Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005571

Physical Location & Seq

Genomic Coordinates Forward (+)

21655962 .. 21658111

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGGAACGCCAGTGAATATCATTGTAGGTTCTCATGTCTGGGTTGAAGACCCAGAATTGGCTTGGATCGATGGACAGGTGTCGAAGATTACTGGACAGGAAGCTGAGATCGAGGGTAGCAATGGGAAGAAGGTTTGGTCTTCGAAATTTGCTTATTTTACAAAACTTTCTAGTATTACATTATTGTACTCTAATGAGATTCCCGTTCACTTTTTTGGTGCTATTAAGATGGTTGTCAAATTGGCAAAAATATATCCAAAAGATATGGAAGCTCCTGCTGCCGGAGTTGATGACATGACAAAGTTATCTTATCTGCATGAGCCTGGAGTTCTGCAGAATTTAAAAACTAGATACGAACTTAATGAAATCTATGTACGCATTCCTCCCTTCACATATACTGGAAATATCCTTATTGCCATTAACCCATTCCAAAGACTTCCCCATCTTTACGATGGTCACATGATGCAACAATACAAAGGAGCACCACTTGGAGAATTGAGCCCTCATGTTTTTGCAGTTGCAGATGTTGCATATAGGTTACTTTCAATCCTATTATATATGCTATATATTGCTCCGGCAATGATCAATGAGGGAAAAAGCAATTCAATTCTGGTCAGTGGTGAAAGTGGAGCAGGTAAAACTGAGACCACAAAAATGCTTATGCGGTACCTTGCATTTCTTGGTGGCCGGGCTGCAACTGAAGGACGGACAGTTGAACAGCAAGTTCTTGAAGTAAGACAATATCAAGTTATTACATGTTATCGTTTTGGTAAATTTGTTGAAATCCAATTTGATAAGCAAGGAAGAATCTCAGGAGCAGCCATTAGAACTTACCTTCTGGAACGGTCTCGTGTTTGCCAAATCTCTGATCCTGAACGGAACTACCATTGCTTCTACCTTCTTTGTGCTGCACCACAGGAGGAAATTGATAAATACAAGTTGGCAAATCCTAAATCATTTCGCTATCTTAACCAGTCACGCTGCTACGAACTGGTTGGTGTAAGTGATGCCCATGAATATCTTGCCACAAGGAGAGCTATGGATATTGTTGGAATAAGTGCGAAGGAGCAGGAAGCAATTTTTAGAGTAGTTGCTGCAATTCTTCATGTCGGAAATATTGAGTTTACCAAGGGCTCGGAAGTTGATTCATCAGTTCCAAAAGATGATAAAGCGAAGTTCCATCTCAAAATGACTGCAGAGCTTCTCATGTGCGACCCTGATGCACTGGAAGATGCATTATGCAAGCGTGTGATGATCGAACCTGAAGAAGTTATCAAGAGAAGTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000146 GO:0000166 GO:0000331 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003774 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0006928 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008144 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022414 GO:0030029 GO:0030036 GO:0030048 GO:0030154 GO:0030554 GO:0030898 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033275 GO:0035639 GO:0036094 GO:0040007 GO:0042623 GO:0042641 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043531 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051015 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051656 GO:0051704 GO:0060560 GO:0070252 GO:0071840 GO:0097159 GO:0097367 GO:0097435 GO:0097708 GO:0140027 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DIL IQ Myosin_N Myosin_head

Protein Analysis

430

Amino Acids

48.37

Weight (kDa)

