Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006612

Physical Location & Seq

Genomic Coordinates Reverse (-)

21650775 .. 21653249

Gene Structure 2475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCGCTGCAAGATGCGCACTTTCTTCAACTCCATGGCGTCGGCGGCAGTGGCGGTGGCGGCGTTTTTGCTTCTGGGTCCGAGCACCGTCGGCAAGTCCATGGCATTTGCTTCTTCTTCTTCCGAGACCACTATGCACACTAACAATTGGGCTGTTCTGGTCTGCACCTCTCGATTCTGGTTTAATTATCGACACATGGCCAACACTTTATCCCTGTATCGGACGGTTAAGCGCCTTGGAATACCTGATGAGAGGATAATACTCATGCTGGCTGATGACATGGCCTGTAATGCTAGAAACAAGTACCCTGCTCAAGTTTTTAACAACGAGAACCACAGACTCAACTTGTATGGAGATAATGTTGAGGTGGATTATCGAGGTTATGAAGTGACGGTTGAAAACTTTTTACGTGTATTGACTGGGCGCCATGAGAATGCTGTTCCAAGATCTAAGCGTCTTTTGAGTGATGAAGGAAGCCACATCCTTTTGTATATGACAGGACATGGAGGAGATGAGTTTTTAAAATTTCAAGACTCAGAAGAGCTCCAGAGTCCTGATTTAGCAGATGCAGTTAAACAGATGAAAGAAAAGCATAGATTCAAGGAGTTGCTGATAATGGTGGACACTTGCCAAGCTGCCACTCTCTTTAATCAGCTTCAATCACCTGGAGTTTTGGCTATTGGAAGTAGCATGAAAGGAGAGAACTCATACTCGCATCACTTGGACTCAGATGTCGGTGTTTCAGTTGTGGATCGTTTTACTTTTTACACCCTTGCGTTCTTTGAGAGGCTAAATATGTACGATAATGCTTCATTGAGCAGTCTTTTCACTTCCTATAACCCAAGCTTGTTGATGTCAACCGCATACTACCGAACAGATCTATACCAGCAACACCTGGAAGAGGTATTGAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003923 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016255 GO:0016787 GO:0019538 GO:0019637 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0034394 GO:0034613 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042765 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0090407 GO:0098796 GO:0098827 GO:0140096 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Peptidase_C13

Protein Analysis

306

Amino Acids

34.74

Weight (kDa)

