Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005571

Physical Location & Seq

Genomic Coordinates Forward (+)

1859732 .. 1862726

Gene Structure 2995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41761

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGATCTGCATAGTGCTTCGATTAACCACAGGGAGCCTGAATTGGAGGATAAGCCACAGAAATCACTAAATGAAAAACAGCAGGAGAATCAAGAGCTGCTCATTCGATGCATTGCACAACACCCAGGCTTTGCAGGGAACAGGCCTATTGCTGCCTGTATCATATATAAATGCCTTTTGCAGTGGAGATCATTTGAAGTTGAGCGGACTAGCATTTTTGATAGGATTATTCAGACCATAGGCAATGCCATTGAGACCCAGGATAACAATGATATCTTGGCCTATTGGTTATCCAATGCCTCAACACTTCTATTACTACTCCAGCGTACACTGAAACCAAGTGGTGCTGCAGGAATAGCACCGCAACGACGTCGATCATCATCAGCTACTTTATTTGGAAGGATGACACAAAGTTTCCGTGGAACCCCACAAGGTGTCAATCTTTCCTTAATCAACGGTGGAGCGAGTACTGGAGTGGACACTTTACGGCAAGTTGAAGCAAAGTACCCAGCTTTGCTATTCAAACAGCAACTCACGGCATATGTAGAAAAGATTTATGGGATGATTCGAGATAATTTGAAGAAAGAAATTTCGCCATTGCTTGGATTGTGCATCCAGGTACCTCCATTTTTAGTCCGCAAGGTGTTCACACAGATATTCTCCTTCATCAATGTTCAGTTATTCAACAGCCTTCTATTACGACGAGAGTGCTGTTCGTTTAGTAATGGGGAATATGTAAAAGCTGGCTTGGCTGAGTTGGAGCATTGGTGCTATAAAGCAACAGACGAGTATGCAGGTTCAGCTTGGGATGAACTCAAGCATATTAGGCAAGCCATTGGATTCCTGGTCCTCAGTATACAGCAGCTATATCGTATGAGTACAATGTACTGGGATGACAAATATGGCACGCATAGCGTGTCCTCGGATGTTATATCCAATATGAGAGTGTTGATGACAGAAGATTCTAAAAATGCTGTCAGTAATTCTTTCCTCTTGGATGACGATTCCAGCATTCCATTTTCAGTTGATGACTTATCAAAGTCGATGGAACAAATAGACATTTCCGACATTGAACCCCCACCACTTATTCGTGAAAACTCAGGCTTTAGTTTCTTGTTGCCGCGTGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000146 GO:0000166 GO:0000331 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003774 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0006928 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008144 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022414 GO:0030029 GO:0030036 GO:0030048 GO:0030154 GO:0030554 GO:0030898 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033275 GO:0035639 GO:0036094 GO:0040007 GO:0042623 GO:0042641 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043531 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051015 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051656 GO:0051704 GO:0060560 GO:0070252 GO:0071840 GO:0097159 GO:0097367 GO:0097435 GO:0097708 GO:0140027 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DIL IQ Myosin_N Myosin_head

Protein Analysis

377

Amino Acids

42.62

Weight (kDa)