6.62

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myosin_N	PF02736	9 - 45	3.8e-09	Myosin N-terminal SH3-like domain
Myosin_head	PF00063	96 - 426	1.4e-89	Myosin head (motor domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08730 AT1G08730 AT1G54560 AT1G54560
fragaria_vesca	FvH4_6g02450 FvH4_6g02450
malus_domestica	MD04G1227800.v1.1 MD12G1244600.v1.1
prunus_persica	Prupe.6G347100_v2.0.a1 Prupe.6G347100_v2.0.a1 Prupe.6G347100_v2.0.a1 Prupe.6G347100_v2.0.a1
pyrus_communis	pycom04g20130 pycom04g20140 pycom04g20150 pycom12g22440
rosa_chinensis	RchiOBHm_Chr3g0450241 RchiOBHm_Chr3g0450271
rosa_laevigata	RLG00000025743 RLG00000025747
rosa_multiflora	Rmu_sc0010184.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427950
rosa_rugosa	Rorug02G0626300 Rorug02G0626400
rosa_samantha	Rh3AG025600 Rh3BG026300 Rh3CG025300
rosa_wichuraiana	Rw3G002080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	623
Acc65I	GGTACC	1 cut(s)	666
AccB1I	GGYRCC	1 cut(s)	666
AciI	CCGC	1 cut(s)	664
AclWI	GGATC	2 cut(s)	74, 863
AcoI	YGGCCR	1 cut(s)	685
AcsI	RAATTY	3 cut(s)	146, 337, 773
AcuI	CTGAAG	2 cut(s)	720, 1284
AfaI	GTAC	3 cut(s)	188, 375, 668
AfiI	CCNNNNNNNGG	2 cut(s)	58, 281
AflIII	ACRYGT	1 cut(s)	755
AgsI	TTSAA	6 cut(s)	47, 546, 606, 716, 731, 782
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	4 cut(s)	104, 272, 1037, 1201
AluI	AGCT	4 cut(s)	104, 272, 1037, 1201
Alw21I	GWGCWC	1 cut(s)	484
Alw26I	GTCTC	2 cut(s)	638, 852
AlwI	GGATC	2 cut(s)	74, 863
AoxI	GGCC	1 cut(s)	685
ApeKI	GCWGC	6 cut(s)	278, 692, 818, 908, 981, 1094
ApoI	RAATTY	3 cut(s)	146, 337, 773
Asp718I	GGTACC	1 cut(s)	666
AsuC2I	CCSGG	1 cut(s)	689
AsuHPI	GGTGA	1 cut(s)	632
AsuII	TTCGAA	1 cut(s)	143
BanI	GGYRCC	1 cut(s)	666
BanII	GRGCYC	2 cut(s)	503, 1136
BauI	CACGAG	1 cut(s)	849
BbsI	GAAGAC	2 cut(s)	54, 132
Bbv12I	GWGCWC	1 cut(s)	484
BbvI	GCAGC	6 cut(s)	265, 679, 830, 895, 968, 1081
BccI	CCATC	5 cut(s)	65, 223, 446, 450, 1188
BcgI	CGANNNNNNTGC	2 cut(s)	1202, 1236
BciT130I	CCWGG	1 cut(s)	324
BclI	TGATCA	1 cut(s)	582
BcnI	CCSGG	1 cut(s)	689
BcoDI	GTCTC	2 cut(s)	638, 852
BfaI	CTAG	2 cut(s)	171, 348
BfmI	CTRYAG	2 cut(s)	332, 1194
BfuAI	ACCTGC	1 cut(s)	623
BisI	GCNGC	6 cut(s)	279, 693, 819, 909, 982, 1095
BlsI	GCNGC	6 cut(s)	280, 694, 820, 910, 983, 1096
Bme1390I	CCNGG	2 cut(s)	324, 689
BmiI	GGNNCC	1 cut(s)	668
BmrFI	CCNGG	2 cut(s)	324, 689
BmsI	GCATC	4 cut(s)	453, 997, 1210, 1222
BoxI	GACNNNNGTC	1 cut(s)	79
BpiI	GAAGAC	2 cut(s)	54, 132
BpmI	CTGGAG	1 cut(s)	345
Bpu14I	TTCGAA	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	689
Bsa29I	ATCGAT	1 cut(s)	69
BsaI	GGTCTC	2 cut(s)	638, 852
BsaJI	CCNNGG	1 cut(s)	1128
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 281
Bse1I	ACTGG	6 cut(s)	11, 97, 403, 973, 996, 1230
Bse3DI	GCAATG	3 cut(s)	127, 585, 886
BseBI	CCWGG	1 cut(s)	324
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	1128
BseLI	CCNNNNNNNGG	2 cut(s)	58, 281
BseMI	GCAATG	3 cut(s)	127, 585, 886
BseMII	CTCAG	3 cut(s)	96, 633, 825
BseNI	ACTGG	6 cut(s)	11, 97, 403, 973, 996, 1230
BseXI	GCAGC	6 cut(s)	265, 679, 830, 895, 968, 1081
BsgI	GTGCAG	1 cut(s)	894
BshFI	GGCC	1 cut(s)	687
