Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0013690

Physical Location & Seq

Genomic Coordinates Forward (+)

421713 .. 425714

Gene Structure 4002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG005900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2208 bp

ATGGGATTTTTAAGGACAATGGAGCAAGCAAACGATGTGGTCGTTGCAGAGAACAAAGCCAAATATGGAGGTGGCGGCGGTACCGTTAGCATAGCCGAGAGGAGGGCAGCCAAGTGTGGATTCAATGCGGAGAGGATCAATACGGCGCGTTTCAGGAGGACCAACACCAGCCCTCTGCCTTCGCCGGTGGAGAGGTCTCCTTGCCACCTCACTATTCCTCCCGGCATCAGTCCCACCGCTTTGCTCGACTCCCCCATGATGCTCCCCAATTCTCAGGCATTGCCATCTCCCACTACCGGAACTTTTCCATTGCTTCCTCCTAGTGATGACAGTTCAATGCTGAAATCTGCAACTAATGAAGATGTTCGTAGGGGGAGTGGTTTTGATTCATCCTTCATGTTGAAGAGTCAAGGAGATCCTAAGTATCTGCCAGGTTATTCTGGTTTTGAAAATCAGGGATCTAATGTTGACTATCAAGCTCTTGTTTTGGAGCAACAGCCAATGGATTTTGATTTCCCGATGGAATTTCCTGAAGAAGTGAATGCAAAGCACTATGTTGTTGATACATCTAATGATGTTAAGAATTTAAATAGTGTGGTAATGAATGAGAGCTGTGTTGACTTGCAAATGCCTCATTCCAGCTTAGCTTCTTTTCCCAAAGAAGTTATTCATGGGGAGGATGTTGGGACCCATCAACTTTTGGAAGGAGACCATAAAGGGTATCCATCTCTGGGAATGGCAAGGAATTCAGAGGATGGATACAATTGGAGGAAGTATGGGCAGAAACAGGTTAAAGGTAGTGAATATCCAAGGAGCTACTATAAGTGCACACATCCAAATTGTCAGGTGAAGAAAAAGGTGGAACGATCCTTTGATGGTCAAATAACAGAAATCATTTACAAGGGAGCTCCTCATAACCATGCACAACCTCAGCCTAATCGACGAGCTGCAGCATCACTTGGATCAGCATTTTCATTTGATGAGATGTCAGAGATGGGTGAGGGCAATAGAACCTCTGTCAAAGTTGACAGTGACTCACTTTGGGCAAAGATTCAGTCTGGTGAGGATATTAAGAGTGGTTATGATGGGAGGCCTGATGGTCTGGAAAGGACTTCCTCAGCATCCGTTGTTACTGATCTTTCTGATCCATTATCGGCTACCCAAGGAAAATCCCCGGGTATCTTTGAATCTGCAGACACTCCGGAGTTTTCATCCACACTTGCTAGTGTTGATGAAGATGACCAGGCCACCCTACGGAGCATATCGCTTGGAGAGGATGCAGATAATGAAGAATCTGACTCAAAAAGAAGAAAGAAAGATAGCTGCATGATTGAAACAAGTATAGCTTCCAGGGCTGTCCGTGAACCAAGAGTGGTTGTCCAAATTGAGAGTGAAATCGACATACTTGATGATGGCTACCGTTGGCGGAAGTATGGACAAAAAGTTGTCAAAGGAAATCCAAACCCCAGGAGCTACTACAAATGTACAAGTGCGGGATGCTTAGTCAGGAAGCATGTGGAAAGGGCCTCCCATGATCTGAAATTCGTAATTACTACATACGAGGGAAAACACAACCATGAAGTGCCTGCAGCCAGAAACAGTAATCATATAAACTCAAGCAGTGCAAATGGACATCCATCTACTCAGTCAGCACTGGCGTTATCCAGAAATACCAACATTCCAAAACCTGAGACACAAGTACAAGATCTTGCGCCTCATTTTGATAGAAAACCAGAATTTCATGACGAATACCTGCGACCTACTTATCTTGGGAATTTCAACAATGACTTGAAATATGGAGCTTCCTCCATCTACCAAATGAAGTTCCCACCTCTTCAGAATGCAATGCCATATGGCTCCTTTGGTCTAAATGCTGCTCATCACAATGTGGCTCACCAGGCTGGTTCTGTTGCATCTATTGTCCCAGACTTCTCCATGTCACTGCCCTTGAATCTTCCCCCATCTGGGAACCTTGGTCTCGCAGGTTTTGATTTCAACAATGGAAAGTCAGTATATCCAGTGCAGCCTTATGTCTCAGGACAGCAGCTCCAGGAGAATGACTTAAGGTACCTGAAGCCAAAACAAGAGCAGAAGGATGATGGCCTTTATGATGCCTGCAGCCTGCCTATCATTGATCAGGGAAATGCATCATTGTCACCATCCTCATCCCTACTCTATCACAGAATGATGGGAAGCTATTCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007163 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009889 GO:0009942 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

735

Amino Acids

80.84

Weight (kDa)

5.87

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	251 - 307	1.7e-24	WRKY DNA -binding domain
WRKY	PF03106	470 - 527	1.1e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00500
malus_domestica	MD04G1244700.v1.1 MD12G1260600.v1.1
prunus_persica	Prupe.6G361300_v2.0.a1
pyrus_communis	pycom04g21550 pycom12g23860
rosa_chinensis	RchiOBHm_Chr3g0447881
rosa_laevigata	RLG00000025964
rosa_multiflora	Rmu_sc0005969.1_g000001 Rmu_sc0020869.1_g000002 Rmu_sc0033808.1_g000003
rosa_roxburghii	Rroxscaffold_6G00426080
rosa_rugosa	Rorug02G0606800
rosa_samantha	Rh3AG006000 Rh3BG005700 Rh3CG005900 Rh3DG006200
rosa_wichuraiana	Rw3G000460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1761, 1973
Acc65I	GGTACC	2 cut(s)	80, 2067
AccB1I	GGYRCC	2 cut(s)	80, 2067
AccII	CGCG	1 cut(s)	148
AccIII	TCCGGA	1 cut(s)	1201
AciI	CCGC	6 cut(s)	75, 78, 128, 237, 1426, 1493
AclWI	GGATC	6 cut(s)	143, 410, 466, 861, 970, 1139
AcsI	RAATTY	6 cut(s)	524, 583, 745, 1541, 1736, 1774
AcuI	CTGAAG	3 cut(s)	552, 1820, 2093
AdeI	CACNNNGTG	1 cut(s)	1888
AfaI	GTAC	4 cut(s)	82, 1486, 1701, 2069
AfiI	CCNNNNNNNGG	6 cut(s)	102, 296, 731, 1254, 1964, 1965
AflII	CTTAAG	1 cut(s)	2062
AjnI	CCWGG	6 cut(s)	430, 1242, 1349, 1466, 1896, 2049
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
Alw21I	GWGCWC	2 cut(s)	830, 910
Alw26I	GTCTC	5 cut(s)	201, 702, 1685, 1982, 2038
Alw44I	GTGCAC	1 cut(s)	826
AlwI	GGATC	6 cut(s)	143, 410, 466, 861, 970, 1139
Ama87I	CYCGRG	1 cut(s)	1174
Aor13HI	TCCGGA	1 cut(s)	1201
AoxI	GGCC	4 cut(s)	1091, 1245, 1524, 2101
ApaLI	GTGCAC	1 cut(s)	826
ApeKI	GCWGC	9 cut(s)	107, 947, 950, 1323, 1589, 1874, 2023, 2044, 2118
ApoI	RAATTY	6 cut(s)	524, 583, 745, 1541, 1736, 1774
ArsI	GACNNNNNNTTYG	2 cut(s)	1040, 1072
