Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0014833

Physical Location & Seq

Genomic Coordinates Reverse (-)

66125359 .. 66126057

Gene Structure 699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030699

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCTATCAAGGGCTACGCACATAAAGCGAGAACAGGTGTTGACGAGTATGAGAGTGAGTTCACCATCCCACAAGGTTTCGGAGAGGTTGGCGCGATTTAGGTTCAGAATGAGCACCGAAAGGAAATTTATCCCCAATGGTTGTCTCAGTTTTGCTTGTAACTCCTGGGTTCATTCCATATATGACCATGCAGATAAGAGAATCTTTTTCACCAACAAGTGTTACCTACCATCGGAGACACCATCTGGGTTGAAGACGCTAAGAGAAACTGAGCTGCAATATTTGAGAGGAGATGGAGAGGGCGAAAGAGAAACATGGGATAGGATTTACGATTATGATCAATATAATGATCTTGGAGACCCAGATAAGAAAAAGGAACTGGCTAGGCCCGTCCTTGGCGGCAAAGAGCACCCTTACCCTAGGCGCTGCAGAAGAGGACGTCCCCACACTAAAAAAGTAACCACTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

157

Amino Acids

18.38

Weight (kDa)

9.72

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	83 - 153	2.3e-30	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014833)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g18070 pycom12g20360
rosa_chinensis	RchiOBHm_Chr6g0308121
rosa_laevigata	RLG00000030699
rosa_multiflora	Rmu_co8122894.1_g000001 Rmu_co8435975.1_g000001 Rmu_sc0005706.1_g000003 Rmu_sc0024733.1_g000003
rosa_roxburghii	Rroxscaffold_7G00160520
rosa_rugosa	Rorug06G0364300 Rorug06G0364300 Rorug06G0364300
rosa_samantha	Rh1BG012800 Rh1DG012900 Rh6AG472900 Rh6BG484100 Rh6CG489000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	442
AccII	CGCG	1 cut(s)	94
AciI	CCGC	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	439
AfiI	CCNNNNNNNGG	2 cut(s)	232, 395
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
Alw21I	GWGCWC	2 cut(s)	116, 411
Alw26I	GTCTC	3 cut(s)	149, 230, 351
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	2 cut(s)	274, 426
ApoI	RAATTY	1 cut(s)	125
AspA2I	CCTAGG	1 cut(s)	419
AspLEI	GCGC	2 cut(s)	94, 426
AspS9I	GGNCC	1 cut(s)	387
AsuHPI	GGTGA	2 cut(s)	54, 202
AvrII	CCTAGG	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	260
Bbv12I	GWGCWC	2 cut(s)	116, 411
BbvI	GCAGC	2 cut(s)	261, 413
BccI	CCATC	4 cut(s)	73, 238, 250, 287
BciT130I	CCWGG	1 cut(s)	166
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	3 cut(s)	149, 230, 351
BfaI	CTAG	2 cut(s)	384, 420
BfmI	CTRYAG	1 cut(s)	427
BfoI	RGCGCY	1 cut(s)	427
BisI	GCNGC	3 cut(s)	275, 400, 427
BlnI	CCTAGG	1 cut(s)	419
BlsI	GCNGC	3 cut(s)	276, 401, 428
Bme1390I	CCNGG	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	387
BmrFI	CCNGG	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	439
BsaI	GGTCTC	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	165, 394, 419
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 395
Bse1I	ACTGG	1 cut(s)	384
Bse8I	GATNNNNATC	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	3 cut(s)	165, 394, 419
BseGI	GGATG	1 cut(s)	65
BseJI	GATNNNNATC	1 cut(s)	336
BseLI	CCNNNNNNNGG	2 cut(s)	232, 395
BseMII	CTCAG	2 cut(s)	160, 261
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	261, 413
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	388
BsiHKAI	GWGCWC	2 cut(s)	116, 411
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	2 cut(s)	232, 395
BsmAI	GTCTC	3 cut(s)	149, 230, 351
BsmFI	GGGAC	1 cut(s)	426
BsnI	GGCC	1 cut(s)	388
Bso31I	GGTCTC	1 cut(s)	351
Bsp1286I	GDGCHC	2 cut(s)	116, 411
Bsp143I	GATC	2 cut(s)	337, 349
BspACI	CCGC	1 cut(s)	399
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	2 cut(s)	159, 262
BspFNI	CGCG	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	431
BspTNI	GGTCTC	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	3 cut(s)	165, 394, 419
BssMI	GATC	2 cut(s)	337, 349