6.36

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C13	PF01650	49 - 263	3.8e-45	Peptidase C13 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08750 AT1G08750 AT1G08750
fragaria_vesca	FvH4_5g04770 FvH4_5g04770 FvH4_5g04770 FvH4_6g02380 FvH4_6g02380 FvH4_6g02380 FvH4_6g02400
malus_domestica	MD04G1227700.v1.1
prunus_persica	Prupe.6G347300_v2.0.a1 Prupe.6G347300_v2.0.a1
pyrus_communis	pycom04g20120
rosa_chinensis	RchiOBHm_Chr3g0450151
rosa_laevigata	RLG00000025751
rosa_multiflora	Rmu_sc0010184.1_g000006 Rmu_sc0010184.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427910
rosa_rugosa	Rorug02G0625900
rosa_samantha	Rh3AG025200 Rh3BG025800 Rh3BG323000 Rh3CG024700 Rh3DG025800
rosa_wichuraiana	Rw3G002020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	731
Acc16I	TGCGCA	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	423
AciI	CCGC	4 cut(s)	44, 53, 59, 861
AclWI	GGATC	1 cut(s)	759
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	524
AcyI	GRCGYC	2 cut(s)	38, 424
AfaI	GTAC	2 cut(s)	305, 800
AfiI	CCNNNNNNNGG	2 cut(s)	219, 901
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	6 cut(s)	28, 398, 530, 601, 659, 910
AjnI	CCWGG	2 cut(s)	664, 894
AluBI	AGCT	4 cut(s)	544, 635, 655, 846
AluI	AGCT	4 cut(s)	544, 635, 655, 846
Alw21I	GWGCWC	2 cut(s)	86, 546
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	759
AoxI	GGCC	2 cut(s)	198, 282
ApeKI	GCWGC	2 cut(s)	6, 635
ApoI	RAATTY	1 cut(s)	524
AspLEI	GCGC	4 cut(s)	6, 18, 234, 426
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	654
AvaII	GGWCC	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	423
BanII	GRGCYC	1 cut(s)	546
Bbv12I	GWGCWC	2 cut(s)	86, 546
BbvI	GCAGC	1 cut(s)	622
BciT130I	CCWGG	2 cut(s)	666, 896
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	294
BfoI	RGCGCY	2 cut(s)	235, 427
BglII	AGATCT	2 cut(s)	446, 877
BisI	GCNGC	4 cut(s)	7, 45, 60, 636
BlsI	GCNGC	4 cut(s)	8, 46, 61, 637
Bme1390I	CCNGG	2 cut(s)	666, 896
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	78, 425
BmrFI	CCNGG	2 cut(s)	666, 896
BmrI	ACTGGG	1 cut(s)	429
BmsI	GCATC	3 cut(s)	3, 556, 724
BmuI	ACTGGG	1 cut(s)	429
BpmI	CTGGAG	2 cut(s)	530, 687
BpuEI	CTTGAG	1 cut(s)	297
BsaAI	YACGTR	1 cut(s)	410
BsaHI	GRCGYC	2 cut(s)	38, 424
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	33, 99, 235
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 901
Bse1I	ACTGG	1 cut(s)	424
BseBI	CCWGG	2 cut(s)	666, 896
BseDI	CCNNGG	3 cut(s)	33, 99, 235
BseGI	GGATG	1 cut(s)	480
BseLI	CCNNNNNNNGG	2 cut(s)	219, 901
BseMII	CTCAG	2 cut(s)	549, 741
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	1 cut(s)	522
BseXI	GCAGC	1 cut(s)	622
BsgI	GTGCAG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	200, 284
BshNI	GGYRCC	1 cut(s)	423
BsiHKAI	GWGCWC	2 cut(s)	86, 546
BslI	CCNNNNNNNGG	2 cut(s)	219, 901
BsmAI	GTCTC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	2 cut(s)	200, 284
Bso31I	GGTCTC	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	86, 546
Bsp143I	GATC	3 cut(s)	446, 751, 877
Bsp19I	CCATGG	2 cut(s)	33, 99
BspACI	CCGC	4 cut(s)	44, 53, 59, 861
BspANI	GGCC	2 cut(s)	200, 284
BspCNI	CTCAG	2 cut(s)	548, 740
BspLI	GGNNCC	2 cut(s)	78, 425
BspPI	GGATC	1 cut(s)	759
BspQI	GCTCTTC	1 cut(s)	534
BspT107I	GGYRCC	1 cut(s)	423
