Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033808.1

Orthogroup ID

OG0013690

Physical Location & Seq

Genomic Coordinates Reverse (-)

6575 .. 7129

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033808.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ctggcgttatccagaaatgccaacattccaaaacctgagacacaagtacaagatcttgcgcctcattttgatagaaaaccagaatttcatgacgaatacctgcgacctacttatcttgggaatttcaacaatgacttgaaatatggagcttcctccatctaccaaatgaagttcccacctcttcagaatgcaatgccatatggctcctttggtctaaatgctcctcatcacaatgtggctcaccaggctggttctgttgcatctattgtcccagacttctccatgtcactgcccttgaatcttcccccatctgggaatcttggtctcgcaggttttgatttcaataatggaaagtcagtatatccagtgcagccttatgtctcaggacagcagctccaggagaatgacttaaggtacctgaagccaaaacaagagcagaaggatgatggcctttatgatgcctgcagcctgcctatcattgatcagggaaatgcatcattgtcaccatcctcatccttactctatcacagaatgatgggaagctattcatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007163 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009889 GO:0009942 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

184

Amino Acids

20.35

Weight (kDa)

6.04

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00500
malus_domestica	MD04G1244700.v1.1 MD12G1260600.v1.1
prunus_persica	Prupe.6G361300_v2.0.a1
pyrus_communis	pycom04g21550 pycom12g23860
rosa_chinensis	RchiOBHm_Chr3g0447881
rosa_laevigata	RLG00000025964
rosa_multiflora	Rmu_sc0005969.1_g000001 Rmu_sc0020869.1_g000002 Rmu_sc0033808.1_g000003
rosa_roxburghii	Rroxscaffold_6G00426080
rosa_rugosa	Rorug02G0606800
rosa_samantha	Rh3AG006000 Rh3BG005700 Rh3CG005900 Rh3DG006200
rosa_wichuraiana	Rw3G000460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	108, 320
Acc65I	GGTACC	1 cut(s)	414
AccB1I	GGYRCC	1 cut(s)	414
AcsI	RAATTY	2 cut(s)	83, 121
AcuI	CTGAAG	2 cut(s)	167, 440
AdeI	CACNNNGTG	1 cut(s)	235
AfaI	GTAC	2 cut(s)	48, 416
AfiI	CCNNNNNNNGG	2 cut(s)	311, 312
AflII	CTTAAG	1 cut(s)	409
AgsI	TTSAA	4 cut(s)	127, 139, 298, 343
AjnI	CCWGG	2 cut(s)	243, 396
AluBI	AGCT	3 cut(s)	149, 394, 543
AluI	AGCT	3 cut(s)	149, 394, 543
Alw26I	GTCTC	3 cut(s)	32, 329, 385
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	3 cut(s)	370, 391, 465
ApoI	RAATTY	2 cut(s)	83, 121
Asp700I	GAANNNNTTC	1 cut(s)	544
Asp718I	GGTACC	1 cut(s)	414
AspLEI	GCGC	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	233, 495
BanI	GGYRCC	1 cut(s)	414
BbvI	GCAGC	3 cut(s)	382, 403, 477
BccI	CCATC	5 cut(s)	164, 316, 440, 514, 529
BciT130I	CCWGG	2 cut(s)	245, 398
BclI	TGATCA	1 cut(s)	481
BcoDI	GTCTC	3 cut(s)	32, 329, 385
BfmI	CTRYAG	1 cut(s)	463
BfrI	CTTAAG	1 cut(s)	409
BfuAI	ACCTGC	2 cut(s)	108, 320
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	3 cut(s)	371, 392, 466
BlsI	GCNGC	3 cut(s)	372, 393, 467
Bme1390I	CCNGG	2 cut(s)	245, 398
BmiI	GGNNCC	2 cut(s)	205, 416
BmrFI	CCNGG	2 cut(s)	245, 398
BmsI	GCATC	3 cut(s)	269, 448, 503
BpmI	CTGGAG	1 cut(s)	380
BsaI	GGTCTC	1 cut(s)	329
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 312
Bse1I	ACTGG	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	245, 398
BseGI	GGATG	3 cut(s)	448, 506, 512
BseLI	CCNNNNNNNGG	2 cut(s)	311, 312
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	2 cut(s)	27, 396
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	382, 403, 477
BsgI	GTGCAG	1 cut(s)	389
BshFI	GGCC	1 cut(s)	450
BshNI	GGYRCC	1 cut(s)	414
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	311, 312
BsmAI	GTCTC	3 cut(s)	32, 329, 385
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	450
Bso31I	GGTCTC	1 cut(s)	329
Bsp143I	GATC	2 cut(s)	52, 481
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	2 cut(s)	28, 395
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	205, 416
BspMAI	CTGCAG	1 cut(s)	467
BspMI	ACCTGC	2 cut(s)	108, 320
BspT107I	GGYRCC	1 cut(s)	414
BspTI	CTTAAG	1 cut(s)	409
BspTNI	GGTCTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	365
BssMI	GATC	2 cut(s)	52, 481
Bst2UI	CCWGG	2 cut(s)	245, 398
Bst6I	CTCTTC	1 cut(s)	186
BstAFI	CTTAAG	1 cut(s)	409