Asp700I	GAANNNNTTC	3 cut(s)	363, 666, 2197
Asp718I	GGTACC	2 cut(s)	80, 2067
AspLEI	GCGC	2 cut(s)	148, 1714
AspS9I	GGNCC	3 cut(s)	159, 687, 1524
AsuC2I	CCSGG	3 cut(s)	222, 1175, 1176
AsuHPI	GGTGA	5 cut(s)	859, 1010, 1073, 1886, 2148
AvaI	CYCGRG	1 cut(s)	1174
AvaII	GGWCC	2 cut(s)	159, 687
BaeGI	GKGCMC	1 cut(s)	830
BanI	GGYRCC	2 cut(s)	80, 2067
BanII	GRGCYC	1 cut(s)	910
Bbv12I	GWGCWC	2 cut(s)	830, 910
BbvCI	CCTCAGC	2 cut(s)	930, 1117
BbvI	GCAGC	9 cut(s)	119, 934, 962, 1310, 1601, 1861, 2035, 2056, 2130
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	6 cut(s)	432, 1244, 1351, 1468, 1898, 2051
BciVI	GTATCC	2 cut(s)	732, 752
BclI	TGATCA	1 cut(s)	2134
BcnI	CCSGG	3 cut(s)	222, 1175, 1176
BcoDI	GTCTC	5 cut(s)	201, 702, 1685, 1982, 2038
BfaI	CTAG	2 cut(s)	321, 1224
BfmI	CTRYAG	4 cut(s)	948, 1191, 1587, 2116
BfrI	CTTAAG	1 cut(s)	2062
BfuAI	ACCTGC	2 cut(s)	1761, 1973
BfuI	GTATCC	2 cut(s)	732, 752
BglII	AGATCT	1 cut(s)	1705
BlpI	GCTNAGC	1 cut(s)	643
Bme1390I	CCNGG	9 cut(s)	222, 432, 1175, 1176, 1244, 1351, 1468, 1898, 2051
Bme18I	GGWCC	2 cut(s)	159, 687
BmeT110I	CYCGRG	1 cut(s)	1174
BmgT120I	GGNCC	3 cut(s)	159, 687, 1524
BmiI	GGNNCC	6 cut(s)	82, 688, 689, 1858, 1970, 2069
BmrFI	CCNGG	9 cut(s)	222, 432, 1175, 1176, 1244, 1351, 1468, 1898, 2051
BmsI	GCATC	9 cut(s)	234, 249, 962, 1130, 1267, 1487, 1922, 2101, 2156
BpmI	CTGGAG	1 cut(s)	2033
Bpu10I	CCTNAGC	2 cut(s)	930, 1117
Bpu1102I	GCTNAGC	1 cut(s)	643
BpuEI	CTTGAG	1 cut(s)	1600
BpuMI	CCSGG	3 cut(s)	222, 1175, 1176
BsaI	GGTCTC	3 cut(s)	201, 702, 1982
BsaJI	CCNNGG	7 cut(s)	809, 1162, 1173, 1174, 1350, 1466, 1972
BsaWI	WCCGGW	2 cut(s)	296, 1201
BsaXI	ACNNNNNCTCC	4 cut(s)	202, 232, 2031, 2061
Bsc4I	CCNNNNNNNGG	6 cut(s)	102, 296, 731, 1254, 1964, 1965
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	2 cut(s)	1659, 2018
Bse3DI	GCAATG	3 cut(s)	278, 308, 1851
BseAI	TCCGGA	1 cut(s)	1201
BseBI	CCWGG	6 cut(s)	432, 1244, 1351, 1468, 1898, 2051
BseDI	CCNNGG	7 cut(s)	809, 1162, 1173, 1174, 1350, 1466, 1972
BseLI	CCNNNNNNNGG	6 cut(s)	102, 296, 731, 1254, 1964, 1965
BseMI	GCAATG	3 cut(s)	278, 308, 1851
BseMII	CTCAG	6 cut(s)	287, 944, 1131, 1658, 1680, 2049
BseNI	ACTGG	2 cut(s)	1659, 2018
BseRI	GAGGAG	2 cut(s)	115, 900
