RLG00000025743
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
48025828 .. 48026688
861 bp
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UTR
Exon/CDS
Intron
RLM00000025743

Sequence Viewer

Length: 351 bp
ATGCAGTATGAAGGTTCAGCTTGGGATGAACTCAAGCATATTAGACAAGCCATTGGATTCCTGGTCCTCAGTATACAGCAGCTATATCGTATCAGTACAATGTACTGGGATGACAAATATGGCACACATAGCGTGTCCTCGGATGTTATATCCAATATGAGAGTGTTGATGACAGAAGATTCTAACAATGCTGTCAGTAATTCTTTCCTCTTGGATGACGATTTCAGCATTCCATTTTCAGTTGATGACTTATCAAAGTCTATGGAACAAATAGACATTTCCGAGATTGAACCCCCGCCACTTATTGGTGAAAACTCAGGCTTTAGTTTCTTGTTGCCGGGTGCAGATTGA

Protein Analysis

117

Amino Acids

13.07

Weight (kDa)

4.12

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 305
AccI GTMKAC 1 cut(s) 73
AciI CCGC 1 cut(s) 296
AfaI GTAC 2 cut(s) 97, 104
AfiI CCNNNNNNNGG 1 cut(s) 305
AgsI TTSAA 1 cut(s) 290
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 2 cut(s) 20, 82
AluI AGCT 2 cut(s) 20, 82
ApeKI GCWGC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 320
AvaII GGWCC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 91
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BciT130I CCWGG 1 cut(s) 62
BcnI CCSGG 1 cut(s) 339
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme1390I CCNGG 2 cut(s) 62, 339
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmrFI CCNGG 2 cut(s) 62, 339
BmrI ACTGGG 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 115
BpuEI CTTGAG 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse1I ACTGG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 4 cut(s) 31, 115, 148, 220
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMII CTCAG 2 cut(s) 82, 330
BseNI ACTGG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 305
BsmI GAATGC 1 cut(s) 228
BspACI CCGC 1 cut(s) 296
BspCNI CTCAG 2 cut(s) 81, 329
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 138
BssNAI GTATAC 1 cut(s) 74
Bst1107I GTATAC 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 62
BstDEI CTNAG 2 cut(s) 68, 316
BstF5I GGATG 4 cut(s) 31, 115, 148, 220
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 60, 337
BstV1I GCAGC 1 cut(s) 91
BstZ17I GTATAC 1 cut(s) 74
BtsCI GGATG 4 cut(s) 31, 115, 148, 220
Cfr13I GGNCC 1 cut(s) 64
Csp6I GTAC 2 cut(s) 96, 103
CviJI RGCY 4 cut(s) 20, 50, 82, 321
CviKI_1 RGCY 4 cut(s) 20, 50, 82, 321
CviQI GTAC 2 cut(s) 96, 103
DdeI CTNAG 2 cut(s) 68, 316
Eco47I GGWCC 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 60
FaiI YATR 9 cut(s) 9, 39, 74, 85, 120, 129, 149, 158, 263
FauI CCCGC 1 cut(s) 303
FblI GTMKAC 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 4 cut(s) 38, 122, 155, 227
Fsp4HI GCNGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 80
HapII CCGG 1 cut(s) 338
HinfI GANTC 2 cut(s) 57, 179
HpaII CCGG 1 cut(s) 338
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 142, 283
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 5
HpyCH4V TGCA 2 cut(s) 4, 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpyF3I CTNAG 2 cut(s) 68, 316
LpnPI CCDG 4 cut(s) 47, 74, 91, 303
Lsp1109I GCAGC 1 cut(s) 91
MboII GAAGA 1 cut(s) 188
MluCI AATT 1 cut(s) 199
MnlI CCTC 3 cut(s) 77, 148, 218
MspI CCGG 1 cut(s) 338
MspR9I CCNGG 2 cut(s) 62, 339
Mva1269I GAATGC 1 cut(s) 228
MvaI CCWGG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 129
NciI CCSGG 1 cut(s) 339
PctI GAATGC 1 cut(s) 228
PfeI GAWTC 2 cut(s) 57, 179
PflMI CCANNNNNTGG 1 cut(s) 305
PkrI GCNGC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspPI GGNCC 1 cut(s) 64
RsaI GTAC 2 cut(s) 97, 104
RsaNI GTAC 2 cut(s) 96, 103
SatI GCNGC 1 cut(s) 80
Sau96I GGNCC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 62, 339
SetI ASST 3 cut(s) 16, 22, 84
SinI GGWCC 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 1 cut(s) 199
SsiI CCGC 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 60, 337
TasI AATT 1 cut(s) 199
TatI WGTACW 2 cut(s) 95, 102
TfiI GAWTC 2 cut(s) 57, 179
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 24, 42
Van91I CCANNNNNTGG 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 64
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.