Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0014833

Physical Location & Seq

Genomic Coordinates Forward (+)

1579781 .. 1580786

Gene Structure 1006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG012800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGACGCGTGTTTATGTTGTTGTAGGGACGGGGTTAGAGAAGACGCTATCAAGGGCTACGCACATAAAGCGAGCACAAGTGTTGACGAGTATGAGAGTTCATTCCATATATGACAATGCAGATAAGAGAATCTTTTTCACCAACAAGTGCTACCTACCATCGGAGACACCATCTGGGTTGAAGACGCTAAGAGAAACTGAGCTGCAATATTTGAGAGGAGATGAAAAGGGCGAAAGAGAAACATGGGATAGGATTTACGATTATGATAAATATAATGATCTTGGAGACCCAGATAAGAAAAAGGGACTGGCTAGGCCCGTCCTTGGCGGCAAAGAGCACCCCTACCCTAGGCGCTGCAGAGCAGGACGTCTCCACACTAAAAAAAAGTCATTGTCGGAACAAAAGAGCAGCAGTGTGTATGTACCAAGAGATGAATCCTTCTCGGAGTTGAAACAAGTGACATTTTTGGAAGGGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

159

Amino Acids

18.42

Weight (kDa)

9.54

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	59 - 157	6.3e-40	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014833)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g18070 pycom12g20360
rosa_chinensis	RchiOBHm_Chr6g0308121
rosa_laevigata	RLG00000030699
rosa_multiflora	Rmu_co8122894.1_g000001 Rmu_co8435975.1_g000001 Rmu_sc0005706.1_g000003 Rmu_sc0024733.1_g000003
rosa_roxburghii	Rroxscaffold_7G00160520
rosa_rugosa	Rorug06G0364300 Rorug06G0364300 Rorug06G0364300
rosa_samantha	Rh1BG012800 Rh1DG012900 Rh6AG472900 Rh6BG484100 Rh6CG489000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	370
AccII	CGCG	1 cut(s)	7
AciI	CCGC	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	367
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	3 cut(s)	160, 323, 348
AflIII	ACRYGT	1 cut(s)	5
AgsI	TTSAA	2 cut(s)	181, 451
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw21I	GWGCWC	2 cut(s)	76, 339
Alw26I	GTCTC	3 cut(s)	158, 279, 374
AoxI	GGCC	1 cut(s)	314
ApeKI	GCWGC	3 cut(s)	202, 354, 408
AspA2I	CCTAGG	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	130
AvrII	CCTAGG	1 cut(s)	347
BbsI	GAAGAC	2 cut(s)	47, 188
Bbv12I	GWGCWC	2 cut(s)	76, 339
BbvI	GCAGC	3 cut(s)	189, 341, 420
BccI	CCATC	2 cut(s)	166, 178
BcoDI	GTCTC	3 cut(s)	158, 279, 374
BfaI	CTAG	2 cut(s)	312, 348
BfmI	CTRYAG	1 cut(s)	355
BfoI	RGCGCY	1 cut(s)	355
BisI	GCNGC	4 cut(s)	203, 328, 355, 409
BlnI	CCTAGG	1 cut(s)	347
BlsI	GCNGC	4 cut(s)	204, 329, 356, 410
BmgT120I	GGNCC	1 cut(s)	315
BpiI	GAAGAC	2 cut(s)	47, 188
BsaHI	GRCGYC	1 cut(s)	367
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	322, 347
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 323, 348
Bse1I	ACTGG	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	322, 347
BseLI	CCNNNNNNNGG	3 cut(s)	160, 323, 348
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	231
BseXI	GCAGC	3 cut(s)	189, 341, 420
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	1 cut(s)	316
BsiHKAI	GWGCWC	2 cut(s)	76, 339
BslFI	GGGAC	2 cut(s)	40, 318
BslI	CCNNNNNNNGG	3 cut(s)	160, 323, 348
BsmAI	GTCTC	3 cut(s)	158, 279, 374
BsmBI	CGTCTC	1 cut(s)	374
BsmFI	GGGAC	2 cut(s)	40, 318
BsnI	GGCC	1 cut(s)	316
Bso31I	GGTCTC	1 cut(s)	279
Bsp1286I	GDGCHC	2 cut(s)	76, 339
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	1 cut(s)	316
BspCNI	CTCAG	1 cut(s)	190
BspFNI	CGCG	1 cut(s)	7
BspMAI	CTGCAG	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	2 cut(s)	322, 347