BstC8I	GCNNGC	2 cut(s)	463, 470
BstDEI	CTNAG	2 cut(s)	36, 382
BstF5I	GGATG	3 cut(s)	448, 506, 512
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	2 cut(s)	55, 484
BstMAI	GTCTC	3 cut(s)	32, 329, 385
BstMBI	GATC	2 cut(s)	52, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	2 cut(s)	245, 398
BstSCI	CCNGG	2 cut(s)	243, 396
BstSFI	CTRYAG	1 cut(s)	463
BstV1I	GCAGC	3 cut(s)	382, 403, 477
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	450
BtsCI	GGATG	3 cut(s)	448, 506, 512
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	2 cut(s)	287, 372
BveI	ACCTGC	2 cut(s)	108, 320
Cac8I	GCNNGC	2 cut(s)	463, 470
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	47, 415
CviAII	CATG	2 cut(s)	89, 283
CviQI	GTAC	2 cut(s)	47, 415
DdeI	CTNAG	2 cut(s)	36, 382
DpnI	GATC	2 cut(s)	54, 483
DpnII	GATC	2 cut(s)	52, 481
DraIII	CACNNNGTG	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	329
Eco57I	CTGAAG	2 cut(s)	167, 440
EcoRII	CCWGG	2 cut(s)	243, 396
EcoT22I	ATGCAT	1 cut(s)	496
FaeI	CATG	2 cut(s)	92, 286
FaiI	YATR	9 cut(s)	90, 144, 199, 201, 284, 361, 378, 456, 553
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	2 cut(s)	88, 282
FauNDI	CATATG	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	3 cut(s)	371, 392, 466
FokI	GGATG	3 cut(s)	455, 493, 499
Fsp4HI	GCNGC	3 cut(s)	371, 392, 466
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	3 cut(s)	371, 392, 466
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	450
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	2 cut(s)	92, 286
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HinfI	GANTC	2 cut(s)	298, 316
HphI	GGTGA	2 cut(s)	233, 495
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	3 cut(s)	12, 89, 384
HpyAV	CCTTC	1 cut(s)	433
HpyCH4V	TGCA	5 cut(s)	191, 260, 370, 465, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	2 cut(s)	36, 382
Hsp92II	CATG	2 cut(s)	92, 286
HspAI	GCGC	1 cut(s)	59
KpnI	GGTACC	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	2 cut(s)	52, 481
LmnI	GCTCC	4 cut(s)	146, 209, 226, 399
Lsp1109I	GCAGC	3 cut(s)	382, 403, 477
LweI	GCATC	3 cut(s)	269, 448, 503
MaeIII	GTNAC	2 cut(s)	285, 501
MalI	GATC	2 cut(s)	54, 483
MboI	GATC	2 cut(s)	52, 481
MboII	GAAGA	2 cut(s)	173, 293
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	2 cut(s)	83, 121
MnlI	CCTC	5 cut(s)	72, 163, 189, 234, 520
Mph1103I	ATGCAT	1 cut(s)	496
MroXI	GAANNNNTTC	1 cut(s)	544
MseI	TTAA	1 cut(s)	410
MslI	CAYNNNNRTG	1 cut(s)	231
MspCI	CTTAAG	1 cut(s)	409
MspR9I	CCNGG	2 cut(s)	245, 398
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	2 cut(s)	245, 398
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	2 cut(s)	52, 481
NlaIII	CATG	2 cut(s)	92, 286
NlaIV	GGNNCC	2 cut(s)	205, 416
NmuCI	GTSAC	2 cut(s)	285, 501
NsiI	ATGCAT	1 cut(s)	496
PagI	TCATGA	1 cut(s)	88
PctI	GAATGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	544
PfeI	GAWTC	2 cut(s)	298, 316
PfoI	TCCNGGA	1 cut(s)	396
PkrI	GCNGC	3 cut(s)	372, 393, 467
Psp6I	CCWGG	2 cut(s)	243, 396
PspGI	CCWGG	2 cut(s)	243, 396
PspN4I	GGNNCC	2 cut(s)	205, 416
PstI	CTGCAG	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	2 cut(s)	48, 416
RsaNI	GTAC	2 cut(s)	47, 415
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	3 cut(s)	371, 392, 466
Sau3AI	GATC	2 cut(s)	52, 481
ScrFI	CCNGG	2 cut(s)	245, 398
SfaNI	GCATC	3 cut(s)	269, 448, 503
SfcI	CTRYAG	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
Sse9I	AATT	2 cut(s)	83, 121
StyD4I	CCNGG	2 cut(s)	243, 396
TasI	AATT	2 cut(s)	83, 121
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	298, 316
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TscAI	CASTG	2 cut(s)	294, 372
TseFI	GTSAC	2 cut(s)	285, 501
TseI	GCWGC	3 cut(s)	370, 391, 465
Tsp45I	GTSAC	2 cut(s)	285, 501
TspDTI	ATGAA	3 cut(s)	77, 182, 537
TspRI	CASTG	2 cut(s)	294, 372
Vha464I	CTTAAG	1 cut(s)	409
XapI	RAATTY	2 cut(s)	83, 121
XmnI	GAANNNNTTC	1 cut(s)	544
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.