Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0013690

Physical Location & Seq

Genomic Coordinates Forward (+)

421268 .. 427107

Gene Structure 5840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG005700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1872 bp

ATGCTGAAATCTGCAACTAATGAAGATGTTCGTAGGGGGAGTGGTTTTGATTCATCCTTCATGTTGAAGAGTCAAGGAGATCCTAAGTATCTGCCAGGTTATTCTGGTTTTGAAAATCAGGGATCTAATGTTGACTATCAAGCTCTTGTTTTGGAGCAACAGCCAATGGATTTTGATTTCCCGATGGAATTTCCTGAAGAAGTGAATGCAAAGCACTATGTTGTTGATACATCTAATGATGTTAAGAATTTAAATAGTGTGGTAATGAATGAGAGCTGTGTTGACTTGCAAATGCCTCATTCCAGCTTAGCTTCTTTTCCCAAAGAAGTTATTCATGGGGAGGATGTTGGGACCCATCAACTTTTGGAAGGAGACCATAAAGGGTATCCATCTCTGGGAATGGCAAGGAATTCAGAGGATGGATACAATTGGAGGAAGTATGGGCAGAAACAGGTTAAAGGTAGTGAATATCCAAGGAGCTACTATAAGTGCACACATCCAAATTGTCAGGTGAAGAAAAAGGTGGAACGATCCTTTGATGGTCAAATAACAGAAATCATTTACAAGGGAGCTCCTCATAACCATGCACAACCTCAGCCTAATCGACGAGCTGCAGCATCACTTGGATCAGCATTTTCATTTGATGAGATGTCAGAGATGGGTGAGGGCAATAGAACCTCTGTCAAAGTTGACAGTGACTCACTTTGGGCAAAGATTCAGTCTGGTGAGGATATTAAGAGTGGTTATGATGGGAGGCCTGATGGTCTGGAAAGGACTTCCTCAGCATCCGTTGTTACTGATCTTTCTGATCCATTATCGGCTACCCAAGGAAAATCCCCGGGTATCTTTGAATCTGCAGACACTCCGGAGTTTTCATCCACACTTGCTAGTGTTGATGAAGATGACCAGGCCACCCTACGGAGCATATCGCTTGGAGAGGATGCAGATAATGAAGAATCTGACTCAAAAAGAAGAAAGAAAGATAGCTGCATGATTGAAACAAGTATAGCTTCCAGGGCTGTCCGTGAACCAAGAGTGGTTGTCCAAATTGAGAGTGAAATCGACATACTTGATGATGGCTACCGTTGGCGGAAGTATGGACAAAAAGTTGTCAAAGGAAATCCAAACCCCAGGAGCTACTACAAATGTACAAGTGCGGGATGCTTAGTCAGGAAGCATGTGGAAAGGGCCTCCCATGATCTGAAATTCGTAATTACTACATACGAGGGAAAACACAACCATGAAGTGCCTGCAGCCAGAAACAGTAATCATATAAACTCAAGCAGTGCAAATGGACATCCATCTACTCAGTCAGCACTGGCGTTATCCAGAAATACCAACATTCCAAAACCTGAGACACAAGTACAAGATCTTGCGCCTCATTTTGATAGAAAACCAGAATTTCATGACGAATACCTGCGACCTACTTATCTTGGGAATTTCAACAATGACTTGAAATATGGAGCTTCCTCCATCTACCAAATGAAGTTCCCACCTCTTCAGAATGCAATGCCATATGGCTCCTTTGGTCTAAATGCTGCTCATCACAATGTGGCTCACCAGGCTGGTTCTGTTGCATCTATTGTCCCAGACTTCTCCATGTCACTGCCCTTGAATCTTCCCCCATCTGGGAACCTTGGTCTCGCAGGTTTTGATTTCAACAATGGAAAGTCAGTATATCCAGTGCAGCCTTATGTCTCAGGACAGCAGCTCCAGGAGAATGACTTAAGGTACCTGAAGCCAAAACAAGAGCAGAAGGATGATGGCCTTTATGATGCCTGCAGCCTGCCTATCATTGATCAGGGAAATGCATCATTGTCACCATCCTCATCCCTACTCTATCACAGAATGATGGGAAGCTATTCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007163 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009889 GO:0009942 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

