Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024733.1

Orthogroup ID

OG0014833

Physical Location & Seq

Genomic Coordinates Reverse (-)

6090 .. 6664

Gene Structure 575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024733.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atggttagctttgacgttgaaggcgaaataggagttccaggagcattcttaataagaaacaatcatcacagtgagttcttccttaagacggtcacactcgaagatgttcccggtgcgggtcagatccactttgtttgcaactcatgggtctaccctgcatccaaatacaagaaacaccgtattttctttgctaacaagacgtatcttccgagtgatacaccattggcactacgcaaatacagacaacaggaacttgaacagttgagaggaaatggaacaggagagctaaatgaatgggagagggtctacgatgcttactacaatgatctcggtgacccagacagcggttccaactatgttcgtccagttcttggagggtctagccagtatccttaccctcgtagaggaagaactgatcgaccaccaacaaggacaggtacattagcctttcacgtatgtttcatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0044424 GO:0044464 GO:0051213 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

155

Amino Acids

17.72

Weight (kDa)

7.8

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014833)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g18070 pycom12g20360
rosa_chinensis	RchiOBHm_Chr6g0308121
rosa_laevigata	RLG00000030699
rosa_multiflora	Rmu_co8122894.1_g000001 Rmu_co8435975.1_g000001 Rmu_sc0005706.1_g000003 Rmu_sc0024733.1_g000003
rosa_roxburghii	Rroxscaffold_7G00160520
rosa_rugosa	Rorug06G0364300 Rorug06G0364300 Rorug06G0364300
rosa_samantha	Rh1BG012800 Rh1DG012900 Rh6AG472900 Rh6BG484100 Rh6CG489000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	371
AccI	GTMKAC	2 cut(s)	150, 306
AciI	CCGC	2 cut(s)	116, 345
AclWI	GGATC	1 cut(s)	118
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	5 cut(s)	88, 116, 344, 371, 404
AflII	CTTAAG	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	20, 257
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	2 cut(s)	9, 286
AluI	AGCT	2 cut(s)	9, 286
AlwI	GGATC	1 cut(s)	118
Asp700I	GAANNNNTTC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	39
BciVI	GTATCC	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	111
BfaI	CTAG	1 cut(s)	381
BfrI	CTTAAG	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	399
Bme1390I	CCNGG	2 cut(s)	39, 111
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	2 cut(s)	39, 111
BmsI	GCATC	2 cut(s)	167, 301
BpuMI	CCSGG	1 cut(s)	111
BsaAI	YACGTR	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 116, 344, 371, 404
Bse1I	ACTGG	2 cut(s)	365, 385
BseBI	CCWGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	158
BseLI	CCNNNNNNNGG	5 cut(s)	88, 116, 344, 371, 404
BseNI	ACTGG	2 cut(s)	365, 385
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	5 cut(s)	88, 116, 344, 371, 404
BsmI	GAATGC	1 cut(s)	44
Bsp143I	GATC	3 cut(s)	123, 325, 415
BspACI	CCGC	2 cut(s)	116, 345
BspLI	GGNNCC	1 cut(s)	349
BspPI	GGATC	1 cut(s)	118
BspTI	CTTAAG	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	365, 385
BssMI	GATC	3 cut(s)	123, 325, 415
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	4 cut(s)	71, 91, 179, 261
BstAFI	CTTAAG	1 cut(s)	83
BstBAI	YACGTR	1 cut(s)	454
BstEII	GGTNACC	1 cut(s)	332
BstENI	CCTNNNNNAGG	1 cut(s)	402
BstF5I	GGATG	1 cut(s)	158
BstKTI	GATC	3 cut(s)	126, 328, 418
BstMBI	GATC	3 cut(s)	123, 325, 415
BstNI	CCWGG	1 cut(s)	39
BstPI	GGTNACC	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	37, 109
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	438
CspCI	CAANNNNNGTGG	2 cut(s)	116, 151
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	4 cut(s)	9, 286, 384, 446
CviKI_1	RGCY	4 cut(s)	9, 286, 384, 446
CviQI	GTAC	1 cut(s)	438
DpnI	GATC	3 cut(s)	125, 327, 417
DpnII	GATC	3 cut(s)	123, 325, 415
Eco91I	GGTNACC	1 cut(s)	332
EcoNI	CCTNNNNNAGG	1 cut(s)	402
EcoO65I	GGTNACC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	37
FaeI	CATG	1 cut(s)	147
FaiI	YATR	3 cut(s)	145, 357, 457
FatI	CATG	1 cut(s)	143
FauI	CCCGC	1 cut(s)	109
FblI	GTMKAC	2 cut(s)	150, 306
FokI	GGATG	1 cut(s)	145
FspBI	CTAG	1 cut(s)	381
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	1 cut(s)	147
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	2 cut(s)	151, 307
Hpy188I	TCNGA	2 cut(s)	123, 210
Hpy8I	GTNNAC	2 cut(s)	151, 307
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	4 cut(s)	71, 91, 179, 261
HpyCH4IV	ACGT	3 cut(s)	15, 200, 453
HpyCH4V	TGCA	2 cut(s)	138, 158
HpySE526I	ACGT	3 cut(s)	15, 200, 453
Hsp92II	CATG	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	123, 325, 415
LmnI	GCTCC	1 cut(s)	41
LweI	GCATC	2 cut(s)	167, 301
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	3 cut(s)	15, 200, 453
MaeIII	GTNAC	2 cut(s)	91, 332
MalI	GATC	3 cut(s)	125, 327, 417
MboI	GATC	3 cut(s)	123, 325, 415
MboII	GAAGA	4 cut(s)	70, 113, 197, 420
MflI	RGATCY	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	5 cut(s)	260, 294, 368, 398, 408
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	3 cut(s)	50, 84, 466
MslI	CAYNNNNRTG	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	345
MspCI	CTTAAG	1 cut(s)	83
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	39, 111
Mva1269I	GAATGC	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	39
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	3 cut(s)	123, 325, 415
NlaIII	CATG	1 cut(s)	147
NlaIV	GGNNCC	1 cut(s)	349
NmuCI	GTSAC	2 cut(s)	91, 332
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 206
PctI	GAATGC	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	105
PflMI	CCANNNNNTGG	1 cut(s)	371
PfoI	TCCNGGA	1 cut(s)	37
Ppu21I	YACGTR	1 cut(s)	454
Psp6I	CCWGG	1 cut(s)	37
PspEI	GGTNACC	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	123
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	50, 84, 466
Sau3AI	GATC	3 cut(s)	123, 325, 415
ScrFI	CCNGG	2 cut(s)	39, 111
SetI	ASST	6 cut(s)	11, 18, 203, 288, 439, 456
SfaNI	GCATC	2 cut(s)	167, 301
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SsiI	CCGC	2 cut(s)	116, 345
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	37, 109
TaaI	ACNGT	4 cut(s)	71, 91, 179, 261
TaiI	ACGT	3 cut(s)	18, 203, 456
TaqI	TCGA	2 cut(s)	99, 418
Tru1I	TTAA	3 cut(s)	50, 84, 466
Tru9I	TTAA	3 cut(s)	50, 84, 466
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	2 cut(s)	91, 332
Tsp45I	GTSAC	2 cut(s)	91, 332
TspDTI	ATGAA	2 cut(s)	306, 451
TspRI	CASTG	1 cut(s)	76
Van91I	CCANNNNNTGG	1 cut(s)	371
Vha464I	CTTAAG	1 cut(s)	83
XagI	CCTNNNNNAGG	1 cut(s)	402
XmiI	GTMKAC	2 cut(s)	150, 306
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.