5.95

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIL	PF01843	214 - 290	5.1e-21	DIL domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08730 AT1G08730 AT1G54560 AT1G54560
fragaria_vesca	FvH4_6g02450 FvH4_6g02450
malus_domestica	MD04G1227800.v1.1 MD12G1244600.v1.1
prunus_persica	Prupe.6G347100_v2.0.a1 Prupe.6G347100_v2.0.a1 Prupe.6G347100_v2.0.a1 Prupe.6G347100_v2.0.a1
pyrus_communis	pycom04g20130 pycom04g20140 pycom04g20150 pycom12g22440
rosa_chinensis	RchiOBHm_Chr3g0450241 RchiOBHm_Chr3g0450271
rosa_laevigata	RLG00000025743 RLG00000025747
rosa_multiflora	Rmu_sc0010184.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427950
rosa_rugosa	Rorug02G0626300 Rorug02G0626400
rosa_samantha	Rh3AG025600 Rh3BG026300 Rh3CG025300
rosa_wichuraiana	Rw3G002080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	373
Acc36I	ACCTGC	1 cut(s)	785
Acc65I	GGTACC	1 cut(s)	619
AccB1I	GGYRCC	1 cut(s)	619
AccB7I	CCANNNNNTGG	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	205
AccI	GTMKAC	1 cut(s)	856
AccII	CGCG	1 cut(s)	1123
AciI	CCGC	4 cut(s)	205, 362, 637, 1121
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	588
AcyI	GRCGYC	1 cut(s)	370
AdeI	CACNNNGTG	1 cut(s)	434
AfaI	GTAC	6 cut(s)	328, 469, 506, 621, 880, 887
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgsI	TTSAA	6 cut(s)	197, 497, 523, 580, 685, 1073
AjnI	CCWGG	4 cut(s)	124, 258, 615, 843
AluBI	AGCT	6 cut(s)	97, 386, 512, 743, 803, 865
AluI	AGCT	6 cut(s)	97, 386, 512, 743, 803, 865
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	143, 279
ApeKI	GCWGC	4 cut(s)	97, 152, 347, 862
ApoI	RAATTY	1 cut(s)	588
Asp718I	GGTACC	1 cut(s)	619
AspS9I	GGNCC	1 cut(s)	847
AvaII	GGWCC	1 cut(s)	847
BanI	GGYRCC	1 cut(s)	619
BbvI	GCAGC	4 cut(s)	84, 139, 334, 874
BccI	CCATC	1 cut(s)	1039
BceAI	ACGGC	2 cut(s)	503, 552
BcgI	CGANNNNNNTGC	6 cut(s)	353, 387, 690, 724, 851, 885
BciT130I	CCWGG	4 cut(s)	126, 260, 617, 845
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	348
BfuAI	ACCTGC	1 cut(s)	785
BisI	GCNGC	5 cut(s)	98, 153, 348, 863, 1121
BlsI	GCNGC	5 cut(s)	99, 154, 349, 864, 1122
BmcAI	AGTACT	1 cut(s)	469
Bme1390I	CCNGG	4 cut(s)	126, 260, 617, 845
Bme18I	GGWCC	1 cut(s)	847
BmgT120I	GGNCC	1 cut(s)	847
BmiI	GGNNCC	3 cut(s)	36, 424, 621
BmrFI	CCNGG	4 cut(s)	126, 260, 617, 845
BmrI	ACTGGG	1 cut(s)	898
BmsI	GCATC	2 cut(s)	98, 621
BmuI	ACTGGG	1 cut(s)	898
BpmI	CTGGAG	2 cut(s)	305, 492
BpuEI	CTTGAG	1 cut(s)	800
BsaBI	GATNNNNATC	1 cut(s)	379
BsaHI	GRCGYC	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	4 cut(s)	124, 258, 418, 921
BsaXI	ACNNNNNCTCC	2 cut(s)	752, 782
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse1I	ACTGG	2 cut(s)	475, 893
Bse3DI	GCAATG	3 cut(s)	111, 250, 596
Bse8I	GATNNNNATC	1 cut(s)	379
BseBI	CCWGG	4 cut(s)	126, 260, 617, 845
BseDI	CCNNGG	4 cut(s)	124, 258, 418, 921
BseGI	GGATG	7 cut(s)	408, 567, 612, 814, 898, 931, 1003
BseJI	GATNNNNATC	1 cut(s)	379
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMI	GCAATG	3 cut(s)	111, 250, 596
