAI	GWGCWC	2 cut(s)	380, 519
BsiSI	CCGG	1 cut(s)	445
BslI	CCNNNNNNNGG	5 cut(s)	107, 208, 439, 466, 499
BsmAI	GTCTC	2 cut(s)	584, 952
BsmBI	CGTCTC	1 cut(s)	584
BsnI	GGCC	1 cut(s)	512
Bsp119I	TTCGAA	1 cut(s)	716
Bsp1286I	GDGCHC	2 cut(s)	380, 519
Bsp13I	TCCGGA	1 cut(s)	444
Bsp143I	GATC	6 cut(s)	50, 420, 531, 551, 803, 863
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	1 cut(s)	512
BspCNI	CTCAG	2 cut(s)	660, 854
BspEI	TCCGGA	1 cut(s)	444
BspFNI	CGCG	1 cut(s)	272
BspHI	TCATGA	1 cut(s)	563
BspLI	GGNNCC	3 cut(s)	443, 553, 847
BspOI	GCTAGC	1 cut(s)	922
BspPI	GGATC	4 cut(s)	58, 526, 546, 559
BspT104I	TTCGAA	1 cut(s)	716
BspTI	CTTAAG	1 cut(s)	175
BsrDI	GCAATG	2 cut(s)	313, 751
BsrI	ACTGG	3 cut(s)	52, 112, 513
BssMI	GATC	6 cut(s)	50, 420, 531, 551, 803, 863
Bst2UI	CCWGG	3 cut(s)	131, 203, 382
Bst4CI	ACNGT	2 cut(s)	163, 829
Bst6I	CTCTTC	2 cut(s)	492, 563
BstAFI	CTTAAG	1 cut(s)	175
BstBI	TTCGAA	1 cut(s)	716
BstC8I	GCNNGC	2 cut(s)	32, 920
BstDEI	CTNAG	3 cut(s)	570, 668, 841
BstEII	GGTNACC	1 cut(s)	96
BstENI	CCTNNNNNAGG	1 cut(s)	497
BstF5I	GGATG	1 cut(s)	788
BstFNI	CGCG	1 cut(s)	272
BstKTI	GATC	6 cut(s)	53, 423, 534, 554, 806, 866
BstMAI	GTCTC	2 cut(s)	584, 952
BstMBI	GATC	6 cut(s)	50, 420, 531, 551, 803, 863
BstNI	CCWGG	3 cut(s)	131, 203, 382
BstPAI	GACNNNNGTC	1 cut(s)	440
BstPI	GGTNACC	1 cut(s)	96
BstSCI	CCNGG	3 cut(s)	129, 201, 380
BstSFI	CTRYAG	2 cut(s)	248, 322
BstSLI	GKGCMC	1 cut(s)	519
BstUI	CGCG	1 cut(s)	272
BstV2I	GAAGAC	2 cut(s)	50, 344
BstX2I	RGATCY	2 cut(s)	531, 551
BstYI	RGATCY	2 cut(s)	531, 551
BsuRI	GGCC	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	788
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	2 cut(s)	546, 637
Cac8I	GCNNGC	2 cut(s)	32, 920
CciI	TCATGA	1 cut(s)	563
Cfr13I	GGNCC	1 cut(s)	442
Csp6I	GTAC	5 cut(s)	243, 330, 349, 483, 724
CviAII	CATG	2 cut(s)	236, 564
CviQI	GTAC	5 cut(s)	243, 330, 349, 483, 724
DdeI	CTNAG	3 cut(s)	570, 668, 841
DpnI	GATC	6 cut(s)	52, 422, 533, 553, 805, 865
DpnII	GATC	6 cut(s)	50, 420, 531, 551, 803, 863
EaeI	YGGCCR	1 cut(s)	510
Eam1104I	CTCTTC	2 cut(s)	492, 563
EarI	CTCTTC	2 cut(s)	492, 563
Ecl136II	GAGCTC	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	442
Eco53kI	GAGCTC	1 cut(s)	378
Eco57I	CTGAAG	2 cut(s)	779, 878
Eco91I	GGTNACC	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	378
EcoNI	CCTNNNNNAGG	1 cut(s)	497
EcoO65I	GGTNACC	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	746
EcoRII	CCWGG	3 cut(s)	129, 201, 380
EcoT38I	GRGCYC	1 cut(s)	380
Esp3I	CGTCTC	1 cut(s)	584
FaeI	CATG	2 cut(s)	239, 567
FalI	AAGNNNNNCTT	5 cut(s)	37, 85, 117, 710, 742
FatI	CATG	2 cut(s)	235, 563
FbaI	TGATCA	2 cut(s)	803, 863
FokI	GGATG	1 cut(s)	775
FriOI	GRGCYC	1 cut(s)	380
FspBI	CTAG	6 cut(s)	346, 476, 536, 673, 796, 919
GsuI	CTGGAG	2 cut(s)	364, 944
HaeIII	GGCC	1 cut(s)	512
HapII	CCGG	1 cut(s)	445
Hin1II	CATG	2 cut(s)	239, 567
HincII	GTYRAC	2 cut(s)	285, 939
HindII	GTYRAC	2 cut(s)	285, 939
HinfI	GANTC	3 cut(s)	82, 526, 693
HpaI	GTTAAC	1 cut(s)	285
HpaII	CCGG	1 cut(s)	445
HphI	GGTGA	3 cut(s)	45, 148, 217
Hpy166II	GTNNAC	7 cut(s)	219, 243, 285, 351, 517, 930, 939
Hpy188I	TCNGA	6 cut(s)	124, 531, 587, 621, 664, 820
