RchiOBHm_Chr6g0308121

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014833
Physical Location & Seq
Forward (+)
66224984 .. 66226397
1414 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27703

Sequence Viewer

Length: 393 bp
ATGTTCCAGACCCATGGTTCCAACAAAAAGATCAAAGGAACCGTGGTGCTGATGAAGAAGAATTTTTTTTACTTCAATGACTTTAATGCTTCGGTTCTCGCCCGTGTGAAGGAGTTTTGGGGCCGACGAGTTTCTTTGCAGCTCATTAGTGCTGTAATGGTGATTCTTACGTATATTCCGAGTGATACACCATTGGCACTACGCAAATACAGACAACAGGAACTTGAACAGTTGAGAGGAAATGGAACAGGAGAGCTAAATGAATGGGAGAGGGTCTACGACTATGCTTACTACAATGATCTCGGTGACCCAGACAGCGGTTCCAACTATGCTCGTCCAGTTCTTGGAGGGACTAGCCAGTATCCTTACTGTCACGGACACGTTCTCGAGTAG

Protein Analysis

130

Amino Acids

14.99

Weight (kDa)

8.65

Isoelectric Point (pI)

32.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipoxygenase PF00305 67 - 123 4.6e-23 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 344
AccI GTMKAC 1 cut(s) 276
AciI CCGC 1 cut(s) 318
AcsI RAATTY 1 cut(s) 61
AfiI CCNNNNNNNGG 3 cut(s) 109, 317, 344
AflIII ACRYGT 1 cut(s) 379
AgsI TTSAA 2 cut(s) 76, 227
AluBI AGCT 2 cut(s) 142, 256
AluI AGCT 2 cut(s) 142, 256
Ama87I CYCGRG 1 cut(s) 386
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 139
ApoI RAATTY 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 2 cut(s) 172, 317
AvaI CYCGRG 1 cut(s) 386
BbvI GCAGC 1 cut(s) 151
BciVI GTATCC 1 cut(s) 372
BfaI CTAG 1 cut(s) 354
BfuI GTATCC 1 cut(s) 372
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BmeT110I CYCGRG 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 4 cut(s) 19, 40, 122, 322
BsaAI YACGTR 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 13, 42
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 317, 344
Bse1I ACTGG 2 cut(s) 338, 358
BseDI CCNNGG 2 cut(s) 13, 42
BseLI CCNNNNNNNGG 3 cut(s) 109, 317, 344
BseNI ACTGG 2 cut(s) 338, 358
BseXI GCAGC 1 cut(s) 151
BshFI GGCC 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 386
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 3 cut(s) 109, 317, 344
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 1 cut(s) 123
BsoBI CYCGRG 1 cut(s) 386
Bsp143I GATC 2 cut(s) 30, 298
Bsp19I CCATGG 1 cut(s) 13
BspACI CCGC 1 cut(s) 318
BspANI GGCC 1 cut(s) 123
BspLI GGNNCC 4 cut(s) 19, 40, 122, 322
BsrI ACTGG 2 cut(s) 338, 358
BssECI CCNNGG 2 cut(s) 13, 42
BssMI GATC 2 cut(s) 30, 298
BssT1I CCWWGG 1 cut(s) 13
Bst4CI ACNGT 3 cut(s) 43, 231, 371
BstBAI YACGTR 1 cut(s) 171
BstDSI CCRYGG 2 cut(s) 13, 42
BstEII GGTNACC 1 cut(s) 305
BstKTI GATC 2 cut(s) 33, 301
BstMBI GATC 2 cut(s) 30, 298
BstPI GGTNACC 1 cut(s) 305
BstSNI TACGTA 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 151
BstXI CCANNNNNNTGG 1 cut(s) 14
BsuI GTATCC 1 cut(s) 372
BsuRI GGCC 1 cut(s) 123
BtgI CCRYGG 2 cut(s) 13, 42
Cfr13I GGNCC 1 cut(s) 121
CviAII CATG 1 cut(s) 14
CviJI RGCY 4 cut(s) 123, 142, 256, 357
CviKI_1 RGCY 4 cut(s) 123, 142, 256, 357
DpnI GATC 2 cut(s) 32, 300
DpnII GATC 2 cut(s) 30, 298
Eco105I TACGTA 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 13
Eco88I CYCGRG 1 cut(s) 386
Eco91I GGTNACC 1 cut(s) 305
EcoO65I GGTNACC 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 1 cut(s) 17
FaiI YATR 4 cut(s) 15, 174, 285, 330
FaqI GGGAC 1 cut(s) 364
FatI CATG 1 cut(s) 13
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 1 cut(s) 354
GluI GCNGC 1 cut(s) 140
HaeIII GGCC 1 cut(s) 123
Hin1II CATG 1 cut(s) 17
HinfI GANTC 1 cut(s) 163
HphI GGTGA 2 cut(s) 172, 317
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 2 cut(s) 7, 386
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 3 cut(s) 43, 231, 371
HpyCH4IV ACGT 2 cut(s) 170, 381
HpyCH4V TGCA 1 cut(s) 139
HpySE526I ACGT 2 cut(s) 170, 381
Hsp92II CATG 1 cut(s) 17
Kzo9I GATC 2 cut(s) 30, 298
LpnPI CCDG 6 cut(s) 20, 203, 234, 324, 351, 371
Lsp1109I GCAGC 1 cut(s) 151
MaeI CTAG 1 cut(s) 354
MaeII ACGT 2 cut(s) 170, 381
MaeIII GTNAC 2 cut(s) 305, 371
MalI GATC 2 cut(s) 32, 300
MboI GATC 2 cut(s) 30, 298
MboII GAAGA 2 cut(s) 67, 70
MluCI AATT 1 cut(s) 61
MmeI TCCRAC 2 cut(s) 45, 348
MnlI CCTC 3 cut(s) 230, 264, 341
MseI TTAA 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 318
NcoI CCATGG 1 cut(s) 13
NdeII GATC 2 cut(s) 30, 298
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 4 cut(s) 19, 40, 122, 322
NmuCI GTSAC 2 cut(s) 305, 371
PaeR7I CTCGAG 1 cut(s) 386
PcsI WCGNNNNNNNCGW 1 cut(s) 176
PfeI GAWTC 1 cut(s) 163
PflMI CCANNNNNTGG 1 cut(s) 344
PkrI GCNGC 1 cut(s) 141
Ppu21I YACGTR 1 cut(s) 171
PspEI GGTNACC 1 cut(s) 305
PspN4I GGNNCC 4 cut(s) 19, 40, 122, 322
PspPI GGNCC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 2 cut(s) 30, 298
Sau96I GGNCC 1 cut(s) 121
SetI ASST 4 cut(s) 144, 173, 258, 384
Sfr274I CTCGAG 1 cut(s) 386
SlaI CTCGAG 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
SnaBI TACGTA 1 cut(s) 171
Sse9I AATT 1 cut(s) 61
SsiI CCGC 1 cut(s) 318
SspMI CTAG 1 cut(s) 354
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 3 cut(s) 43, 231, 371
TaiI ACGT 2 cut(s) 173, 384
TaqI TCGA 1 cut(s) 387
TasI AATT 1 cut(s) 61
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseFI GTSAC 2 cut(s) 305, 371
TseI GCWGC 1 cut(s) 139
Tsp45I GTSAC 2 cut(s) 305, 371
TspDTI ATGAA 2 cut(s) 68, 276
TspGWI ACGGA 1 cut(s) 390
Van91I CCANNNNNTGG 1 cut(s) 344
XapI RAATTY 1 cut(s) 61
XhoI CTCGAG 1 cut(s) 386
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.