BseSI	GKGCMC	1 cut(s)	830
BseXI	GCAGC	9 cut(s)	119, 934, 962, 1310, 1601, 1861, 2035, 2056, 2130
BsgI	GTGCAG	1 cut(s)	2042
Bsh1236I	CGCG	1 cut(s)	148
BshFI	GGCC	4 cut(s)	1093, 1247, 1526, 2103
BshNI	GGYRCC	2 cut(s)	80, 2067
BsiHKAI	GWGCWC	2 cut(s)	830, 910
BsiHKCI	CYCGRG	1 cut(s)	1174
BsiSI	CCGG	5 cut(s)	185, 222, 297, 1175, 1202
BslFI	GGGAC	3 cut(s)	216, 700, 1907
BslI	CCNNNNNNNGG	6 cut(s)	102, 296, 731, 1254, 1964, 1965
BsmAI	GTCTC	5 cut(s)	201, 702, 1685, 1982, 2038
BsmFI	GGGAC	3 cut(s)	216, 700, 1907
BsmI	GAATGC	2 cut(s)	547, 1846
BsnI	GGCC	4 cut(s)	1093, 1247, 1526, 2103
Bso31I	GGTCTC	3 cut(s)	201, 702, 1982
BsoBI	CYCGRG	1 cut(s)	1174
Bsp1286I	GDGCHC	2 cut(s)	830, 910
Bsp13I	TCCGGA	1 cut(s)	1201
Bsp1407I	TGTACA	1 cut(s)	1484
Bsp1720I	GCTNAGC	1 cut(s)	643
BspACI	CCGC	6 cut(s)	75, 78, 128, 237, 1426, 1493
BspANI	GGCC	4 cut(s)	1093, 1247, 1526, 2103
BspCNI	CTCAG	6 cut(s)	286, 943, 1130, 1657, 1681, 2048
BspEI	TCCGGA	1 cut(s)	1201
BspFNI	CGCG	1 cut(s)	148
BspHI	TCATGA	1 cut(s)	1741
BspLI	GGNNCC	6 cut(s)	82, 688, 689, 1858, 1970, 2069
BspMAI	CTGCAG	4 cut(s)	952, 1195, 1591, 2120
BspMI	ACCTGC	2 cut(s)	1761, 1973
BspPI	GGATC	6 cut(s)	143, 410, 466, 861, 970, 1139
BspT107I	GGYRCC	2 cut(s)	80, 2067
BspTI	CTTAAG	1 cut(s)	2062
BspTNI	GGTCTC	3 cut(s)	201, 702, 1982
BsrDI	GCAATG	3 cut(s)	278, 308, 1851
BsrFI	RCCGGY	1 cut(s)	184
BsrGI	TGTACA	1 cut(s)	1484
BsrI	ACTGG	2 cut(s)	1659, 2018
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	7 cut(s)	809, 1162, 1173, 1174, 1350, 1466, 1972
BssT1I	CCWWGG	3 cut(s)	809, 1162, 1972
Bst2UI	CCWGG	6 cut(s)	432, 1244, 1351, 1468, 1898, 2051
Bst4CI	ACNGT	5 cut(s)	85, 332, 1031, 1421, 1601
Bst6I	CTCTTC	2 cut(s)	398, 1839
BstAFI	CTTAAG	1 cut(s)	2062
BstAUI	TGTACA	1 cut(s)	1484
BstC8I	GCNNGC	4 cut(s)	27, 1587, 2116, 2123
BstDEI	CTNAG	9 cut(s)	273, 420, 643, 930, 1117, 1501, 1644, 1689, 2035
BstFNI	CGCG	1 cut(s)	148
BstHHI	GCGC	2 cut(s)	148, 1714
BstMAI	GTCTC	5 cut(s)	201, 702, 1685, 1982, 2038
BstMWI	GCNNNNNNNGC	2 cut(s)	1352, 1898
BstNI	CCWGG	6 cut(s)	432, 1244, 1351, 1468, 1898, 2051
BstNSI	RCATGY	1 cut(s)	1517
BstSCI	CCNGG	9 cut(s)	220, 430, 1173, 1174, 1242, 1349, 1466, 1896, 2049
BstSFI	CTRYAG	4 cut(s)	948, 1191, 1587, 2116
