Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005571

Physical Location & Seq

Genomic Coordinates Forward (+)

21663981 .. 21665512

Gene Structure 1532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20150.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTAGTACCACCATTTTTAGTTCGTAAGGTGTTCACGCAAATATTCTCCTTCATCAATGTTCAGCTATTCAACAGTCTTCTATTAAGACGAGAATGCTGTTCGTTTAGCAATGGTGAATATGTTAAAGCTGGATTGGCTGAACTGGAGCATTGGTGCTATAAAGCAACAGATGAGTATGCAGGATCAGCTTGGGATGAACTCAAGCATATTCGGCAGGCTATTGGATTCCTGGTCATACATCAAAAACCGAAAAAGACGCTTGATGAAATAAGCCATGATCTATGCCCGGTCCTCAGTATACAGCAGCTATATCGTATCAGTACAATGTACTGGGATGACAAATATGGCACGCACAGCGTGTCCTCGGATGTTATATCGAATATGAGAGTGCTGATGACAGAGGATTCCAACAACGCCGTCAGTAATTCTTTCCTGCTGGATGACGATTCCAGCATTCCATTTTCCGTTGATGACATATCAAAGTCGATGAAGCAAATAGACATCTCCGACATTGAACCACCTCCTCTCATCCACGAGAACTCAGGCTTTAGTTTCTTGTTGCCGCGCGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000146 GO:0000166 GO:0000331 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003774 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0006928 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008144 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022414 GO:0030029 GO:0030036 GO:0030048 GO:0030154 GO:0030554 GO:0030898 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033275 GO:0035639 GO:0036094 GO:0040007 GO:0042623 GO:0042641 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043531 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051015 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051656 GO:0051704 GO:0060560 GO:0070252 GO:0071840 GO:0097159 GO:0097367 GO:0097435 GO:0097708 GO:0140027 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DIL IQ Myosin_N Myosin_head

Protein Analysis

193

Amino Acids

21.93

Weight (kDa)