BssMI	GATC	1 cut(s)	277
BssNI	GRCGYC	1 cut(s)	367
BssT1I	CCWWGG	2 cut(s)	322, 347
BstACI	GRCGYC	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	188, 198
BstENI	CCTNNNNNAGG	1 cut(s)	346
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	3 cut(s)	158, 279, 374
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	355
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	3 cut(s)	189, 341, 420
BstV2I	GAAGAC	2 cut(s)	47, 188
BsuRI	GGCC	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	418
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	315
CseI	GACGC	3 cut(s)	13, 52, 193
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	1 cut(s)	243
CviJI	RGCY	4 cut(s)	56, 202, 311, 316
CviKI_1	RGCY	4 cut(s)	56, 202, 311, 316
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	2 cut(s)	188, 198
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
Eco130I	CCWWGG	2 cut(s)	322, 347
Eco31I	GGTCTC	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	346
EcoT14I	CCWWGG	2 cut(s)	322, 347
ErhI	CCWWGG	2 cut(s)	322, 347
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	1 cut(s)	246
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	2 cut(s)	40, 318
FatI	CATG	1 cut(s)	242
Fnu4HI	GCNGC	4 cut(s)	203, 328, 355, 409
Fsp4HI	GCNGC	4 cut(s)	203, 328, 355, 409
FspBI	CTAG	2 cut(s)	312, 348
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	4 cut(s)	203, 328, 355, 409
HaeII	RGCGCY	1 cut(s)	355
HaeIII	GGCC	1 cut(s)	316
HgaI	GACGC	3 cut(s)	13, 52, 193
HhaI	GCGC	1 cut(s)	354
Hin1I	GRCGYC	1 cut(s)	367
Hin1II	CATG	1 cut(s)	246
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	129, 434
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	3 cut(s)	163, 397, 445
Hpy8I	GTNNAC	1 cut(s)	84
HpyAV	CCTTC	2 cut(s)	448, 464
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	3 cut(s)	119, 205, 357
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	2 cut(s)	188, 198
HpySE526I	ACGT	1 cut(s)	367
Hsp92I	GRCGYC	1 cut(s)	367
Hsp92II	CATG	1 cut(s)	246
HspAI	GCGC	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	277
LpnPI	CCDG	4 cut(s)	159, 293, 303, 348
Lsp1109I	GCAGC	3 cut(s)	189, 341, 420
MaeI	CTAG	2 cut(s)	312, 348
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	2 cut(s)	52, 193
MhlI	GDGCHC	2 cut(s)	76, 339
MluI	ACGCGT	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	1 cut(s)	209
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	457
PfeI	GAWTC	2 cut(s)	129, 434
PkrI	GCNGC	4 cut(s)	204, 329, 356, 410
PspPI	GGNCC	1 cut(s)	315
PstI	CTGCAG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SatI	GCNGC	4 cut(s)	203, 328, 355, 409
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	1 cut(s)	315
SduI	GDGCHC	2 cut(s)	76, 339
SetI	ASST	3 cut(s)	156, 204, 370
SfcI	CTRYAG	1 cut(s)	355
SsiI	CCGC	1 cut(s)	327
SspI	AATATT	1 cut(s)	209
SspMI	CTAG	2 cut(s)	312, 348
StyI	CCWWGG	2 cut(s)	322, 347
TaiI	ACGT	1 cut(s)	370
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	2 cut(s)	129, 434
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	3 cut(s)	202, 354, 408
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	3 cut(s)	89, 237, 447
TspRI	CASTG	1 cut(s)	418
XagI	CCTNNNNNAGG	1 cut(s)	346
XmaJI	CCTAGG	1 cut(s)	347
XspI	CTAG	2 cut(s)	312, 348
ZraI	GACGTC	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.