Rh6BG484100

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
68902893 .. 68907329
4437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG484100.1

Sequence Viewer

Length: 768 bp
ATGGTCCGAATATACAAGATGTTCCAAACCCATGGTTCCAACAAAAAGATCAAAGGAACCGTGGTGCTGATGAAGAAGAATTTTTTTGACTTCAATGACTTTAATGCTTCGGTTCTCGATCGTGTGAAGGAGTTTTTGGGCCGACGAGTTTCTTTGCAGCTCATTAGTGCTGTTAATGGTGATTCTTCAAATGAATCGCAAGGGAAACTCGGAAAATTAGGATATTTGGAGAAGTGGATTACCATAATCAGTCCGTTAACAGCAGGGGGAGAGACTAAATTCATGGTTAGCTTTGACGACGTTGAAGGCGAAATAGGAGTTCCAGGAGCATTCTTAATAAGAAACAATCATCACAGTGAGTTCTTCCTTAAGACGGTCACACTCGAAGATGTTCCCGGTGCGGGTCAGATCCACTTTGTTTGCAACTCATGGGTTTACCCTGCATCCAAATACAAGAAAGACCGTATTTTCTTTGCTAACAAGACGTATCTTCCGAGTGATACACCATTGGCACTACGCAAATACAGACAACAGGAACTTGAGCAGTTGAGAGGAAATGGAACAGGAGAGCTAAACGAATGGGAGAGGGTCTACGACTATGCTTACTACAATGATCTCGGTGACCCAGACAGCGGTTCCCACTATGCCCGTCCAGTTCTTGGAGGGTCTAGCCAGTATCCTTACCCTCGTAGAGGAAGAACTGGTCGACCACCAACAAGGACAGAAATCCCAAAACAGAGACCCGATCAGAAACCCGGTAGAAGATGA

Protein Analysis

255

Amino Acids

29.08

Weight (kDa)