BstSLI	GKGCMC	1 cut(s)	830
BstUI	CGCG	1 cut(s)	148
BstV1I	GCAGC	9 cut(s)	119, 934, 962, 1310, 1601, 1861, 2035, 2056, 2130
BstX2I	RGATCY	3 cut(s)	415, 458, 1705
BstYI	RGATCY	3 cut(s)	415, 458, 1705
BsuI	GTATCC	2 cut(s)	732, 752
BsuRI	GGCC	4 cut(s)	1093, 1247, 1526, 2103
BtsI	GCAGTG	2 cut(s)	1627, 1940
BtsIMutI	CAGTG	5 cut(s)	1036, 1627, 1652, 1940, 2025
BveI	ACCTGC	2 cut(s)	1761, 1973
Cac8I	GCNNGC	4 cut(s)	27, 1587, 2116, 2123
CciI	TCATGA	1 cut(s)	1741
CfoI	GCGC	2 cut(s)	148, 1714
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	3 cut(s)	159, 687, 1524
Cfr9I	CCCGGG	1 cut(s)	1174
Csp6I	GTAC	4 cut(s)	81, 1485, 1700, 2068
CspCI	CAANNNNNGTGG	2 cut(s)	18, 53
CviQI	GTAC	4 cut(s)	81, 1485, 1700, 2068
DdeI	CTNAG	9 cut(s)	273, 420, 643, 930, 1117, 1501, 1644, 1689, 2035
DraI	TTTAAA	1 cut(s)	588
DraIII	CACNNNGTG	1 cut(s)	1888
Eam1104I	CTCTTC	2 cut(s)	398, 1839
EarI	CTCTTC	2 cut(s)	398, 1839
EciI	GGCGGA	1 cut(s)	1441
Ecl136II	GAGCTC	1 cut(s)	908
Eco130I	CCWWGG	3 cut(s)	809, 1162, 1972
Eco147I	AGGCCT	1 cut(s)	1093
Eco24I	GRGCYC	1 cut(s)	910
Eco31I	GGTCTC	3 cut(s)	201, 702, 1982
Eco47I	GGWCC	2 cut(s)	159, 687
Eco53kI	GAGCTC	1 cut(s)	908
Eco57I	CTGAAG	3 cut(s)	552, 1820, 2093
Eco88I	CYCGRG	1 cut(s)	1174
EcoICRI	GAGCTC	1 cut(s)	908
EcoO109I	RGGNCCY	2 cut(s)	687, 1524
EcoRI	GAATTC	1 cut(s)	745
EcoRII	CCWGG	6 cut(s)	430, 1242, 1349, 1466, 1896, 2049
EcoT14I	CCWWGG	3 cut(s)	809, 1162, 1972
EcoT22I	ATGCAT	1 cut(s)	2149
EcoT38I	GRGCYC	1 cut(s)	910
ErhI	CCWWGG	3 cut(s)	809, 1162, 1972
FalI	AAGNNNNNCTT	2 cut(s)	1330, 1362
FaqI	GGGAC	3 cut(s)	216, 700, 1907
FauI	CCCGC	1 cut(s)	1486
FauNDI	CATATG	1 cut(s)	1852
FbaI	TGATCA	1 cut(s)	2134
FriOI	GRGCYC	1 cut(s)	910
FspBI	CTAG	2 cut(s)	321, 1224
GlaI	GCGC	2 cut(s)	147, 1713
GsuI	CTGGAG	1 cut(s)	2033
HaeIII	GGCC	4 cut(s)	1093, 1247, 1526, 2103
HapII	CCGG	5 cut(s)	185, 222, 297, 1175, 1202
HhaI	GCGC	2 cut(s)	148, 1714
Hin6I	GCGC	2 cut(s)	146, 1712
HinP1I	GCGC	2 cut(s)	146, 1712
HincII	GTYRAC	3 cut(s)	469, 619, 1027
HindII	GTYRAC	3 cut(s)	469, 619, 1027
HpaII	CCGG	5 cut(s)	185, 222, 297, 1175, 1202
HphI	GGTGA	5 cut(s)	859, 1010, 1073, 1886, 2148
Hpy166II	GTNNAC	5 cut(s)	469, 619, 828, 1027, 1364
Hpy188I	TCNGA	6 cut(s)	751, 991, 1144, 1297, 1539, 1839