5.06

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08730 AT1G08730 AT1G54560 AT1G54560
fragaria_vesca	FvH4_6g02450 FvH4_6g02450
malus_domestica	MD04G1227800.v1.1 MD12G1244600.v1.1
prunus_persica	Prupe.6G347100_v2.0.a1 Prupe.6G347100_v2.0.a1 Prupe.6G347100_v2.0.a1 Prupe.6G347100_v2.0.a1
pyrus_communis	pycom04g20130 pycom04g20140 pycom04g20150 pycom12g22440
rosa_chinensis	RchiOBHm_Chr3g0450241 RchiOBHm_Chr3g0450271
rosa_laevigata	RLG00000025743 RLG00000025747
rosa_multiflora	Rmu_sc0010184.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427950
rosa_rugosa	Rorug02G0626300 Rorug02G0626400
rosa_samantha	Rh3AG025600 Rh3BG026300 Rh3CG025300
rosa_wichuraiana	Rw3G002080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	301
AccII	CGCG	2 cut(s)	568, 570
AciI	CCGC	1 cut(s)	566
AclWI	GGATC	1 cut(s)	193
AdeI	CACNNNGTG	1 cut(s)	361
AfaI	GTAC	3 cut(s)	9, 325, 332
AgsI	TTSAA	2 cut(s)	73, 518
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	4 cut(s)	67, 131, 191, 310
AluI	AGCT	4 cut(s)	67, 131, 191, 310
AlwI	GGATC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	307
AspLEI	GCGC	2 cut(s)	570, 572
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	292
BauI	CACGAG	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	319
BceAI	ACGGC	1 cut(s)	404
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	290
BisI	GCNGC	2 cut(s)	308, 566
BlsI	GCNGC	2 cut(s)	309, 567
Bme1390I	CCNGG	2 cut(s)	233, 290
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmrFI	CCNGG	2 cut(s)	233, 290
BmrI	ACTGGG	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bse1I	ACTGG	2 cut(s)	150, 338
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	5 cut(s)	202, 343, 376, 448, 531
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	2 cut(s)	310, 558
BseNI	ACTGG	2 cut(s)	150, 338
BsePI	GCGCGC	1 cut(s)	568
BseRI	GAGGAG	1 cut(s)	516
BseXI	GCAGC	1 cut(s)	319
Bsh1236I	CGCG	2 cut(s)	568, 570
BsiSI	CCGG	1 cut(s)	290
BsmI	GAATGC	2 cut(s)	101, 456
Bsp143I	GATC	2 cut(s)	185, 280
BspACI	CCGC	1 cut(s)	566
BspCNI	CTCAG	2 cut(s)	309, 557
BspFNI	CGCG	2 cut(s)	568, 570
BspPI	GGATC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	2 cut(s)	150, 338
BssECI	CCNNGG	1 cut(s)	366
BssHII	GCGCGC	1 cut(s)	568
BssMI	GATC	2 cut(s)	185, 280
BssNAI	GTATAC	1 cut(s)	302
BssSI	CACGAG	1 cut(s)	536
Bst1107I	GTATAC	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	536
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	77
BstC8I	GCNNGC	3 cut(s)	219, 353, 570
BstDEI	CTNAG	2 cut(s)	296, 544
BstF5I	GGATG	5 cut(s)	202, 343, 376, 448, 531
BstFNI	CGCG	2 cut(s)	568, 570
BstHHI	GCGC	2 cut(s)	570, 572
BstKTI	GATC	2 cut(s)	188, 283
BstMBI	GATC	2 cut(s)	185, 280
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 188, 214, 357
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	231, 288
BstUI	CGCG	2 cut(s)	568, 570
BstV1I	GCAGC	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	71
BstZ17I	GTATAC	1 cut(s)	302
BtsCI	GGATG	5 cut(s)	202, 343, 376, 448, 531
Cac8I	GCNNGC	3 cut(s)	219, 353, 570
CfoI	GCGC	2 cut(s)	570, 572
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	3 cut(s)	8, 324, 331
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	8 cut(s)	67, 131, 140, 191, 221, 276, 310, 549
CviKI_1	RGCY	8 cut(s)	67, 131, 140, 191, 221, 276, 310, 549
CviQI	GTAC	3 cut(s)	8, 324, 331
DdeI	CTNAG	2 cut(s)	296, 544
DpnI	GATC	2 cut(s)	187, 282
DpnII	GATC	2 cut(s)	185, 280
DraIII	CACNNNGTG	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	231
FaeI	CATG	1 cut(s)	281
FatI	CATG	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	2 cut(s)	308, 566
FokI	GGATG	5 cut(s)	209, 350, 383, 455, 518
Fsp4HI	GCNGC	2 cut(s)	308, 566
GlaI	GCGC	2 cut(s)	569, 571
GluI	GCNGC	2 cut(s)	308, 566
GsuI	CTGGAG	1 cut(s)	167
HapII	CCGG	1 cut(s)	290
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	2 cut(s)	570, 572
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	2 cut(s)	568, 570
HinP1I	GCGC	2 cut(s)	568, 570
HinfI	GANTC	3 cut(s)	228, 407, 449
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	2 cut(s)	36, 302
Hpy188I	TCNGA	2 cut(s)	370, 511
Hpy8I	GTNNAC	2 cut(s)	36, 302
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 188, 214, 357
HpyF3I	CTNAG	2 cut(s)	296, 544
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	2 cut(s)	568, 570
Kzo9I	GATC	2 cut(s)	185, 280
LmnI	GCTCC	1 cut(s)	148
Lsp1109I	GCAGC	1 cut(s)	319
MalI	GATC	2 cut(s)	187, 282
MboI	GATC	2 cut(s)	185, 280
MboII	GAAGA	1 cut(s)	71
MluCI	AATT	1 cut(s)	427
MmeI	TCCRAC	2 cut(s)	435, 534
MnlI	CCTC	5 cut(s)	305, 376, 397, 534, 537
MseI	TTAA	2 cut(s)	86, 126
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	2 cut(s)	233, 290
Mva1269I	GAATGC	2 cut(s)	101, 456
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	2 cut(s)	568, 570
MwoI	GCNNNNNNNGC	4 cut(s)	137, 188, 214, 357
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	2 cut(s)	185, 280
NlaIII	CATG	1 cut(s)	281
PauI	GCGCGC	1 cut(s)	568
PctI	GAATGC	2 cut(s)	101, 456
PfeI	GAWTC	3 cut(s)	228, 407, 449
PkrI	GCNGC	2 cut(s)	309, 567
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	292
PteI	GCGCGC	1 cut(s)	568
RsaI	GTAC	3 cut(s)	9, 325, 332
RsaNI	GTAC	3 cut(s)	8, 324, 331
SaqAI	TTAA	2 cut(s)	86, 126
SatI	GCNGC	2 cut(s)	308, 566
Sau3AI	GATC	2 cut(s)	185, 280
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	2 cut(s)	233, 290
SetI	ASST	6 cut(s)	33, 69, 133, 193, 312, 526
SinI	GGWCC	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	427
SsiI	CCGC	1 cut(s)	566
SspI	AATATT	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	231, 288
TaaI	ACNGT	1 cut(s)	77
TaqI	TCGA	2 cut(s)	380, 488
TasI	AATT	1 cut(s)	427
TatI	WGTACW	2 cut(s)	323, 330
TauI	GCSGC	1 cut(s)	568
TfiI	GAWTC	3 cut(s)	228, 407, 449
Tru1I	TTAA	2 cut(s)	86, 126
Tru9I	TTAA	2 cut(s)	86, 126
TseI	GCWGC	1 cut(s)	307
TspDTI	ATGAA	4 cut(s)	43, 213, 282, 506
TspGWI	ACGGA	1 cut(s)	457
VpaK11BI	GGWCC	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.