Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8122894.1

Orthogroup ID

OG0014833

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 515

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8122894.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 304 bp

atgcaatacgaaaattgcaattataacttatacgcattattaatttgtgtctgtttggaacagtcatatttgccatctcaaacaccaagtgctttggtgaggctaagagaagaggagcttgttactttgcgtggcaatggccaaggagaacgcaagagctttgagagagtatacgactatgatgtttacaatgatcttggggatcctgattcaaaattaagcttaaaaagaactgtaattgggggcagcaaagagttcccctttcccaggcgatgccgaactgggcgaccaatgtgcgaagcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010597 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0031976 GO:0031984 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114 GO:0071704 GO:1901568

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

101

Amino Acids

11.66

Weight (kDa)

6.27

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014833)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g18070 pycom12g20360
rosa_chinensis	RchiOBHm_Chr6g0308121
rosa_laevigata	RLG00000030699
rosa_multiflora	Rmu_co8122894.1_g000001 Rmu_co8435975.1_g000001 Rmu_sc0005706.1_g000003 Rmu_sc0024733.1_g000003
rosa_roxburghii	Rroxscaffold_7G00160520
rosa_rugosa	Rorug06G0364300 Rorug06G0364300 Rorug06G0364300
rosa_samantha	Rh1BG012800 Rh1DG012900 Rh6AG472900 Rh6BG484100 Rh6CG489000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	171
AclWI	GGATC	2 cut(s)	197, 210
AcoI	YGGCCR	1 cut(s)	139
AdeI	CACNNNGTG	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	213
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	3 cut(s)	118, 159, 222
AluI	AGCT	3 cut(s)	118, 159, 222
AlwI	GGATC	2 cut(s)	197, 210
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	246
AseI	ATTAAT	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	109
BalI	TGGCCA	1 cut(s)	141
BamHI	GGATCC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	1 cut(s)	82
BcgI	CGANNNNNNTGC	1 cut(s)	276
BciT130I	CCWGG	1 cut(s)	268
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	268
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	263
BmuI	ACTGGG	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	142, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	2 cut(s)	142, 266
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMI	GCAATG	1 cut(s)	142
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	258
BshFI	GGCC	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	267
BsnI	GGCC	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	193, 202
BspANI	GGCC	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	204
BspPI	GGATC	2 cut(s)	197, 210
BsrDI	GCAATG	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	142, 266
BssMI	GATC	2 cut(s)	193, 202
BssNAI	GTATAC	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	142
Bst1107I	GTATAC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	2 cut(s)	63, 235
Bst6I	CTCTTC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	104
BstENI	CCTNNNNNAGG	1 cut(s)	265
BstKTI	GATC	2 cut(s)	196, 205
BstMBI	GATC	2 cut(s)	193, 202
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BstZ17I	GTATAC	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	286
CviJI	RGCY	5 cut(s)	103, 118, 141, 159, 222
CviKI_1	RGCY	5 cut(s)	103, 118, 141, 159, 222
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	2 cut(s)	195, 204
DpnII	GATC	2 cut(s)	193, 202
DraIII	CACNNNGTG	1 cut(s)	89
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	142
EcoNI	CCTNNNNNAGG	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	142
FaiI	YATR	5 cut(s)	24, 31, 67, 172, 180
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	247
Fsp4HI	GCNGC	1 cut(s)	247
GluI	GCNGC	1 cut(s)	247
HaeIII	GGCC	1 cut(s)	141
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	1 cut(s)	209
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	172, 187
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	2 cut(s)	172, 187
HpyCH4III	ACNGT	2 cut(s)	63, 235
HpyCH4V	TGCA	2 cut(s)	4, 18
HpyF3I	CTNAG	1 cut(s)	104
Kzo9I	GATC	2 cut(s)	193, 202
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	4 cut(s)	219, 253, 267, 280
Lsp1109I	GCAGC	1 cut(s)	258
LweI	GCATC	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	2 cut(s)	195, 204
MboI	GATC	2 cut(s)	193, 202
MboII	GAAGA	1 cut(s)	122
MflI	RGATCY	1 cut(s)	202
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	5 cut(s)	13, 19, 42, 215, 237
MluNI	TGGCCA	1 cut(s)	141
MnlI	CCTC	2 cut(s)	93, 106
Mox20I	TGGCCA	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	3 cut(s)	41, 218, 224
Msp20I	TGGCCA	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	268
NdeII	GATC	2 cut(s)	193, 202
NlaIV	GGNNCC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	248
PshBI	ATTAAT	1 cut(s)	41
PsiI	TTATAA	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	202
SaqAI	TTAA	3 cut(s)	41, 218, 224
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	2 cut(s)	193, 202
ScrFI	CCNGG	1 cut(s)	268
SetI	ASST	3 cut(s)	120, 161, 224
SfaNI	GCATC	1 cut(s)	263
Sse9I	AATT	5 cut(s)	13, 19, 42, 215, 237
StyD4I	CCNGG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	2 cut(s)	63, 235
TasI	AATT	5 cut(s)	13, 19, 42, 215, 237
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	3 cut(s)	41, 218, 224
Tru9I	TTAA	3 cut(s)	41, 218, 224
TseI	GCWGC	1 cut(s)	246
VspI	ATTAAT	1 cut(s)	41
XagI	CCTNNNNNAGG	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.