Hpy188III	TCNNGA	9 cut(s)	154, 517, 530, 1103, 1202, 1507, 1665, 1742, 2037
Hpy8I	GTNNAC	5 cut(s)	469, 619, 828, 1027, 1364
Hpy99I	CGWCG	1 cut(s)	945
HpyAV	CCTTC	4 cut(s)	189, 403, 698, 2086
HpyCH4III	ACNGT	5 cut(s)	85, 332, 1031, 1421, 1601
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1352, 1898
HpyF3I	CTNAG	9 cut(s)	273, 420, 643, 930, 1117, 1501, 1644, 1689, 2035
HspAI	GCGC	2 cut(s)	146, 1712
KflI	GGGWCCC	1 cut(s)	687
Kpn2I	TCCGGA	1 cut(s)	1201
KpnI	GGTACC	2 cut(s)	84, 2071
Ksp22I	TGATCA	1 cut(s)	2134
Lsp1109I	GCAGC	9 cut(s)	119, 934, 962, 1310, 1601, 1861, 2035, 2056, 2130
LweI	GCATC	9 cut(s)	234, 249, 962, 1130, 1267, 1487, 1922, 2101, 2156
MaeI	CTAG	2 cut(s)	321, 1224
MaeIII	GTNAC	4 cut(s)	1031, 1129, 1938, 2154
MboII	GAAGA	9 cut(s)	371, 415, 545, 862, 1247, 1301, 1320, 1826, 1946
MfeI	CAATTG	1 cut(s)	763
MflI	RGATCY	3 cut(s)	415, 458, 1705
MhlI	GDGCHC	2 cut(s)	830, 910
MlyI	GAGTC	4 cut(s)	242, 415, 1028, 1292
Mph1103I	ATGCAT	1 cut(s)	2149
MroI	TCCGGA	1 cut(s)	1201
MroXI	GAANNNNTTC	3 cut(s)	363, 666, 2197
MseI	TTAA	6 cut(s)	11, 579, 587, 792, 1071, 2063
MslI	CAYNNNNRTG	3 cut(s)	918, 1575, 1884
MspCI	CTTAAG	1 cut(s)	2062
MspI	CCGG	5 cut(s)	185, 222, 297, 1175, 1202
MspR9I	CCNGG	9 cut(s)	222, 432, 1175, 1176, 1244, 1351, 1468, 1898, 2051
MunI	CAATTG	1 cut(s)	763
Mva1269I	GAATGC	2 cut(s)	547, 1846
MvaI	CCWGG	6 cut(s)	432, 1244, 1351, 1468, 1898, 2051
MvnI	CGCG	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	1352, 1898
NciI	CCSGG	3 cut(s)	222, 1175, 1176
NdeI	CATATG	1 cut(s)	1852
NlaIV	GGNNCC	6 cut(s)	82, 688, 689, 1858, 1970, 2069
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	3 cut(s)	1031, 1938, 2154
NsiI	ATGCAT	1 cut(s)	2149
NspI	RCATGY	1 cut(s)	1517
PagI	TCATGA	1 cut(s)	1741
PceI	AGGCCT	1 cut(s)	1093
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PctI	GAATGC	2 cut(s)	547, 1846
PdmI	GAANNNNTTC	3 cut(s)	363, 666, 2197
PfeI	GAWTC	6 cut(s)	120, 386, 1051, 1187, 1292, 1951
PfoI	TCCNGGA	1 cut(s)	2049
PleI	GAGTC	4 cut(s)	242, 414, 1028, 1292
PpsI	GAGTC	4 cut(s)	242, 414, 1028, 1292
PpuMI	RGGWCCY	1 cut(s)	687
Psp124BI	GAGCTC	1 cut(s)	910
Psp5II	RGGWCCY	1 cut(s)	687
Psp6I	CCWGG	6 cut(s)	430, 1242, 1349, 1466, 1896, 2049