BshNI	GGYRCC	1 cut(s)	666
BshVI	ATCGAT	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	484
BsiSI	CCGG	3 cut(s)	282, 575, 688
BslI	CCNNNNNNNGG	2 cut(s)	58, 281
BsmAI	GTCTC	2 cut(s)	638, 852
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	687
Bso31I	GGTCTC	2 cut(s)	638, 852
Bsp119I	TTCGAA	1 cut(s)	143
Bsp1286I	GDGCHC	3 cut(s)	484, 503, 1136
Bsp143I	GATC	5 cut(s)	66, 108, 582, 868, 1254
BspACI	CCGC	1 cut(s)	664
BspANI	GGCC	1 cut(s)	687
BspCNI	CTCAG	3 cut(s)	97, 634, 824
BspDI	ATCGAT	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	668
BspMAI	CTGCAG	2 cut(s)	336, 1198
BspMI	ACCTGC	1 cut(s)	623
BspPI	GGATC	2 cut(s)	74, 863
BspT104I	TTCGAA	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	666
BspTNI	GGTCTC	2 cut(s)	638, 852
BsrDI	GCAATG	3 cut(s)	127, 585, 886
BsrI	ACTGG	6 cut(s)	11, 97, 403, 973, 996, 1230
BssECI	CCNNGG	1 cut(s)	1128
BssMI	GATC	5 cut(s)	66, 108, 582, 868, 1254
BssSI	CACGAG	1 cut(s)	849
BssT1I	CCWWGG	1 cut(s)	1128
Bst2BI	CACGAG	1 cut(s)	849
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	712, 846
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstBI	TTCGAA	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	1244
BstDEI	CTNAG	3 cut(s)	105, 642, 811
BstKTI	GATC	5 cut(s)	69, 111, 585, 871, 1257
BstMAI	GTCTC	2 cut(s)	638, 852
BstMBI	GATC	5 cut(s)	66, 108, 582, 868, 1254
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 527
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	1 cut(s)	759
BstPAI	GACNNNNGTC	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	322, 687
BstSFI	CTRYAG	2 cut(s)	332, 1194
BstV1I	GCAGC	6 cut(s)	265, 679, 830, 895, 968, 1081
BstV2I	GAAGAC	2 cut(s)	54, 132
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	687
BsuTUI	ATCGAT	1 cut(s)	69
BtsIMutI	CAGTG	3 cut(s)	18, 622, 1223
BveI	ACCTGC	1 cut(s)	623
Cac8I	GCNNGC	1 cut(s)	1244
ClaI	ATCGAT	1 cut(s)	69
Csp6I	GTAC	3 cut(s)	187, 374, 667
CviAII	CATG	9 cut(s)	35, 295, 317, 460, 506, 756, 1013, 1106, 1207
CviQI	GTAC	3 cut(s)	187, 374, 667
DdeI	CTNAG	3 cut(s)	105, 642, 811
DpnI	GATC	5 cut(s)	68, 110, 584, 870, 1256
DpnII	GATC	5 cut(s)	66, 108, 582, 868, 1254
DraI	TTTAAA	1 cut(s)	342
EaeI	YGGCCR	1 cut(s)	685
Eco130I	CCWWGG	1 cut(s)	1128
Eco24I	GRGCYC	2 cut(s)	503, 1136
Eco31I	GGTCTC	2 cut(s)	638, 852
Eco57I	CTGAAG	2 cut(s)	720, 1284
EcoRII	CCWGG	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	1128
EcoT22I	ATGCAT	1 cut(s)	1237
EcoT38I	GRGCYC	2 cut(s)	503, 1136
ErhI	CCWWGG	1 cut(s)	1128
FaeI	CATG	9 cut(s)	38, 298, 320, 463, 509, 759, 1016, 1109, 1210
FatI	CATG	9 cut(s)	34, 294, 316, 459, 505, 755, 1012, 1105, 1206
FbaI	TGATCA	1 cut(s)	582
Fnu4HI	GCNGC	6 cut(s)	279, 693, 819, 909, 982, 1095
FriOI	GRGCYC	2 cut(s)	503, 1136
Fsp4HI	GCNGC	6 cut(s)	279, 693, 819, 909, 982, 1095
FspBI	CTAG	2 cut(s)	171, 348
GluI	GCNGC	6 cut(s)	279, 693, 819, 909, 982, 1095
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	687
HapII	CCGG	3 cut(s)	282, 575, 688
Hin1II	CATG	9 cut(s)	38, 298, 320, 463, 509, 759, 1016, 1109, 1210
HinfI	GANTC	3 cut(s)	199, 807, 1145
HpaII	CCGG	3 cut(s)	282, 575, 688