623

Amino Acids

69.02

Weight (kDa)

5.7

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	139 - 195	1.3e-24	WRKY DNA -binding domain
WRKY	PF03106	358 - 415	8.7e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00500
malus_domestica	MD04G1244700.v1.1 MD12G1260600.v1.1
prunus_persica	Prupe.6G361300_v2.0.a1
pyrus_communis	pycom04g21550 pycom12g23860
rosa_chinensis	RchiOBHm_Chr3g0447881
rosa_laevigata	RLG00000025964
rosa_multiflora	Rmu_sc0005969.1_g000001 Rmu_sc0020869.1_g000002 Rmu_sc0033808.1_g000003
rosa_roxburghii	Rroxscaffold_6G00426080
rosa_rugosa	Rorug02G0606800
rosa_samantha	Rh3AG006000 Rh3BG005700 Rh3CG005900 Rh3DG006200
rosa_wichuraiana	Rw3G000460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1425, 1637
Acc65I	GGTACC	1 cut(s)	1731
AccB1I	GGYRCC	1 cut(s)	1731
AccIII	TCCGGA	1 cut(s)	865
AciI	CCGC	2 cut(s)	1090, 1157
AclWI	GGATC	5 cut(s)	74, 130, 525, 634, 803
AcsI	RAATTY	6 cut(s)	188, 247, 409, 1205, 1400, 1438
AcuI	CTGAAG	3 cut(s)	216, 1484, 1757
AdeI	CACNNNGTG	1 cut(s)	1552
AfaI	GTAC	3 cut(s)	1150, 1365, 1733
AfiI	CCNNNNNNNGG	4 cut(s)	395, 918, 1628, 1629
AflII	CTTAAG	1 cut(s)	1726
AgsI	TTSAA	8 cut(s)	67, 113, 851, 998, 1444, 1456, 1615, 1660
AjnI	CCWGG	6 cut(s)	94, 906, 1013, 1130, 1560, 1713
Alw21I	GWGCWC	2 cut(s)	494, 574
Alw26I	GTCTC	4 cut(s)	366, 1349, 1646, 1702
Alw44I	GTGCAC	1 cut(s)	490
AlwI	GGATC	5 cut(s)	74, 130, 525, 634, 803
Ama87I	CYCGRG	1 cut(s)	838
Aor13HI	TCCGGA	1 cut(s)	865
AoxI	GGCC	4 cut(s)	755, 909, 1188, 1765
ApaLI	GTGCAC	1 cut(s)	490
ApeKI	GCWGC	8 cut(s)	611, 614, 987, 1253, 1538, 1687, 1708, 1782
ApoI	RAATTY	6 cut(s)	188, 247, 409, 1205, 1400, 1438
ArsI	GACNNNNNNTTYG	2 cut(s)	704, 736
Asp700I	GAANNNNTTC	3 cut(s)	27, 330, 1861
Asp718I	GGTACC	1 cut(s)	1731
AspLEI	GCGC	1 cut(s)	1378
AspS9I	GGNCC	2 cut(s)	351, 1188
AsuC2I	CCSGG	2 cut(s)	839, 840
AsuHPI	GGTGA	5 cut(s)	523, 674, 737, 1550, 1812
AvaI	CYCGRG	1 cut(s)	838
AvaII	GGWCC	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	1731
BanII	GRGCYC	1 cut(s)	574
Bbv12I	GWGCWC	2 cut(s)	494, 574
BbvCI	CCTCAGC	2 cut(s)	594, 781
