Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0013690

Physical Location & Seq

Genomic Coordinates Reverse (-)

22660402 .. 22661708

Gene Structure 1307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGATGATGATCGATCAGGCCACCCAAGGAAGCATATCACTTGGAGATGATGCAGATGATGAAGAATCTGATTCAAAAAGAAGAAAGAAGGAGAGCTGCATGATTGAAACAAATTTTGCATCCAGGGATGTCCACAAACCAAGAGTAGTTGTCCAAATTGAGAGCGAAATTGACATACTTGATGATGGCTATCGCTGGCGGAAGTATGGGCAAAAAGTTGTCAAAGGAAATCCAAACCCCAGGAGCTATTACAAGTGCACAAGTGCGGGATGTTCAGTAAGGAAGCACGTGGAAAGGGCCTCCCACGATCTGAAATTCGTAATTACAACGTACGAGGGAAAACACAACCACGAAGTGCCTGCAGCGAGAAACAGTAATCACATGAATTCAAGTAGCGGTAATGGACTCCCATCTACTGCCAATGCTCAGCCAGTTCTGGCATTACCTAGAAATACCAATATTCCAAAGCCTGAGACACAATTACAAGATCTTGCACCTCATTTTGATAGAAAAGCGGAATTCCATGACAAATACATGAGGCCTAGTTTTCTCGGGAATTTCAGTAATGACATGAAATTTGGAGCTTCCTCCCCTTACCAAATGAAATATCCTCCTCTGCAGAATACCATGCTGTATGCCTCATTCGGAATGTATGCTAATCACAATGTGGCTCATCAGGCTGGTTCTGTTGTCCCAGACTTCCCAATTTCACTGCCTATGAACCTTCCGCCATCTGGTAACCTCCCTCTCGCCAGTTATGATTTCAACAACGGAAAATCAGTTTGTCCAGAACAGCCTTATTTTTCCGGACAGCAGCTGCAGGAGATCGATGTAAGATTCCTACAGCCTAAACAAGAGCAGAAGGATGATAACCTTTACGATGCCTGCTTCCCAACAATGGATCAGTCAAGTGCAGCATTATCGTCGTCATCGCTATTCTATCACAGGGTCATGGGAGGTTATCCGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007163 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009889 GO:0009942 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

324

Amino Acids

36.26

Weight (kDa)

6.59

Isoelectric Point (pI)