BseMII	CTCAG	3 cut(s)	744, 865, 1113
BseNI	ACTGG	2 cut(s)	475, 893
BseXI	GCAGC	4 cut(s)	84, 139, 334, 874
BseYI	CCCAGC	1 cut(s)	508
Bsh1236I	CGCG	1 cut(s)	1123
BshFI	GGCC	2 cut(s)	145, 281
BshNI	GGYRCC	1 cut(s)	619
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	1011
BsnI	GGCC	2 cut(s)	145, 281
Bso31I	GGTCTC	1 cut(s)	248
Bsp143I	GATC	3 cut(s)	4, 188, 374
BspACI	CCGC	4 cut(s)	205, 362, 637, 1121
BspANI	GGCC	2 cut(s)	145, 281
BspCNI	CTCAG	3 cut(s)	745, 864, 1112
BspFNI	CGCG	1 cut(s)	1123
BspLI	GGNNCC	3 cut(s)	36, 424, 621
BspMAI	CTGCAG	1 cut(s)	352
BspMI	ACCTGC	1 cut(s)	785
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	619
BspTNI	GGTCTC	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	205
BsrDI	GCAATG	3 cut(s)	111, 250, 596
BsrI	ACTGG	2 cut(s)	475, 893
BssECI	CCNNGG	4 cut(s)	124, 258, 418, 921
BssMI	GATC	3 cut(s)	4, 188, 374
BssNAI	GTATAC	1 cut(s)	857
BssNI	GRCGYC	1 cut(s)	370
Bst1107I	GTATAC	1 cut(s)	857
Bst2UI	CCWGG	4 cut(s)	126, 260, 617, 845
Bst4CI	ACNGT	1 cut(s)	458
BstACI	GRCGYC	1 cut(s)	370
BstC8I	GCNNGC	4 cut(s)	745, 831, 908, 1125
BstDEI	CTNAG	3 cut(s)	753, 851, 1099
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	7 cut(s)	408, 567, 612, 814, 898, 931, 1003
BstFNI	CGCG	1 cut(s)	1123
BstKTI	GATC	3 cut(s)	7, 191, 377
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	3 cut(s)	4, 188, 374
BstMWI	GCNNNNNNNGC	5 cut(s)	356, 749, 800, 826, 912
BstNI	CCWGG	4 cut(s)	126, 260, 617, 845
BstSCI	CCNGG	4 cut(s)	124, 258, 615, 843
BstSFI	CTRYAG	1 cut(s)	348
BstUI	CGCG	1 cut(s)	1123
BstV1I	GCAGC	4 cut(s)	84, 139, 334, 874
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZ17I	GTATAC	1 cut(s)	857
BsuRI	GGCC	2 cut(s)	145, 281
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	7 cut(s)	408, 567, 612, 814, 898, 931, 1003
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	2 cut(s)	188, 329
BveI	ACCTGC	1 cut(s)	785
Cac8I	GCNNGC	4 cut(s)	745, 831, 908, 1125
Cfr13I	GGNCC	1 cut(s)	847
Csp6I	GTAC	6 cut(s)	327, 468, 505, 620, 879, 886
CviQI	GTAC	6 cut(s)	327, 468, 505, 620, 879, 886
DdeI	CTNAG	3 cut(s)	753, 851, 1099
DpnI	GATC	3 cut(s)	6, 190, 376
DpnII	GATC	3 cut(s)	4, 188, 374
DraIII	CACNNNGTG	1 cut(s)	434
Eco147I	AGGCCT	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	248
Eco32I	GATATC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	847
EcoRII	CCWGG	4 cut(s)	124, 258, 615, 843
EcoRV	GATATC	1 cut(s)	274
EcoT22I	ATGCAT	1 cut(s)	113
FauNDI	CATATG	1 cut(s)	541
FblI	GTMKAC	1 cut(s)	856
Fnu4HI	GCNGC	5 cut(s)	98, 153, 348, 863, 1121
FokI	GGATG	7 cut(s)	415, 574, 599, 821, 905, 938, 1010
Fsp4HI	GCNGC	5 cut(s)	98, 153, 348, 863, 1121
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	5 cut(s)	98, 153, 348, 863, 1121
GsaI	CCCAGC	1 cut(s)	512
GsuI	CTGGAG	2 cut(s)	305, 492
HaeIII	GGCC	2 cut(s)	145, 281
Hin1I	GRCGYC	1 cut(s)	370
HinfI	GANTC	5 cut(s)	88, 565, 840, 962, 1004
Hpy166II	GTNNAC	4 cut(s)	329, 478, 648, 857
Hpy188I	TCNGA	3 cut(s)	234, 925, 1066
Hpy188III	TCNNGA	3 cut(s)	92, 569, 1091
Hpy8I	GTNNAC	4 cut(s)	329, 478, 648, 857