BbvI	GCAGC	8 cut(s)	598, 626, 974, 1265, 1525, 1699, 1720, 1794
BciT130I	CCWGG	6 cut(s)	96, 908, 1015, 1132, 1562, 1715
BciVI	GTATCC	2 cut(s)	396, 416
BclI	TGATCA	1 cut(s)	1798
BcnI	CCSGG	2 cut(s)	839, 840
BcoDI	GTCTC	4 cut(s)	366, 1349, 1646, 1702
BfaI	CTAG	1 cut(s)	888
BfmI	CTRYAG	4 cut(s)	612, 855, 1251, 1780
BfrI	CTTAAG	1 cut(s)	1726
BfuAI	ACCTGC	2 cut(s)	1425, 1637
BfuI	GTATCC	2 cut(s)	396, 416
BglII	AGATCT	1 cut(s)	1369
BisI	GCNGC	8 cut(s)	612, 615, 988, 1254, 1539, 1688, 1709, 1783
BlpI	GCTNAGC	1 cut(s)	307
BlsI	GCNGC	8 cut(s)	613, 616, 989, 1255, 1540, 1689, 1710, 1784
Bme1390I	CCNGG	8 cut(s)	96, 839, 840, 908, 1015, 1132, 1562, 1715
Bme18I	GGWCC	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	838
BmgT120I	GGNCC	2 cut(s)	351, 1188
BmiI	GGNNCC	5 cut(s)	352, 353, 1522, 1634, 1733
BmrFI	CCNGG	8 cut(s)	96, 839, 840, 908, 1015, 1132, 1562, 1715
BmsI	GCATC	7 cut(s)	626, 794, 931, 1151, 1586, 1765, 1820
BpmI	CTGGAG	1 cut(s)	1697
Bpu10I	CCTNAGC	2 cut(s)	594, 781
Bpu1102I	GCTNAGC	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	1264
BpuMI	CCSGG	2 cut(s)	839, 840
BsaI	GGTCTC	2 cut(s)	366, 1646
BsaJI	CCNNGG	7 cut(s)	473, 826, 837, 838, 1014, 1130, 1636
BsaWI	WCCGGW	1 cut(s)	865
BsaXI	ACNNNNNCTCC	2 cut(s)	1695, 1725
Bsc4I	CCNNNNNNNGG	4 cut(s)	395, 918, 1628, 1629
Bse1I	ACTGG	2 cut(s)	1323, 1682
Bse3DI	GCAATG	1 cut(s)	1515
BseAI	TCCGGA	1 cut(s)	865
BseBI	CCWGG	6 cut(s)	96, 908, 1015, 1132, 1562, 1715
BseDI	CCNNGG	7 cut(s)	473, 826, 837, 838, 1014, 1130, 1636
BseLI	CCNNNNNNNGG	4 cut(s)	395, 918, 1628, 1629
BseMI	GCAATG	1 cut(s)	1515
BseMII	CTCAG	5 cut(s)	608, 795, 1322, 1344, 1713
BseNI	ACTGG	2 cut(s)	1323, 1682
BseRI	GAGGAG	1 cut(s)	564
BseSI	GKGCMC	1 cut(s)	494
BseXI	GCAGC	8 cut(s)	598, 626, 974, 1265, 1525, 1699, 1720, 1794
BsgI	GTGCAG	1 cut(s)	1706
BshFI	GGCC	4 cut(s)	757, 911, 1190, 1767
BshNI	GGYRCC	1 cut(s)	1731
BsiHKAI	GWGCWC	2 cut(s)	494, 574
BsiHKCI	CYCGRG	1 cut(s)	838
BsiSI	CCGG	2 cut(s)	839, 866
BslFI	GGGAC	2 cut(s)	364, 1571
BslI	CCNNNNNNNGG	4 cut(s)	395, 918, 1628, 1629
BsmAI	GTCTC	4 cut(s)	366, 1349, 1646, 1702
BsmFI	GGGAC	2 cut(s)	364, 1571
BsmI	GAATGC	2 cut(s)	211, 1510
BsnI	GGCC	4 cut(s)	757, 911, 1190, 1767
Bso31I	GGTCTC	2 cut(s)	366, 1646
BsoBI	CYCGRG	1 cut(s)	838