Hpy188III	TCNNGA	4 cut(s)	433, 445, 564, 796
Hpy8I	GTNNAC	7 cut(s)	219, 243, 285, 351, 517, 930, 939
HpyAV	CCTTC	2 cut(s)	733, 754
HpyCH4III	ACNGT	2 cut(s)	163, 829
HpyCH4V	TGCA	4 cut(s)	88, 517, 637, 832
HpyF3I	CTNAG	3 cut(s)	570, 668, 841
Hsp92II	CATG	2 cut(s)	239, 567
Kpn2I	TCCGGA	1 cut(s)	444
Ksp22I	TGATCA	2 cut(s)	803, 863
KspAI	GTTAAC	1 cut(s)	285
Kzo9I	GATC	6 cut(s)	50, 420, 531, 551, 803, 863
LmnI	GCTCC	2 cut(s)	133, 383
MaeI	CTAG	6 cut(s)	346, 476, 536, 673, 796, 919
MaeIII	GTNAC	2 cut(s)	96, 229
MalI	GATC	6 cut(s)	52, 422, 533, 553, 805, 865
MboI	GATC	6 cut(s)	50, 420, 531, 551, 803, 863
MflI	RGATCY	2 cut(s)	531, 551
MhlI	GDGCHC	2 cut(s)	380, 519
MluCI	AATT	5 cut(s)	655, 746, 812, 901, 959
MlyI	GAGTC	2 cut(s)	535, 687
MmeI	TCCRAC	1 cut(s)	484
MroI	TCCGGA	1 cut(s)	444
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	5 cut(s)	70, 176, 284, 728, 769
MspCI	CTTAAG	1 cut(s)	175
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	3 cut(s)	131, 203, 382
MvaI	CCWGG	3 cut(s)	131, 203, 382
MvnI	CGCG	1 cut(s)	272
NdeII	GATC	6 cut(s)	50, 420, 531, 551, 803, 863
NheI	GCTAGC	1 cut(s)	918
NlaIII	CATG	2 cut(s)	239, 567
NlaIV	GGNNCC	3 cut(s)	443, 553, 847
NspV	TTCGAA	1 cut(s)	716
PagI	TCATGA	1 cut(s)	563
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	82
PflFI	GACNNNGTC	1 cut(s)	394
PfoI	TCCNGGA	2 cut(s)	129, 380
PleI	GAGTC	2 cut(s)	534, 687
PpsI	GAGTC	2 cut(s)	534, 687
PshAI	GACNNNNGTC	1 cut(s)	440
Psp124BI	GAGCTC	1 cut(s)	380
Psp6I	CCWGG	3 cut(s)	129, 201, 380
PspEI	GGTNACC	1 cut(s)	96
PspGI	CCWGG	3 cut(s)	129, 201, 380
PspN4I	GGNNCC	3 cut(s)	443, 553, 847
PspPI	GGNCC	1 cut(s)	442
PsuI	RGATCY	2 cut(s)	531, 551
PsyI	GACNNNGTC	1 cut(s)	394
RsaI	GTAC	5 cut(s)	244, 331, 350, 484, 725
RsaNI	GTAC	5 cut(s)	243, 330, 349, 483, 724
SacI	GAGCTC	1 cut(s)	380
SaqAI	TTAA	5 cut(s)	70, 176, 284, 728, 769
Sau3AI	GATC	6 cut(s)	50, 420, 531, 551, 803, 863
Sau96I	GGNCC	1 cut(s)	442
SchI	GAGTC	2 cut(s)	535, 687
ScrFI	CCNGG	3 cut(s)	131, 203, 382
SduI	GDGCHC	2 cut(s)	380, 519
SfcI	CTRYAG	2 cut(s)	248, 322
SfuI	TTCGAA	1 cut(s)	716
SinI	GGWCC	1 cut(s)	442
SmlI	CTYRAG	2 cut(s)	175, 354
SmoI	CTYRAG	2 cut(s)	175, 354
SpeI	ACTAGT	1 cut(s)	345
Sse9I	AATT	5 cut(s)	655, 746, 812, 901, 959
SsiI	CCGC	1 cut(s)	270
SspMI	CTAG	6 cut(s)	346, 476, 536, 673, 796, 919
SstI	GAGCTC	1 cut(s)	380
StyD4I	CCNGG	3 cut(s)	129, 201, 380
TaaI	ACNGT	2 cut(s)	163, 829
TaqI	TCGA	3 cut(s)	191, 495, 716
TasI	AATT	5 cut(s)	655, 746, 812, 901, 959
TatI	WGTACW	3 cut(s)	329, 348, 723
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	5 cut(s)	70, 176, 284, 728, 769
Tru9I	TTAA	5 cut(s)	70, 176, 284, 728, 769
TscAI	CASTG	2 cut(s)	546, 644
TspDTI	ATGAA	4 cut(s)	131, 648, 752, 911
TspRI	CASTG	2 cut(s)	546, 644
Tth111I	GACNNNGTC	1 cut(s)	394
Vha464I	CTTAAG	1 cut(s)	175
VneI	GTGCAC	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	442
XagI	CCTNNNNNAGG	1 cut(s)	497
XapI	RAATTY	3 cut(s)	746, 812, 901
XbaI	TCTAGA	1 cut(s)	795
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	6 cut(s)	346, 476, 536, 673, 796, 919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.