BspTNI	GGTCTC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	424
BssECI	CCNNGG	3 cut(s)	33, 99, 235
BssMI	GATC	3 cut(s)	446, 751, 877
BssNI	GRCGYC	2 cut(s)	38, 424
BssT1I	CCWWGG	3 cut(s)	33, 99, 235
Bst2UI	CCWGG	2 cut(s)	666, 896
Bst4CI	ACNGT	3 cut(s)	88, 226, 394
Bst6I	CTCTTC	2 cut(s)	534, 894
BstACI	GRCGYC	2 cut(s)	38, 424
BstBAI	YACGTR	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	3 cut(s)	450, 535, 727
BstDSI	CCRYGG	2 cut(s)	33, 99
BstENI	CCTNNNNNAGG	1 cut(s)	899
BstF5I	GGATG	1 cut(s)	480
BstH2I	RGCGCY	2 cut(s)	235, 427
BstHHI	GCGC	4 cut(s)	6, 18, 234, 426
BstKTI	GATC	3 cut(s)	449, 754, 880
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	3 cut(s)	446, 751, 877
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 44, 50, 59, 90, 290
BstNI	CCWGG	2 cut(s)	666, 896
BstSCI	CCNGG	2 cut(s)	664, 894
BstV1I	GCAGC	1 cut(s)	622
BstX2I	RGATCY	2 cut(s)	446, 877
BstYI	RGATCY	2 cut(s)	446, 877
BsuRI	GGCC	2 cut(s)	200, 284
BtgI	CCRYGG	2 cut(s)	33, 99
BtsCI	GGATG	1 cut(s)	480
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	4 cut(s)	6, 18, 234, 426
Cfr13I	GGNCC	1 cut(s)	77
CseI	GACGC	2 cut(s)	27, 443
Csp6I	GTAC	2 cut(s)	304, 799
CviAII	CATG	8 cut(s)	34, 100, 196, 265, 280, 428, 503, 691
CviQI	GTAC	2 cut(s)	304, 799
DdeI	CTNAG	3 cut(s)	450, 535, 727
DinI	GGCGCC	1 cut(s)	425
DpnI	GATC	3 cut(s)	448, 753, 879
DpnII	GATC	3 cut(s)	446, 751, 877
DraI	TTTAAA	1 cut(s)	522
DrdI	GACNNNNNNGTC	1 cut(s)	731
DseDI	GACNNNNNNGTC	1 cut(s)	731
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	534, 894
EarI	CTCTTC	2 cut(s)	534, 894
Ecl136II	GAGCTC	1 cut(s)	544
Eco130I	CCWWGG	3 cut(s)	33, 99, 235
Eco24I	GRGCYC	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	544
EcoICRI	GAGCTC	1 cut(s)	544
EcoNI	CCTNNNNNAGG	1 cut(s)	899
EcoRII	CCWGG	2 cut(s)	664, 894
EcoT14I	CCWWGG	3 cut(s)	33, 99, 235
EcoT38I	GRGCYC	1 cut(s)	546
EgeI	GGCGCC	1 cut(s)	425
EheI	GGCGCC	1 cut(s)	425
ErhI	CCWWGG	3 cut(s)	33, 99, 235
FaeI	CATG	8 cut(s)	37, 103, 199, 268, 283, 431, 506, 694
FatI	CATG	8 cut(s)	33, 99, 195, 264, 279, 427, 502, 690
Fnu4HI	GCNGC	4 cut(s)	7, 45, 60, 636
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	4 cut(s)	7, 45, 60, 636
FspAI	RTGCGCAY	1 cut(s)	17
FspBI	CTAG	1 cut(s)	294
FspI	TGCGCA	1 cut(s)	17
GlaI	GCGC	4 cut(s)	5, 17, 233, 425
GluI	GCNGC	4 cut(s)	7, 45, 60, 636
GsuI	CTGGAG	2 cut(s)	530, 687
HaeII	RGCGCY	2 cut(s)	235, 427
HaeIII	GGCC	2 cut(s)	200, 284
HgaI	GACGC	2 cut(s)	27, 443
HhaI	GCGC	4 cut(s)	6, 18, 234, 426
Hin1I	GRCGYC	2 cut(s)	38, 424
Hin1II	CATG	8 cut(s)	37, 103, 199, 268, 283, 431, 506, 694
Hin6I	GCGC	4 cut(s)	4, 16, 232, 424
HinP1I	GCGC	4 cut(s)	4, 16, 232, 424
HincII	GTYRAC	1 cut(s)	858
HindII	GTYRAC	1 cut(s)	858
HindIII	AAGCTT	1 cut(s)	844
HinfI	GANTC	6 cut(s)	174, 339, 533, 550, 597, 725
HphI	GGTGA	1 cut(s)	654
Hpy166II	GTNNAC	2 cut(s)	622, 858
Hpy188I	TCNGA	5 cut(s)	81, 124, 222, 538, 730
Hpy188III	TCNNGA	4 cut(s)	171, 530, 547, 554
Hpy8I	GTNNAC	2 cut(s)	622, 858
Hpy99I	CGWCG	2 cut(s)	43, 92
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	3 cut(s)	88, 226, 394
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	4 cut(s)	9, 136, 165, 569
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 44, 50, 59, 90, 290