59.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00500
malus_domestica	MD04G1244700.v1.1 MD12G1260600.v1.1
prunus_persica	Prupe.6G361300_v2.0.a1
pyrus_communis	pycom04g21550 pycom12g23860
rosa_chinensis	RchiOBHm_Chr3g0447881
rosa_laevigata	RLG00000025964
rosa_multiflora	Rmu_sc0005969.1_g000001 Rmu_sc0020869.1_g000002 Rmu_sc0033808.1_g000003
rosa_roxburghii	Rroxscaffold_6G00426080
rosa_rugosa	Rorug02G0606800
rosa_samantha	Rh3AG006000 Rh3BG005700 Rh3CG005900 Rh3DG006200
rosa_wichuraiana	Rw3G000460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	806
AciI	CCGC	5 cut(s)	199, 266, 396, 515, 728
AclWI	GGATC	1 cut(s)	909
AcsI	RAATTY	6 cut(s)	112, 314, 385, 518, 556, 575
AcvI	CACGTG	1 cut(s)	289
AdeI	CACNNNGTG	2 cut(s)	355, 667
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	734, 898
AgsI	TTSAA	4 cut(s)	75, 107, 390, 766
AjnI	CCWGG	2 cut(s)	122, 239
AluBI	AGCT	4 cut(s)	96, 246, 584, 817
AluI	AGCT	4 cut(s)	96, 246, 584, 817
Alw21I	GWGCWC	1 cut(s)	260
Alw26I	GTCTC	1 cut(s)	467
Alw44I	GTGCAC	1 cut(s)	256
AlwI	GGATC	1 cut(s)	909
AlwNI	CAGNNNCTG	1 cut(s)	817
Ama87I	CYCGRG	1 cut(s)	551
Aor13HI	TCCGGA	1 cut(s)	806
AoxI	GGCC	3 cut(s)	18, 297, 539
ApaLI	GTGCAC	1 cut(s)	256
ApeKI	GCWGC	5 cut(s)	96, 362, 814, 817, 914
ApoI	RAATTY	6 cut(s)	112, 314, 385, 518, 556, 575
ArsI	GACNNNNNNTTYG	2 cut(s)	560, 592
AspS9I	GGNCC	1 cut(s)	297
AvaI	CYCGRG	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	260
BbrPI	CACGTG	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	5 cut(s)	83, 374, 804, 826, 926
BccI	CCATC	3 cut(s)	179, 418, 739
BcgI	CGANNNNNNTGC	6 cut(s)	341, 375, 903, 906, 937, 940
BciT130I	CCWGG	2 cut(s)	124, 241
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	2 cut(s)	447, 543
BfmI	CTRYAG	4 cut(s)	360, 617, 818, 842
BglII	AGATCT	1 cut(s)	487
BisI	GCNGC	5 cut(s)	97, 363, 815, 818, 915
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	5 cut(s)	98, 364, 816, 819, 916
Bme1390I	CCNGG	2 cut(s)	124, 241
BmeT110I	CYCGRG	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	297
BmrFI	CCNGG	2 cut(s)	124, 241
BmsI	GCATC	3 cut(s)	40, 128, 871
Bpu1102I	GCTNAGC	1 cut(s)	426
Bsa29I	ATCGAT	2 cut(s)	12, 828
BsaAI	YACGTR	1 cut(s)	289
BsaBI	GATNNNNATC	2 cut(s)	8, 189
BsaJI	CCNNGG	3 cut(s)	25, 123, 239
BsaWI	WCCGGW	1 cut(s)	806
Bsc4I	CCNNNNNNNGG	2 cut(s)	734, 898
Bse1I	ACTGG	2 cut(s)	431, 753
Bse8I	GATNNNNATC	2 cut(s)	8, 189
BseAI	TCCGGA	1 cut(s)	806
BseBI	CCWGG	2 cut(s)	124, 241
BseCI	ATCGAT	2 cut(s)	12, 828
BseDI	CCNNGG	3 cut(s)	25, 123, 239
BseGI	GGATG	4 cut(s)	119, 133, 275, 871
BseJI	GATNNNNATC	2 cut(s)	8, 189
BseLI	CCNNNNNNNGG	2 cut(s)	734, 898
BseMII	CTCAG	2 cut(s)	440, 462
BseNI	ACTGG	2 cut(s)	431, 753
BseRI	GAGGAG	1 cut(s)	603
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	5 cut(s)	83, 374, 804, 826, 926
BsgI	GTGCAG	1 cut(s)	933
BshFI	GGCC	3 cut(s)	20, 299, 541
BshVI	ATCGAT	2 cut(s)	12, 828
BsiHKAI	GWGCWC	1 cut(s)	260