Bsp1286I	GDGCHC	2 cut(s)	494, 574
Bsp13I	TCCGGA	1 cut(s)	865
Bsp1407I	TGTACA	1 cut(s)	1148
Bsp143I	GATC	9 cut(s)	79, 122, 530, 626, 799, 808, 1198, 1369, 1798
Bsp1720I	GCTNAGC	1 cut(s)	307
BspACI	CCGC	2 cut(s)	1090, 1157
BspANI	GGCC	4 cut(s)	757, 911, 1190, 1767
BspCNI	CTCAG	5 cut(s)	607, 794, 1321, 1345, 1712
BspEI	TCCGGA	1 cut(s)	865
BspHI	TCATGA	1 cut(s)	1405
BspLI	GGNNCC	5 cut(s)	352, 353, 1522, 1634, 1733
BspMAI	CTGCAG	4 cut(s)	616, 859, 1255, 1784
BspMI	ACCTGC	2 cut(s)	1425, 1637
BspPI	GGATC	5 cut(s)	74, 130, 525, 634, 803
BspT107I	GGYRCC	1 cut(s)	1731
BspTI	CTTAAG	1 cut(s)	1726
BspTNI	GGTCTC	2 cut(s)	366, 1646
BsrDI	GCAATG	1 cut(s)	1515
BsrGI	TGTACA	1 cut(s)	1148
BsrI	ACTGG	2 cut(s)	1323, 1682
BssECI	CCNNGG	7 cut(s)	473, 826, 837, 838, 1014, 1130, 1636
BssMI	GATC	9 cut(s)	79, 122, 530, 626, 799, 808, 1198, 1369, 1798
BssT1I	CCWWGG	3 cut(s)	473, 826, 1636
Bst2UI	CCWGG	6 cut(s)	96, 908, 1015, 1132, 1562, 1715
Bst4CI	ACNGT	3 cut(s)	695, 1085, 1265
Bst6I	CTCTTC	2 cut(s)	62, 1503
BstAFI	CTTAAG	1 cut(s)	1726
BstAUI	TGTACA	1 cut(s)	1148
BstC8I	GCNNGC	3 cut(s)	1251, 1780, 1787
BstDEI	CTNAG	8 cut(s)	84, 307, 594, 781, 1165, 1308, 1353, 1699
BstHHI	GCGC	1 cut(s)	1378
BstKTI	GATC	9 cut(s)	82, 125, 533, 629, 802, 811, 1201, 1372, 1801
BstMAI	GTCTC	4 cut(s)	366, 1349, 1646, 1702
BstMBI	GATC	9 cut(s)	79, 122, 530, 626, 799, 808, 1198, 1369, 1798
BstMWI	GCNNNNNNNGC	2 cut(s)	1016, 1562
BstNI	CCWGG	6 cut(s)	96, 908, 1015, 1132, 1562, 1715
BstNSI	RCATGY	1 cut(s)	1181
BstSCI	CCNGG	8 cut(s)	94, 837, 838, 906, 1013, 1130, 1560, 1713
BstSFI	CTRYAG	4 cut(s)	612, 855, 1251, 1780
BstSLI	GKGCMC	1 cut(s)	494
BstV1I	GCAGC	8 cut(s)	598, 626, 974, 1265, 1525, 1699, 1720, 1794
BstX2I	RGATCY	3 cut(s)	79, 122, 1369
BstYI	RGATCY	3 cut(s)	79, 122, 1369
BsuI	GTATCC	2 cut(s)	396, 416
BsuRI	GGCC	4 cut(s)	757, 911, 1190, 1767
BtsI	GCAGTG	2 cut(s)	1291, 1604
BtsIMutI	CAGTG	5 cut(s)	700, 1291, 1316, 1604, 1689
BveI	ACCTGC	2 cut(s)	1425, 1637
Cac8I	GCNNGC	3 cut(s)	1251, 1780, 1787
CciI	TCATGA	1 cut(s)	1405
CfoI	GCGC	1 cut(s)	1378
Cfr13I	GGNCC	2 cut(s)	351, 1188
Cfr9I	CCCGGG	1 cut(s)	838
Csp6I	GTAC	3 cut(s)	1149, 1364, 1732
CviAII	CATG	9 cut(s)	61, 335, 584, 991, 1178, 1196, 1241, 1406, 1600