PspGI	CCWGG	6 cut(s)	430, 1242, 1349, 1466, 1896, 2049
PspN4I	GGNNCC	6 cut(s)	82, 688, 689, 1858, 1970, 2069
PspPI	GGNCC	3 cut(s)	159, 687, 1524
PspPPI	RGGWCCY	1 cut(s)	687
PstI	CTGCAG	4 cut(s)	952, 1195, 1591, 2120
PsuI	RGATCY	3 cut(s)	415, 458, 1705
RsaI	GTAC	4 cut(s)	82, 1486, 1701, 2069
RsaNI	GTAC	4 cut(s)	81, 1485, 1700, 2068
RseI	CAYNNNNRTG	3 cut(s)	918, 1575, 1884
SacI	GAGCTC	1 cut(s)	910
SaqAI	TTAA	6 cut(s)	11, 579, 587, 792, 1071, 2063
Sau96I	GGNCC	3 cut(s)	159, 687, 1524
SchI	GAGTC	4 cut(s)	242, 415, 1028, 1292
ScrFI	CCNGG	9 cut(s)	222, 432, 1175, 1176, 1244, 1351, 1468, 1898, 2051
SduI	GDGCHC	2 cut(s)	830, 910
SfaNI	GCATC	9 cut(s)	234, 249, 962, 1130, 1267, 1487, 1922, 2101, 2156
SfcI	CTRYAG	4 cut(s)	948, 1191, 1587, 2116
SgrAI	CRCCGGYG	1 cut(s)	184
SinI	GGWCC	2 cut(s)	159, 687
SmaI	CCCGGG	1 cut(s)	1176
SmiI	ATTTAAAT	1 cut(s)	588
SmiMI	CAYNNNNRTG	3 cut(s)	918, 1575, 1884
SmlI	CTYRAG	2 cut(s)	1615, 2062
SmoI	CTYRAG	2 cut(s)	1615, 2062
SseBI	AGGCCT	1 cut(s)	1093
SsiI	CCGC	6 cut(s)	75, 78, 128, 237, 1426, 1493
SspMI	CTAG	2 cut(s)	321, 1224
SstI	GAGCTC	1 cut(s)	910
StuI	AGGCCT	1 cut(s)	1093
StyD4I	CCNGG	9 cut(s)	220, 430, 1173, 1174, 1242, 1349, 1466, 1896, 2049
StyI	CCWWGG	3 cut(s)	809, 1162, 1972
SwaI	ATTTAAAT	1 cut(s)	588
TaaI	ACNGT	5 cut(s)	85, 332, 1031, 1421, 1601
TaqI	TCGA	3 cut(s)	246, 940, 1398
TatI	WGTACW	2 cut(s)	1484, 1699
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	6 cut(s)	120, 386, 1051, 1187, 1292, 1951
Tru1I	TTAA	6 cut(s)	11, 579, 587, 792, 1071, 2063
Tru9I	TTAA	6 cut(s)	11, 579, 587, 792, 1071, 2063
TscAI	CASTG	5 cut(s)	1036, 1627, 1659, 1947, 2025
TseFI	GTSAC	3 cut(s)	1031, 1938, 2154
TseI	GCWGC	9 cut(s)	107, 947, 950, 1323, 1589, 1874, 2023, 2044, 2118
Tsp45I	GTSAC	3 cut(s)	1031, 1938, 2154
TspGWI	ACGGA	3 cut(s)	1114, 1270, 1349
TspMI	CCCGGG	1 cut(s)	1174
TspRI	CASTG	5 cut(s)	1036, 1627, 1659, 1947, 2025
Vha464I	CTTAAG	1 cut(s)	2062
VneI	GTGCAC	1 cut(s)	826
VpaK11BI	GGWCC	2 cut(s)	159, 687
XapI	RAATTY	6 cut(s)	524, 583, 745, 1541, 1736, 1774
XceI	RCATGY	1 cut(s)	1517
XmaI	CCCGGG	1 cut(s)	1174
XmnI	GAANNNNTTC	3 cut(s)	363, 666, 2197
XspI	CTAG	2 cut(s)	321, 1224
Zsp2I	ATGCAT	1 cut(s)	2149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.