9.53

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 52 - 158 5.2e-20 PLAT/LH2 domain
Lipoxygenase PF00305 172 - 245 1.8e-30 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 659
AccI GTMKAC 2 cut(s) 591, 706
AciI CCGC 2 cut(s) 401, 633
AclWI GGATC 1 cut(s) 403
AcsI RAATTY 2 cut(s) 79, 278
AfiI CCNNNNNNNGG 5 cut(s) 373, 401, 632, 659, 692
AflII CTTAAG 1 cut(s) 368
AgsI TTSAA 3 cut(s) 94, 189, 305
AjnI CCWGG 1 cut(s) 322
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 3 cut(s) 160, 291, 571
AluI AGCT 3 cut(s) 160, 291, 571
Alw26I GTCTC 2 cut(s) 266, 733
AlwI GGATC 1 cut(s) 403
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 157
ApoI RAATTY 2 cut(s) 79, 278
Asp700I GAANNNNTTC 1 cut(s) 390
AspS9I GGNCC 2 cut(s) 4, 139
AsuC2I CCSGG 2 cut(s) 396, 756
AsuHPI GGTGA 2 cut(s) 191, 632
AvaII GGWCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 324
BciVI GTATCC 1 cut(s) 687
BcnI CCSGG 2 cut(s) 396, 756
BcoDI GTCTC 2 cut(s) 266, 733
BfaI CTAG 1 cut(s) 669
BfrI CTTAAG 1 cut(s) 368
BfuI GTATCC 1 cut(s) 687
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
Bme1390I CCNGG 3 cut(s) 324, 396, 756
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 139
BmiI GGNNCC 3 cut(s) 37, 58, 637
BmrFI CCNGG 3 cut(s) 324, 396, 756
BmsI GCATC 1 cut(s) 452
BpuEI CTTGAG 1 cut(s) 560
BpuMI CCSGG 2 cut(s) 396, 756
BsaI GGTCTC 1 cut(s) 733
BsaJI CCNNGG 2 cut(s) 31, 60
Bsc4I CCNNNNNNNGG 5 cut(s) 373, 401, 632, 659, 692
Bse1I ACTGG 3 cut(s) 653, 673, 706
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 31, 60
BseGI GGATG 1 cut(s) 443
BseLI CCNNNNNNNGG 5 cut(s) 373, 401, 632, 659, 692
BseNI ACTGG 3 cut(s) 653, 673, 706
BseXI GCAGC 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 1 cut(s) 141
BsiEI CGRYCG 1 cut(s) 121
BsiSI CCGG 2 cut(s) 396, 756
BslI CCNNNNNNNGG 5 cut(s) 373, 401, 632, 659, 692
BsmAI GTCTC 2 cut(s) 266, 733
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 733
Bsp143I GATC 5 cut(s) 48, 118, 408, 613, 745
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 2 cut(s) 401, 633
BspANI GGCC 1 cut(s) 141
BspLI GGNNCC 3 cut(s) 37, 58, 637
BspPI GGATC 1 cut(s) 403
BspTI CTTAAG 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 733
BsrI ACTGG 3 cut(s) 653, 673, 706
BssECI CCNNGG 2 cut(s) 31, 60
BssMI GATC 5 cut(s) 48, 118, 408, 613, 745
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 4 cut(s) 61, 356, 376, 464
BstAFI CTTAAG 1 cut(s) 368
BstDSI CCRYGG 2 cut(s) 31, 60
BstEII GGTNACC 1 cut(s) 620
BstENI CCTNNNNNAGG 1 cut(s) 690
BstF5I GGATG 1 cut(s) 443
BstKTI GATC 5 cut(s) 51, 121, 411, 616, 748
BstMAI GTCTC 2 cut(s) 266, 733
BstMBI GATC 5 cut(s) 48, 118, 408, 613, 745
BstMCI CGRYCG 1 cut(s) 121
BstNI CCWGG 1 cut(s) 324
BstPI GGTNACC 1 cut(s) 620
BstSCI CCNGG 3 cut(s) 322, 394, 754
BstV1I GCAGC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 408
BstXI CCANNNNNNTGG 1 cut(s) 32
BstYI RGATCY 1 cut(s) 408
BsuI GTATCC 1 cut(s) 687
BsuRI GGCC 1 cut(s) 141
BtgI CCRYGG 2 cut(s) 31, 60
BtsCI GGATG 1 cut(s) 443
BtsIMutI CAGTG 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 4, 139
CspCI CAANNNNNGTGG 2 cut(s) 401, 436
CviAII CATG 3 cut(s) 32, 283, 429
CviJI RGCY 5 cut(s) 141, 160, 291, 571, 672
CviKI_1 RGCY 5 cut(s) 141, 160, 291, 571, 672
DpnI GATC 5 cut(s) 50, 120, 410, 615, 747
DpnII GATC 5 cut(s) 48, 118, 408, 613, 745
Eco130I CCWWGG 1 cut(s) 31
Eco31I GGTCTC 1 cut(s) 733
Eco47I GGWCC 1 cut(s) 4
Eco91I GGTNACC 1 cut(s) 620
EcoNI CCTNNNNNAGG 1 cut(s) 690
EcoO65I GGTNACC 1 cut(s) 620
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 3 cut(s) 35, 286, 432
FaiI YATR 7 cut(s) 13, 33, 245, 284, 430, 600, 645
FatI CATG 3 cut(s) 31, 282, 428