CviQI	GTAC	3 cut(s)	1149, 1364, 1732
DdeI	CTNAG	8 cut(s)	84, 307, 594, 781, 1165, 1308, 1353, 1699
DpnI	GATC	9 cut(s)	81, 124, 532, 628, 801, 810, 1200, 1371, 1800
DpnII	GATC	9 cut(s)	79, 122, 530, 626, 799, 808, 1198, 1369, 1798
DraI	TTTAAA	1 cut(s)	252
DraIII	CACNNNGTG	1 cut(s)	1552
Eam1104I	CTCTTC	2 cut(s)	62, 1503
EarI	CTCTTC	2 cut(s)	62, 1503
EciI	GGCGGA	1 cut(s)	1105
Ecl136II	GAGCTC	1 cut(s)	572
Eco130I	CCWWGG	3 cut(s)	473, 826, 1636
Eco147I	AGGCCT	1 cut(s)	757
Eco24I	GRGCYC	1 cut(s)	574
Eco31I	GGTCTC	2 cut(s)	366, 1646
Eco47I	GGWCC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	572
Eco57I	CTGAAG	3 cut(s)	216, 1484, 1757
Eco88I	CYCGRG	1 cut(s)	838
EcoICRI	GAGCTC	1 cut(s)	572
EcoO109I	RGGNCCY	2 cut(s)	351, 1188
EcoRI	GAATTC	1 cut(s)	409
EcoRII	CCWGG	6 cut(s)	94, 906, 1013, 1130, 1560, 1713
EcoT14I	CCWWGG	3 cut(s)	473, 826, 1636
EcoT22I	ATGCAT	1 cut(s)	1813
EcoT38I	GRGCYC	1 cut(s)	574
ErhI	CCWWGG	3 cut(s)	473, 826, 1636
FaeI	CATG	9 cut(s)	64, 338, 587, 994, 1181, 1199, 1244, 1409, 1603
FalI	AAGNNNNNCTT	2 cut(s)	994, 1026
FaqI	GGGAC	2 cut(s)	364, 1571
FatI	CATG	9 cut(s)	60, 334, 583, 990, 1177, 1195, 1240, 1405, 1599
FauI	CCCGC	1 cut(s)	1150
FauNDI	CATATG	1 cut(s)	1516
FbaI	TGATCA	1 cut(s)	1798
Fnu4HI	GCNGC	8 cut(s)	612, 615, 988, 1254, 1539, 1688, 1709, 1783
FriOI	GRGCYC	1 cut(s)	574
Fsp4HI	GCNGC	8 cut(s)	612, 615, 988, 1254, 1539, 1688, 1709, 1783
FspBI	CTAG	1 cut(s)	888
GlaI	GCGC	1 cut(s)	1377
GluI	GCNGC	8 cut(s)	612, 615, 988, 1254, 1539, 1688, 1709, 1783
GsuI	CTGGAG	1 cut(s)	1697
HaeIII	GGCC	4 cut(s)	757, 911, 1190, 1767
HapII	CCGG	2 cut(s)	839, 866
HhaI	GCGC	1 cut(s)	1378
Hin1II	CATG	9 cut(s)	64, 338, 587, 994, 1181, 1199, 1244, 1409, 1603
Hin6I	GCGC	1 cut(s)	1376
HinP1I	GCGC	1 cut(s)	1376
HincII	GTYRAC	3 cut(s)	133, 283, 691
HindII	GTYRAC	3 cut(s)	133, 283, 691
HinfI	GANTC	8 cut(s)	50, 70, 698, 715, 851, 956, 962, 1615
HpaII	CCGG	2 cut(s)	839, 866
HphI	GGTGA	5 cut(s)	523, 674, 737, 1550, 1812
Hpy166II	GTNNAC	5 cut(s)	133, 283, 492, 691, 1028
Hpy188I	TCNGA	6 cut(s)	415, 655, 808, 961, 1203, 1503
Hpy188III	TCNNGA	8 cut(s)	181, 194, 767, 866, 1171, 1329, 1406, 1701
Hpy8I	GTNNAC	5 cut(s)	133, 283, 492, 691, 1028
Hpy99I	CGWCG	1 cut(s)	609