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	807
BsiWI	CGTACG	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	2 cut(s)	734, 898
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	677
BsnI	GGCC	3 cut(s)	20, 299, 541
BsoBI	CYCGRG	1 cut(s)	551
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp13I	TCCGGA	1 cut(s)	806
Bsp143I	GATC	6 cut(s)	9, 13, 307, 487, 825, 901
Bsp1720I	GCTNAGC	1 cut(s)	426
BspACI	CCGC	5 cut(s)	199, 266, 396, 515, 728
BspANI	GGCC	3 cut(s)	20, 299, 541
BspCNI	CTCAG	2 cut(s)	439, 463
BspDI	ATCGAT	2 cut(s)	12, 828
BspEI	TCCGGA	1 cut(s)	806
BspMAI	CTGCAG	3 cut(s)	364, 621, 822
BspPI	GGATC	1 cut(s)	909
BsrI	ACTGG	2 cut(s)	431, 753
BssECI	CCNNGG	3 cut(s)	25, 123, 239
BssMI	GATC	6 cut(s)	9, 13, 307, 487, 825, 901
BssT1I	CCWWGG	1 cut(s)	25
Bst2UI	CCWGG	2 cut(s)	124, 241
Bst4CI	ACNGT	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	289
BstC8I	GCNNGC	3 cut(s)	197, 360, 886
BstDEI	CTNAG	2 cut(s)	426, 471
BstEII	GGTNACC	1 cut(s)	737
BstF5I	GGATG	4 cut(s)	119, 133, 275, 871
BstKTI	GATC	6 cut(s)	12, 16, 310, 490, 828, 904
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	6 cut(s)	9, 13, 307, 487, 825, 901
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BstNI	CCWGG	2 cut(s)	124, 241
BstPI	GGTNACC	1 cut(s)	737
BstSCI	CCNGG	2 cut(s)	122, 239
BstSFI	CTRYAG	4 cut(s)	360, 617, 818, 842
BstSLI	GKGCMC	1 cut(s)	260
BstV1I	GCAGC	5 cut(s)	83, 374, 804, 826, 926
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
Bsu15I	ATCGAT	2 cut(s)	12, 828
BsuRI	GGCC	3 cut(s)	20, 299, 541
BsuTUI	ATCGAT	2 cut(s)	12, 828
BtgZI	GCGATG	1 cut(s)	915
BtsCI	GGATG	4 cut(s)	119, 133, 275, 871
BtsI	GCAGTG	1 cut(s)	710
BtsIMutI	CAGTG	1 cut(s)	710
Cac8I	GCNNGC	3 cut(s)	197, 360, 886
CaiI	CAGNNNCTG	1 cut(s)	817
Cfr13I	GGNCC	1 cut(s)	297
ClaI	ATCGAT	2 cut(s)	12, 828
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	7 cut(s)	100, 382, 524, 535, 571, 628, 952
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	2 cut(s)	426, 471
DpnI	GATC	6 cut(s)	11, 15, 309, 489, 827, 903
DpnII	GATC	6 cut(s)	9, 13, 307, 487, 825, 901
DraIII	CACNNNGTG	2 cut(s)	355, 667
EciI	GGCGGA	2 cut(s)	214, 717
Eco130I	CCWWGG	1 cut(s)	25
Eco147I	AGGCCT	1 cut(s)	541
Eco72I	CACGTG	1 cut(s)	289
Eco88I	CYCGRG	1 cut(s)	551
Eco91I	GGTNACC	1 cut(s)	737
EcoO109I	RGGNCCY	1 cut(s)	297
EcoO65I	GGTNACC	1 cut(s)	737
EcoRI	GAATTC	2 cut(s)	385, 518
EcoRII	CCWGG	2 cut(s)	122, 239
EcoT14I	CCWWGG	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	7 cut(s)	103, 385, 527, 538, 574, 631, 955
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	7 cut(s)	99, 381, 523, 534, 570, 627, 951
FauI	CCCGC	1 cut(s)	259
Fnu4HI	GCNGC	5 cut(s)	97, 363, 815, 818, 915
FokI	GGATG	4 cut(s)	106, 140, 282, 878
Fsp4HI	GCNGC	5 cut(s)	97, 363, 815, 818, 915
FspBI	CTAG	2 cut(s)	447, 543
GluI	GCNGC	5 cut(s)	97, 363, 815, 818, 915
HaeIII	GGCC	3 cut(s)	20, 299, 541
HapII	CCGG	1 cut(s)	807
Hin1II	CATG	7 cut(s)	103, 385, 527, 538, 574, 631, 955