BssNI	GRCGYC	1 cut(s)	439
BssT1I	CCWWGG	2 cut(s)	394, 419
Bst2UI	CCWGG	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	427
BstACI	GRCGYC	1 cut(s)	439
BstDEI	CTNAG	3 cut(s)	146, 260, 270
BstF5I	GGATG	1 cut(s)	65
BstFNI	CGCG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	427
BstHHI	GCGC	2 cut(s)	94, 426
BstKTI	GATC	2 cut(s)	340, 352
BstMAI	GTCTC	3 cut(s)	149, 230, 351
BstMBI	GATC	2 cut(s)	337, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	427
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	261, 413
BstV2I	GAAGAC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	65
CfoI	GCGC	2 cut(s)	94, 426
Cfr13I	GGNCC	1 cut(s)	387
CseI	GACGC	1 cut(s)	265
CviAII	CATG	2 cut(s)	188, 315
CviJI	RGCY	4 cut(s)	14, 274, 383, 388
CviKI_1	RGCY	4 cut(s)	14, 274, 383, 388
DdeI	CTNAG	3 cut(s)	146, 260, 270
DpnI	GATC	2 cut(s)	339, 351
DpnII	GATC	2 cut(s)	337, 349
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
Eco130I	CCWWGG	2 cut(s)	394, 419
Eco31I	GGTCTC	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	164
EcoT14I	CCWWGG	2 cut(s)	394, 419
ErhI	CCWWGG	2 cut(s)	394, 419
FaeI	CATG	2 cut(s)	191, 318
FaiI	YATR	9 cut(s)	23, 50, 179, 181, 183, 189, 316, 336, 345
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	2 cut(s)	187, 314
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	3 cut(s)	275, 400, 427
FokI	GGATG	1 cut(s)	52
Fsp4HI	GCNGC	3 cut(s)	275, 400, 427
FspBI	CTAG	2 cut(s)	384, 420
GlaI	GCGC	2 cut(s)	93, 425
GluI	GCNGC	3 cut(s)	275, 400, 427
HaeII	RGCGCY	1 cut(s)	427
HaeIII	GGCC	1 cut(s)	388
HgaI	GACGC	1 cut(s)	265
HhaI	GCGC	2 cut(s)	94, 426
Hin1I	GRCGYC	1 cut(s)	439
Hin1II	CATG	2 cut(s)	191, 318
Hin6I	GCGC	2 cut(s)	92, 424
HinP1I	GCGC	2 cut(s)	92, 424
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	201
HphI	GGTGA	2 cut(s)	54, 202
Hpy166II	GTNNAC	2 cut(s)	42, 62
Hpy188I	TCNGA	3 cut(s)	82, 107, 235
Hpy8I	GTNNAC	2 cut(s)	42, 62
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	3 cut(s)	191, 277, 429
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	3 cut(s)	146, 260, 270
HpySE526I	ACGT	1 cut(s)	439
Hsp92I	GRCGYC	1 cut(s)	439
Hsp92II	CATG	2 cut(s)	191, 318
HspAI	GCGC	2 cut(s)	92, 424
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	337, 349
LpnPI	CCDG	6 cut(s)	20, 151, 178, 231, 365, 375
Lsp1109I	GCAGC	2 cut(s)	261, 413
MaeI	CTAG	2 cut(s)	384, 420
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	3 cut(s)	158, 221, 457
MalI	GATC	2 cut(s)	339, 351
MboI	GATC	2 cut(s)	337, 349
MboII	GAAGA	2 cut(s)	265, 444
MhlI	GDGCHC	2 cut(s)	116, 411
MluCI	AATT	1 cut(s)	125
MnlI	CCTC	4 cut(s)	78, 281, 292, 428
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	25
NdeII	GATC	2 cut(s)	337, 349
NlaIII	CATG	2 cut(s)	191, 318
PfeI	GAWTC	1 cut(s)	201
PkrI	GCNGC	3 cut(s)	276, 401, 428
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	387
PstI	CTGCAG	1 cut(s)	431
SatI	GCNGC	3 cut(s)	275, 400, 427
Sau3AI	GATC	2 cut(s)	337, 349
Sau96I	GGNCC	1 cut(s)	387
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	2 cut(s)	116, 411
SetI	ASST	7 cut(s)	39, 78, 89, 104, 228, 276, 442
SfcI	CTRYAG	1 cut(s)	427
Sse9I	AATT	1 cut(s)	125
SsiI	CCGC	1 cut(s)	399
SspI	AATATT	1 cut(s)	281
SspMI	CTAG	2 cut(s)	384, 420
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	2 cut(s)	394, 419
TaiI	ACGT	1 cut(s)	442
TasI	AATT	1 cut(s)	125
TauI	GCSGC	1 cut(s)	402
TfiI	GAWTC	1 cut(s)	201
TseI	GCWGC	2 cut(s)	274, 426
TspDTI	ATGAA	1 cut(s)	161
XapI	RAATTY	1 cut(s)	125
XmaJI	CCTAGG	1 cut(s)	419
XspI	CTAG	2 cut(s)	384, 420
ZraI	GACGTC	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.