HpyAV	CCTTC	3 cut(s)	67, 362, 1750
HpyCH4III	ACNGT	3 cut(s)	695, 1085, 1265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1016, 1562
HpyF3I	CTNAG	8 cut(s)	84, 307, 594, 781, 1165, 1308, 1353, 1699
Hsp92II	CATG	9 cut(s)	64, 338, 587, 994, 1181, 1199, 1244, 1409, 1603
HspAI	GCGC	1 cut(s)	1376
KflI	GGGWCCC	1 cut(s)	351
Kpn2I	TCCGGA	1 cut(s)	865
KpnI	GGTACC	1 cut(s)	1735
Ksp22I	TGATCA	1 cut(s)	1798
Kzo9I	GATC	9 cut(s)	79, 122, 530, 626, 799, 808, 1198, 1369, 1798
LmnI	GCTCC	9 cut(s)	154, 477, 569, 577, 921, 1134, 1463, 1526, 1716
Lsp1109I	GCAGC	8 cut(s)	598, 626, 974, 1265, 1525, 1699, 1720, 1794
LweI	GCATC	7 cut(s)	626, 794, 931, 1151, 1586, 1765, 1820
MaeI	CTAG	1 cut(s)	888
MaeIII	GTNAC	4 cut(s)	695, 793, 1602, 1818
MalI	GATC	9 cut(s)	81, 124, 532, 628, 801, 810, 1200, 1371, 1800
MboI	GATC	9 cut(s)	79, 122, 530, 626, 799, 808, 1198, 1369, 1798
MboII	GAAGA	9 cut(s)	35, 79, 209, 526, 911, 965, 984, 1490, 1610
MfeI	CAATTG	1 cut(s)	427
MflI	RGATCY	3 cut(s)	79, 122, 1369
MhlI	GDGCHC	2 cut(s)	494, 574
MlyI	GAGTC	3 cut(s)	79, 692, 956
Mph1103I	ATGCAT	1 cut(s)	1813
MroI	TCCGGA	1 cut(s)	865
MroXI	GAANNNNTTC	3 cut(s)	27, 330, 1861
MseI	TTAA	5 cut(s)	243, 251, 456, 735, 1727
MslI	CAYNNNNRTG	3 cut(s)	582, 1239, 1548
MspCI	CTTAAG	1 cut(s)	1726
MspI	CCGG	2 cut(s)	839, 866
MspR9I	CCNGG	8 cut(s)	96, 839, 840, 908, 1015, 1132, 1562, 1715
MunI	CAATTG	1 cut(s)	427
Mva1269I	GAATGC	2 cut(s)	211, 1510
MvaI	CCWGG	6 cut(s)	96, 908, 1015, 1132, 1562, 1715
MwoI	GCNNNNNNNGC	2 cut(s)	1016, 1562
NciI	CCSGG	2 cut(s)	839, 840
NdeI	CATATG	1 cut(s)	1516
NdeII	GATC	9 cut(s)	79, 122, 530, 626, 799, 808, 1198, 1369, 1798
NlaIII	CATG	9 cut(s)	64, 338, 587, 994, 1181, 1199, 1244, 1409, 1603
NlaIV	GGNNCC	5 cut(s)	352, 353, 1522, 1634, 1733
NmuCI	GTSAC	3 cut(s)	695, 1602, 1818
NsiI	ATGCAT	1 cut(s)	1813
NspI	RCATGY	1 cut(s)	1181
PagI	TCATGA	1 cut(s)	1405
PceI	AGGCCT	1 cut(s)	757
PctI	GAATGC	2 cut(s)	211, 1510
PdmI	GAANNNNTTC	3 cut(s)	27, 330, 1861
PfeI	GAWTC	5 cut(s)	50, 715, 851, 956, 1615
PfoI	TCCNGGA	1 cut(s)	1713
PkrI	GCNGC	8 cut(s)	613, 616, 989, 1255, 1540, 1689, 1710, 1784
PleI	GAGTC	3 cut(s)	78, 692, 956
PpsI	GAGTC	3 cut(s)	78, 692, 956
PpuMI	RGGWCCY	1 cut(s)	351
Psp124BI	GAGCTC	1 cut(s)	574