Hpy99I	CGWCG	3 cut(s)	372, 375, 705
HpyAV	CCTTC	3 cut(s)	393, 673, 701
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	9 cut(s)	10, 111, 116, 134, 181, 350, 612, 794, 1127
HpyF10VI	GCNNNNNNNGC	5 cut(s)	356, 749, 800, 826, 912
HpyF3I	CTNAG	3 cut(s)	753, 851, 1099
HpySE526I	ACGT	1 cut(s)	370
Hsp92I	GRCGYC	1 cut(s)	370
KpnI	GGTACC	1 cut(s)	623
Kzo9I	GATC	3 cut(s)	4, 188, 374
LmnI	GCTCC	3 cut(s)	34, 461, 760
Lsp1109I	GCAGC	4 cut(s)	84, 139, 334, 874
LweI	GCATC	2 cut(s)	98, 621
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	370
MalI	GATC	3 cut(s)	6, 190, 376
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	3 cut(s)	4, 188, 374
MboII	GAAGA	2 cut(s)	592, 971
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	4 cut(s)	41, 574, 588, 982
MmeI	TCCRAC	2 cut(s)	738, 1089
MnlI	CCTC	6 cut(s)	40, 310, 633, 860, 931, 1001
Mph1103I	ATGCAT	1 cut(s)	113
MseI	TTAA	2 cut(s)	24, 449
MspR9I	CCNGG	4 cut(s)	126, 260, 617, 845
Mva1269I	GAATGC	1 cut(s)	1011
MvaI	CCWGG	4 cut(s)	126, 260, 617, 845
MvnI	CGCG	1 cut(s)	1123
MwoI	GCNNNNNNNGC	5 cut(s)	356, 749, 800, 826, 912
NdeI	CATATG	1 cut(s)	541
NdeII	GATC	3 cut(s)	4, 188, 374
NlaIV	GGNNCC	3 cut(s)	36, 424, 621
NsiI	ATGCAT	1 cut(s)	113
PceI	AGGCCT	1 cut(s)	145
PctI	GAATGC	1 cut(s)	1011
PfeI	GAWTC	5 cut(s)	88, 565, 840, 962, 1004
PflMI	CCANNNNNTGG	1 cut(s)	602
PkrI	GCNGC	5 cut(s)	99, 154, 349, 864, 1122
Psp6I	CCWGG	4 cut(s)	124, 258, 615, 843
PspFI	CCCAGC	1 cut(s)	508
PspGI	CCWGG	4 cut(s)	124, 258, 615, 843
PspN4I	GGNNCC	3 cut(s)	36, 424, 621
PspPI	GGNCC	1 cut(s)	847
PstI	CTGCAG	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	6 cut(s)	328, 469, 506, 621, 880, 887
RsaNI	GTAC	6 cut(s)	327, 468, 505, 620, 879, 886
SaqAI	TTAA	2 cut(s)	24, 449
SatI	GCNGC	5 cut(s)	98, 153, 348, 863, 1121
Sau3AI	GATC	3 cut(s)	4, 188, 374
Sau96I	GGNCC	1 cut(s)	847
ScaI	AGTACT	1 cut(s)	469
ScrFI	CCNGG	4 cut(s)	126, 260, 617, 845
SfaNI	GCATC	2 cut(s)	98, 621
SfcI	CTRYAG	1 cut(s)	348
SinI	GGWCC	1 cut(s)	847
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	4 cut(s)	41, 574, 588, 982
SseBI	AGGCCT	1 cut(s)	145
SsiI	CCGC	4 cut(s)	205, 362, 637, 1121
SspMI	CTAG	1 cut(s)	210
StuI	AGGCCT	1 cut(s)	145
StyD4I	CCNGG	4 cut(s)	124, 258, 615, 843
TaaI	ACNGT	1 cut(s)	458
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	5 cut(s)	20, 106, 373, 568, 1043
TasI	AATT	4 cut(s)	41, 574, 588, 982
TatI	WGTACW	3 cut(s)	467, 878, 885
TauI	GCSGC	1 cut(s)	1123
TfiI	GAWTC	5 cut(s)	88, 565, 840, 962, 1004
Tru1I	TTAA	2 cut(s)	24, 449
Tru9I	TTAA	2 cut(s)	24, 449
TscAI	CASTG	2 cut(s)	188, 336
TseI	GCWGC	4 cut(s)	97, 152, 347, 862
TspDTI	ATGAA	3 cut(s)	87, 655, 825
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	2 cut(s)	188, 336
Van91I	CCANNNNNTGG	1 cut(s)	602
VpaK11BI	GGWCC	1 cut(s)	847
XapI	RAATTY	1 cut(s)	588
XcmI	CCANNNNNNNNNTGG	1 cut(s)	841
XmiI	GTMKAC	1 cut(s)	856
XspI	CTAG	1 cut(s)	210
ZraI	GACGTC	1 cut(s)	371
ZrmI	AGTACT	1 cut(s)	469
Zsp2I	ATGCAT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.