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	2 cut(s)	208, 1125
Hpy188I	TCNGA	3 cut(s)	868, 1112, 1138
Hpy188III	TCNNGA	5 cut(s)	728, 813, 839, 872, 1276
Hpy8I	GTNNAC	2 cut(s)	208, 1125
HpyAV	CCTTC	6 cut(s)	124, 397, 695, 845, 908, 1057
HpyCH4III	ACNGT	2 cut(s)	712, 846
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 527
HpyF3I	CTNAG	3 cut(s)	105, 642, 811
Hsp92II	CATG	9 cut(s)	38, 298, 320, 463, 509, 759, 1016, 1109, 1210
KpnI	GGTACC	1 cut(s)	670
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	5 cut(s)	66, 108, 582, 868, 1254
LmnI	GCTCC	6 cut(s)	277, 479, 577, 629, 815, 1066
Lsp1109I	GCAGC	6 cut(s)	265, 679, 830, 895, 968, 1081
LweI	GCATC	4 cut(s)	453, 997, 1210, 1222
MaeI	CTAG	2 cut(s)	171, 348
MaeIII	GTNAC	3 cut(s)	455, 537, 975
MalI	GATC	5 cut(s)	68, 110, 584, 870, 1256
MboI	GATC	5 cut(s)	66, 108, 582, 868, 1254
MboII	GAAGA	8 cut(s)	59, 97, 132, 139, 816, 1094, 1241, 1277
MhlI	GDGCHC	3 cut(s)	484, 503, 1136
MmeI	TCCRAC	2 cut(s)	1030, 1090
MnlI	CCTC	5 cut(s)	106, 393, 513, 583, 913
Mph1103I	ATGCAT	1 cut(s)	1237
MseI	TTAA	6 cut(s)	225, 341, 360, 420, 969, 1288
MslI	CAYNNNNRTG	1 cut(s)	653
MspI	CCGG	3 cut(s)	282, 575, 688
MspR9I	CCNGG	2 cut(s)	324, 689
Mva1269I	GAATGC	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	2 cut(s)	278, 527
NciI	CCSGG	1 cut(s)	689
NdeII	GATC	5 cut(s)	66, 108, 582, 868, 1254
NlaIII	CATG	9 cut(s)	38, 298, 320, 463, 509, 759, 1016, 1109, 1210
NlaIV	GGNNCC	1 cut(s)	668
NmuCI	GTSAC	2 cut(s)	455, 975
NsiI	ATGCAT	1 cut(s)	1237
NspI	RCATGY	1 cut(s)	759
NspV	TTCGAA	1 cut(s)	143
PciI	ACATGT	1 cut(s)	755
PctI	GAATGC	1 cut(s)	378
PfeI	GAWTC	3 cut(s)	199, 807, 1145
PkrI	GCNGC	6 cut(s)	280, 694, 820, 910, 983, 1096
PscI	ACATGT	1 cut(s)	755
PshAI	GACNNNNGTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	668
PstI	CTGCAG	2 cut(s)	336, 1198
RsaI	GTAC	3 cut(s)	188, 375, 668
RsaNI	GTAC	3 cut(s)	187, 374, 667
RseI	CAYNNNNRTG	1 cut(s)	653
SaqAI	TTAA	6 cut(s)	225, 341, 360, 420, 969, 1288
SatI	GCNGC	6 cut(s)	279, 693, 819, 909, 982, 1095
Sau3AI	GATC	5 cut(s)	66, 108, 582, 868, 1254
ScrFI	CCNGG	2 cut(s)	324, 689
SduI	GDGCHC	3 cut(s)	484, 503, 1136
SfaNI	GCATC	4 cut(s)	453, 997, 1210, 1222
SfcI	CTRYAG	2 cut(s)	332, 1194
SfuI	TTCGAA	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	653
SsiI	CCGC	1 cut(s)	664
SspI	AATATT	1 cut(s)	1117
SspMI	CTAG	2 cut(s)	171, 348
StyD4I	CCNGG	2 cut(s)	322, 687
StyI	CCWWGG	1 cut(s)	1128
TaaI	ACNGT	2 cut(s)	712, 846
TaqI	TCGA	5 cut(s)	69, 83, 111, 143, 1257
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	3 cut(s)	199, 807, 1145
Tru1I	TTAA	6 cut(s)	225, 341, 360, 420, 969, 1288
Tru9I	TTAA	6 cut(s)	225, 341, 360, 420, 969, 1288
TscAI	CASTG	3 cut(s)	18, 622, 1230
TseFI	GTSAC	2 cut(s)	455, 975
TseI	GCWGC	6 cut(s)	278, 692, 818, 908, 981, 1094
Tsp45I	GTSAC	2 cut(s)	455, 975
TspDTI	ATGAA	4 cut(s)	378, 1029, 1094, 1137
TspGWI	ACGGA	2 cut(s)	721, 892
TspRI	CASTG	3 cut(s)	18, 622, 1230
XapI	RAATTY	3 cut(s)	146, 337, 773
XceI	RCATGY	1 cut(s)	759
XcmI	CCANNNNNNNNNTGG	2 cut(s)	60, 449
XspI	CTAG	2 cut(s)	171, 348
Zsp2I	ATGCAT	1 cut(s)	1237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.