HinfI	GANTC	4 cut(s)	65, 71, 405, 837
HpaII	CCGG	1 cut(s)	807
Hpy166II	GTNNAC	2 cut(s)	133, 258
Hpy188I	TCNGA	3 cut(s)	70, 312, 647
Hpy188III	TCNNGA	3 cut(s)	553, 788, 807
Hpy8I	GTNNAC	2 cut(s)	133, 258
Hpy99I	CGWCG	1 cut(s)	928
HpyAV	CCTTC	3 cut(s)	82, 734, 856
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	2 cut(s)	288, 329
HpyCH4V	TGCA	9 cut(s)	53, 99, 119, 258, 362, 494, 619, 820, 914
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
HpyF3I	CTNAG	2 cut(s)	426, 471
HpySE526I	ACGT	2 cut(s)	288, 329
Hsp92II	CATG	7 cut(s)	103, 385, 527, 538, 574, 631, 955
Kpn2I	TCCGGA	1 cut(s)	806
Kzo9I	GATC	6 cut(s)	9, 13, 307, 487, 825, 901
LmnI	GCTCC	2 cut(s)	243, 581
Lsp1109I	GCAGC	5 cut(s)	83, 374, 804, 826, 926
LweI	GCATC	3 cut(s)	40, 128, 871
MaeI	CTAG	2 cut(s)	447, 543
MaeII	ACGT	2 cut(s)	288, 329
MaeIII	GTNAC	1 cut(s)	737
MalI	GATC	6 cut(s)	11, 15, 309, 489, 827, 903
MboI	GATC	6 cut(s)	9, 13, 307, 487, 825, 901
MboII	GAAGA	2 cut(s)	74, 93
MflI	RGATCY	1 cut(s)	487
MhlI	GDGCHC	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	399
MroI	TCCGGA	1 cut(s)	806
MspA1I	CMGCKG	1 cut(s)	817
MspI	CCGG	1 cut(s)	807
MspR9I	CCNGG	2 cut(s)	124, 241
MvaI	CCWGG	2 cut(s)	124, 241
MwoI	GCNNNNNNNGC	1 cut(s)	677
NdeII	GATC	6 cut(s)	9, 13, 307, 487, 825, 901
NlaIII	CATG	7 cut(s)	103, 385, 527, 538, 574, 631, 955
PceI	AGGCCT	1 cut(s)	541
PfeI	GAWTC	3 cut(s)	65, 71, 837
Pfl23II	CGTACG	1 cut(s)	330
PkrI	GCNGC	5 cut(s)	98, 364, 816, 819, 916
PleI	GAGTC	1 cut(s)	399
PmaCI	CACGTG	1 cut(s)	289
PmlI	CACGTG	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	399
Ppu21I	YACGTR	1 cut(s)	289
Psp6I	CCWGG	2 cut(s)	122, 239
PspCI	CACGTG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	737
PspGI	CCWGG	2 cut(s)	122, 239
PspLI	CGTACG	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	297
PstI	CTGCAG	3 cut(s)	364, 621, 822
PstNI	CAGNNNCTG	1 cut(s)	817
PsuI	RGATCY	1 cut(s)	487
PvuII	CAGCTG	1 cut(s)	817
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SatI	GCNGC	5 cut(s)	97, 363, 815, 818, 915
Sau3AI	GATC	6 cut(s)	9, 13, 307, 487, 825, 901
Sau96I	GGNCC	1 cut(s)	297
SchI	GAGTC	1 cut(s)	399
ScrFI	CCNGG	2 cut(s)	124, 241
SduI	GDGCHC	1 cut(s)	260
SfaNI	GCATC	3 cut(s)	40, 128, 871
SfcI	CTRYAG	4 cut(s)	360, 617, 818, 842
SseBI	AGGCCT	1 cut(s)	541
SsiI	CCGC	5 cut(s)	199, 266, 396, 515, 728
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	2 cut(s)	447, 543
StuI	AGGCCT	1 cut(s)	541
StyD4I	CCNGG	2 cut(s)	122, 239
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	2 cut(s)	291, 332
TaqI	TCGA	2 cut(s)	12, 828
TfiI	GAWTC	3 cut(s)	65, 71, 837
TscAI	CASTG	1 cut(s)	717
TseI	GCWGC	5 cut(s)	96, 362, 814, 817, 914
TspDTI	ATGAA	5 cut(s)	75, 398, 587, 617, 734
TspGWI	ACGGA	2 cut(s)	786, 954
TspRI	CASTG	1 cut(s)	717
VneI	GTGCAC	1 cut(s)	256
XapI	RAATTY	6 cut(s)	112, 314, 385, 518, 556, 575
XspI	CTAG	2 cut(s)	447, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.