FauI CCCGC 1 cut(s) 394
FblI GTMKAC 2 cut(s) 591, 706
Fnu4HI GCNGC 1 cut(s) 158
FokI GGATG 1 cut(s) 430
Fsp4HI GCNGC 1 cut(s) 158
FspBI CTAG 1 cut(s) 669
GluI GCNGC 1 cut(s) 158
HaeIII GGCC 1 cut(s) 141
HapII CCGG 2 cut(s) 396, 756
Hin1II CATG 3 cut(s) 35, 286, 432
HincII GTYRAC 2 cut(s) 258, 707
HindII GTYRAC 2 cut(s) 258, 707
HinfI GANTC 2 cut(s) 182, 194
HpaI GTTAAC 1 cut(s) 258
HpaII CCGG 2 cut(s) 396, 756
HphI GGTGA 2 cut(s) 191, 632
Hpy166II GTNNAC 4 cut(s) 258, 436, 592, 707
Hpy188I TCNGA 5 cut(s) 8, 212, 408, 495, 750
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 4 cut(s) 258, 436, 592, 707
Hpy99I CGWCG 2 cut(s) 147, 302
HpyAV CCTTC 2 cut(s) 121, 299
HpyCH4III ACNGT 4 cut(s) 61, 356, 376, 464
HpyCH4IV ACGT 2 cut(s) 300, 485
HpyCH4V TGCA 3 cut(s) 157, 423, 443
HpySE526I ACGT 2 cut(s) 300, 485
Hsp92II CATG 3 cut(s) 35, 286, 432
KspAI GTTAAC 1 cut(s) 258
Kzo9I GATC 5 cut(s) 48, 118, 408, 613, 745
LmnI GCTCC 1 cut(s) 326
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 452
MaeI CTAG 1 cut(s) 669
MaeII ACGT 2 cut(s) 300, 485
MaeIII GTNAC 2 cut(s) 376, 620
MalI GATC 5 cut(s) 50, 120, 410, 615, 747
MboI GATC 5 cut(s) 48, 118, 408, 613, 745
MboII GAAGA 7 cut(s) 85, 88, 177, 355, 398, 482, 708
MflI RGATCY 1 cut(s) 408
MluCI AATT 3 cut(s) 79, 215, 278
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 5 cut(s) 545, 579, 656, 686, 696
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 5 cut(s) 102, 174, 257, 335, 369
MslI CAYNNNNRTG 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 633
MspCI CTTAAG 1 cut(s) 368
MspI CCGG 2 cut(s) 396, 756
MspR9I CCNGG 3 cut(s) 324, 396, 756
Mva1269I GAATGC 1 cut(s) 329
MvaI CCWGG 1 cut(s) 324
NciI CCSGG 2 cut(s) 396, 756
NcoI CCATGG 1 cut(s) 31
NdeII GATC 5 cut(s) 48, 118, 408, 613, 745
NlaIII CATG 3 cut(s) 35, 286, 432
NlaIV GGNNCC 3 cut(s) 37, 58, 637
NmuCI GTSAC 2 cut(s) 376, 620
PcsI WCGNNNNNNNCGW 2 cut(s) 306, 491
PctI GAATGC 1 cut(s) 329
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 2 cut(s) 182, 194
PflMI CCANNNNNTGG 1 cut(s) 659
PfoI TCCNGGA 1 cut(s) 322
PkrI GCNGC 1 cut(s) 159
Ple19I CGATCG 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 322
PspEI GGTNACC 1 cut(s) 620
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 3 cut(s) 37, 58, 637
PspPI GGNCC 2 cut(s) 4, 139
PsuI RGATCY 1 cut(s) 408
PvuI CGATCG 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 354
SalI GTCGAC 1 cut(s) 705
SaqAI TTAA 5 cut(s) 102, 174, 257, 335, 369
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 5 cut(s) 48, 118, 408, 613, 745
Sau96I GGNCC 2 cut(s) 4, 139
ScrFI CCNGG 3 cut(s) 324, 396, 756
SetI ASST 5 cut(s) 162, 293, 303, 488, 573
SfaNI GCATC 1 cut(s) 452
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 2 cut(s) 368, 539
SmoI CTYRAG 2 cut(s) 368, 539
Sse9I AATT 3 cut(s) 79, 215, 278
SsiI CCGC 2 cut(s) 401, 633
SspMI CTAG 1 cut(s) 669
StyD4I CCNGG 3 cut(s) 322, 394, 754
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 4 cut(s) 61, 356, 376, 464
TaiI ACGT 2 cut(s) 303, 488
TaqI TCGA 3 cut(s) 117, 384, 706
TasI AATT 3 cut(s) 79, 215, 278
TfiI GAWTC 2 cut(s) 182, 194
Tru1I TTAA 5 cut(s) 102, 174, 257, 335, 369
Tru9I TTAA 5 cut(s) 102, 174, 257, 335, 369
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 2 cut(s) 376, 620
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 2 cut(s) 376, 620
TspDTI ATGAA 3 cut(s) 86, 207, 271
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 1 cut(s) 361
Van91I CCANNNNNTGG 1 cut(s) 659
Vha464I CTTAAG 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 690
XapI RAATTY 2 cut(s) 79, 278
XmiI GTMKAC 2 cut(s) 591, 706
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.