HpyF3I	CTNAG	3 cut(s)	450, 535, 727
HpySE526I	ACGT	1 cut(s)	409
Hsp92I	GRCGYC	2 cut(s)	38, 424
Hsp92II	CATG	8 cut(s)	37, 103, 199, 268, 283, 431, 506, 694
HspAI	GCGC	4 cut(s)	4, 16, 232, 424
KasI	GGCGCC	1 cut(s)	423
Kzo9I	GATC	3 cut(s)	446, 751, 877
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	1 cut(s)	549
Lsp1109I	GCAGC	1 cut(s)	622
LweI	GCATC	3 cut(s)	3, 556, 724
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	3 cut(s)	448, 753, 879
MboI	GATC	3 cut(s)	446, 751, 877
MboII	GAAGA	6 cut(s)	16, 105, 108, 111, 551, 911
MfeI	CAATTG	1 cut(s)	145
MflI	RGATCY	2 cut(s)	446, 877
MhlI	GDGCHC	2 cut(s)	86, 546
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	3 cut(s)	145, 184, 524
MluNI	TGGCCA	1 cut(s)	200
Mly113I	GGCGCC	1 cut(s)	424
MlyI	GAGTC	4 cut(s)	333, 527, 559, 719
MnlI	CCTC	7 cut(s)	178, 246, 358, 371, 500, 780, 895
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	6 cut(s)	183, 228, 321, 521, 573, 648
MslI	CAYNNNNRTG	1 cut(s)	432
Msp20I	TGGCCA	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	666, 896
MunI	CAATTG	1 cut(s)	145
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	2 cut(s)	666, 896
MwoI	GCNNNNNNNGC	6 cut(s)	15, 44, 50, 59, 90, 290
NarI	GGCGCC	1 cut(s)	424
NcoI	CCATGG	2 cut(s)	33, 99
NdeII	GATC	3 cut(s)	446, 751, 877
NlaIII	CATG	8 cut(s)	37, 103, 199, 268, 283, 431, 506, 694
NlaIV	GGNNCC	2 cut(s)	78, 425
NmuCI	GTSAC	1 cut(s)	388
NsbI	TGCGCA	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	534
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	2 cut(s)	174, 597
PkrI	GCNGC	4 cut(s)	8, 46, 61, 637
PleI	GAGTC	4 cut(s)	333, 527, 558, 719
PluTI	GGCGCC	1 cut(s)	427
PpsI	GAGTC	4 cut(s)	333, 527, 558, 719
Ppu21I	YACGTR	1 cut(s)	410
Psp124BI	GAGCTC	1 cut(s)	546
Psp6I	CCWGG	2 cut(s)	664, 894
PspGI	CCWGG	2 cut(s)	664, 894
PspN4I	GGNNCC	2 cut(s)	78, 425
PspPI	GGNCC	1 cut(s)	77
PsuI	RGATCY	2 cut(s)	446, 877
RsaI	GTAC	2 cut(s)	305, 800
RsaNI	GTAC	2 cut(s)	304, 799
RseI	CAYNNNNRTG	1 cut(s)	432
SacI	GAGCTC	1 cut(s)	546
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	6 cut(s)	183, 228, 321, 521, 573, 648
SatI	GCNGC	4 cut(s)	7, 45, 60, 636
Sau3AI	GATC	3 cut(s)	446, 751, 877
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	4 cut(s)	333, 527, 559, 719
ScrFI	CCNGG	2 cut(s)	666, 896
SduI	GDGCHC	2 cut(s)	86, 546
SfaNI	GCATC	3 cut(s)	3, 556, 724
SfoI	GGCGCC	1 cut(s)	425
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
Sse9I	AATT	3 cut(s)	145, 184, 524
SsiI	CCGC	4 cut(s)	44, 53, 59, 861
SspDI	GGCGCC	1 cut(s)	423
SspMI	CTAG	1 cut(s)	294
SstI	GAGCTC	1 cut(s)	546
StyD4I	CCNGG	2 cut(s)	664, 894
StyI	CCWWGG	3 cut(s)	33, 99, 235
TaaI	ACNGT	3 cut(s)	88, 226, 394
TaiI	ACGT	1 cut(s)	412
TaqI	TCGA	3 cut(s)	172, 190, 376
TasI	AATT	3 cut(s)	145, 184, 524
TauI	GCSGC	2 cut(s)	47, 62
TfiI	GAWTC	2 cut(s)	174, 597
Tru1I	TTAA	6 cut(s)	183, 228, 321, 521, 573, 648
Tru9I	TTAA	6 cut(s)	183, 228, 321, 521, 573, 648
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	2 cut(s)	6, 635
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	5 cut(s)	399, 483, 596, 707, 801
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	77
XagI	CCTNNNNNAGG	1 cut(s)	899
XapI	RAATTY	1 cut(s)	524
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.