Psp5II	RGGWCCY	1 cut(s)	351
Psp6I	CCWGG	6 cut(s)	94, 906, 1013, 1130, 1560, 1713
PspGI	CCWGG	6 cut(s)	94, 906, 1013, 1130, 1560, 1713
PspN4I	GGNNCC	5 cut(s)	352, 353, 1522, 1634, 1733
PspPI	GGNCC	2 cut(s)	351, 1188
PspPPI	RGGWCCY	1 cut(s)	351
PstI	CTGCAG	4 cut(s)	616, 859, 1255, 1784
PsuI	RGATCY	3 cut(s)	79, 122, 1369
RsaI	GTAC	3 cut(s)	1150, 1365, 1733
RsaNI	GTAC	3 cut(s)	1149, 1364, 1732
RseI	CAYNNNNRTG	3 cut(s)	582, 1239, 1548
SacI	GAGCTC	1 cut(s)	574
SaqAI	TTAA	5 cut(s)	243, 251, 456, 735, 1727
SatI	GCNGC	8 cut(s)	612, 615, 988, 1254, 1539, 1688, 1709, 1783
Sau3AI	GATC	9 cut(s)	79, 122, 530, 626, 799, 808, 1198, 1369, 1798
Sau96I	GGNCC	2 cut(s)	351, 1188
SchI	GAGTC	3 cut(s)	79, 692, 956
ScrFI	CCNGG	8 cut(s)	96, 839, 840, 908, 1015, 1132, 1562, 1715
SduI	GDGCHC	2 cut(s)	494, 574
SfaNI	GCATC	7 cut(s)	626, 794, 931, 1151, 1586, 1765, 1820
SfcI	CTRYAG	4 cut(s)	612, 855, 1251, 1780
SinI	GGWCC	1 cut(s)	351
SmaI	CCCGGG	1 cut(s)	840
SmiI	ATTTAAAT	1 cut(s)	252
SmiMI	CAYNNNNRTG	3 cut(s)	582, 1239, 1548
SmlI	CTYRAG	2 cut(s)	1279, 1726
SmoI	CTYRAG	2 cut(s)	1279, 1726
SseBI	AGGCCT	1 cut(s)	757
SsiI	CCGC	2 cut(s)	1090, 1157
SspMI	CTAG	1 cut(s)	888
SstI	GAGCTC	1 cut(s)	574
StuI	AGGCCT	1 cut(s)	757
StyD4I	CCNGG	8 cut(s)	94, 837, 838, 906, 1013, 1130, 1560, 1713
StyI	CCWWGG	3 cut(s)	473, 826, 1636
SwaI	ATTTAAAT	1 cut(s)	252
TaaI	ACNGT	3 cut(s)	695, 1085, 1265
TaqI	TCGA	2 cut(s)	604, 1062
TatI	WGTACW	2 cut(s)	1148, 1363
TfiI	GAWTC	5 cut(s)	50, 715, 851, 956, 1615
Tru1I	TTAA	5 cut(s)	243, 251, 456, 735, 1727
Tru9I	TTAA	5 cut(s)	243, 251, 456, 735, 1727
TscAI	CASTG	5 cut(s)	700, 1291, 1323, 1611, 1689
TseFI	GTSAC	3 cut(s)	695, 1602, 1818
TseI	GCWGC	8 cut(s)	611, 614, 987, 1253, 1538, 1687, 1708, 1782
Tsp45I	GTSAC	3 cut(s)	695, 1602, 1818
TspGWI	ACGGA	3 cut(s)	778, 934, 1013
TspMI	CCCGGG	1 cut(s)	838
TspRI	CASTG	5 cut(s)	700, 1291, 1323, 1611, 1689
Vha464I	CTTAAG	1 cut(s)	1726
VneI	GTGCAC	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	351
XapI	RAATTY	6 cut(s)	188, 247, 409, 1205, 1400, 1438
XceI	RCATGY	1 cut(s)	1181
XmaI	CCCGGG	1 cut(s)	838
XmnI	GAANNNNTTC	3 cut(s)	27, 330, 1861
XspI	CTAG	1 cut(s)	888
Zsp2I	ATGCAT	1 cut(s)	1813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.