Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005969.1

Orthogroup ID

OG0013690

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 649

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005969.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 649 bp

cgagggaaaacacaaccatgaagtgcctgcagccagaaacagtaatcatataaactcaagcagtgcaaatggacatccaccaactcagtcagcactggcgttatccagaaataccaacattccaaaacctgagacacaagtacaagatcttgcgcctcattttgatagaaaaccagaatttcatgacgaatacctgcgacctacttatcttgggaatttcaacaatgacttgaaatatggagcttcctccatctaccaaatgaagttcccacctcttcagaatgcaatgccatatggctcctttggtctaaatgctcctcatcacaatgtggctcaccaggctggttctgttgcatctattgtcccagacttctccatgtcactgcccttgaatcttcccccatctgggaatcttggtctcgcaggttttgatttcaataatggaaagtcagtatatccagtgcagccttatgtctcaggacagcagctccaggagaatgacttaaggtacctgaagccaaaacaagagcagaaggatgatggcctttatgatgcctgcagcctgcctatcattgatcagggaaatgcatcattgtcaccatcctcatccttactctatcacagaatgatgggaagctattcatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007163 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009889 GO:0009942 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

215

Amino Acids

23.61

Weight (kDa)

6.37

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00500
malus_domestica	MD04G1244700.v1.1 MD12G1260600.v1.1
prunus_persica	Prupe.6G361300_v2.0.a1
pyrus_communis	pycom04g21550 pycom12g23860
rosa_chinensis	RchiOBHm_Chr3g0447881
rosa_laevigata	RLG00000025964
rosa_multiflora	Rmu_sc0005969.1_g000001 Rmu_sc0020869.1_g000002 Rmu_sc0033808.1_g000003
rosa_roxburghii	Rroxscaffold_6G00426080
rosa_rugosa	Rorug02G0606800
rosa_samantha	Rh3AG006000 Rh3BG005700 Rh3CG005900 Rh3DG006200
rosa_wichuraiana	Rw3G000460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	202, 414
Acc65I	GGTACC	1 cut(s)	508
AccB1I	GGYRCC	1 cut(s)	508
AcsI	RAATTY	2 cut(s)	177, 215
AcuI	CTGAAG	2 cut(s)	261, 534
AdeI	CACNNNGTG	1 cut(s)	329
AfaI	GTAC	2 cut(s)	142, 510
AfiI	CCNNNNNNNGG	2 cut(s)	405, 406
AflII	CTTAAG	1 cut(s)	503
AgsI	TTSAA	4 cut(s)	221, 233, 392, 437
AjnI	CCWGG	2 cut(s)	337, 490
AluBI	AGCT	3 cut(s)	243, 488, 637
AluI	AGCT	3 cut(s)	243, 488, 637
Alw26I	GTCTC	3 cut(s)	126, 423, 479
AoxI	GGCC	1 cut(s)	542
ApeKI	GCWGC	4 cut(s)	30, 464, 485, 559
ApoI	RAATTY	2 cut(s)	177, 215
Asp700I	GAANNNNTTC	1 cut(s)	638
Asp718I	GGTACC	1 cut(s)	508
AspLEI	GCGC	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	327, 589
BanI	GGYRCC	1 cut(s)	508
BbvI	GCAGC	4 cut(s)	42, 476, 497, 571
BccI	CCATC	5 cut(s)	258, 410, 534, 608, 623
BciT130I	CCWGG	2 cut(s)	339, 492
BclI	TGATCA	1 cut(s)	575
BcoDI	GTCTC	3 cut(s)	126, 423, 479
BfmI	CTRYAG	2 cut(s)	28, 557
BfrI	CTTAAG	1 cut(s)	503
BfuAI	ACCTGC	2 cut(s)	202, 414
BglII	AGATCT	1 cut(s)	146
BisI	GCNGC	4 cut(s)	31, 465, 486, 560
BlsI	GCNGC	4 cut(s)	32, 466, 487, 561
Bme1390I	CCNGG	2 cut(s)	339, 492
BmiI	GGNNCC	2 cut(s)	299, 510
BmrFI	CCNGG	2 cut(s)	339, 492
BmsI	GCATC	3 cut(s)	363, 542, 597
BpmI	CTGGAG	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	423
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 406
Bse1I	ACTGG	2 cut(s)	100, 459
Bse3DI	GCAATG	1 cut(s)	292
BseBI	CCWGG	2 cut(s)	339, 492
BseGI	GGATG	4 cut(s)	74, 542, 600, 606
BseLI	CCNNNNNNNGG	2 cut(s)	405, 406
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	3 cut(s)	99, 121, 490
BseNI	ACTGG	2 cut(s)	100, 459
BseRI	GAGGAG	1 cut(s)	307
BseXI	GCAGC	4 cut(s)	42, 476, 497, 571
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	1 cut(s)	544
BshNI	GGYRCC	1 cut(s)	508
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	405, 406
BsmAI	GTCTC	3 cut(s)	126, 423, 479
BsmFI	GGGAC	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	544
Bso31I	GGTCTC	1 cut(s)	423
Bsp143I	GATC	2 cut(s)	146, 575
BspANI	GGCC	1 cut(s)	544
BspCNI	CTCAG	3 cut(s)	98, 122, 489
BspHI	TCATGA	1 cut(s)	182
BspLI	GGNNCC	2 cut(s)	299, 510
BspMAI	CTGCAG	2 cut(s)	32, 561
BspMI	ACCTGC	2 cut(s)	202, 414
BspT107I	GGYRCC	1 cut(s)	508
BspTI	CTTAAG	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	423
BsrDI	GCAATG	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	100, 459
BssMI	GATC	2 cut(s)	146, 575
Bst2UI	CCWGG	2 cut(s)	339, 492
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	280
BstAFI	CTTAAG	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	28, 557, 564
BstDEI	CTNAG	3 cut(s)	85, 130, 476
BstF5I	GGATG	4 cut(s)	74, 542, 600, 606
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	2 cut(s)	149, 578
BstMAI	GTCTC	3 cut(s)	126, 423, 479
BstMBI	GATC	2 cut(s)	146, 575
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstNI	CCWGG	2 cut(s)	339, 492
BstSCI	CCNGG	2 cut(s)	337, 490
BstSFI	CTRYAG	2 cut(s)	28, 557
BstV1I	GCAGC	4 cut(s)	42, 476, 497, 571
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	544
BtsCI	GGATG	4 cut(s)	74, 542, 600, 606
BtsI	GCAGTG	2 cut(s)	68, 381
BtsIMutI	CAGTG	4 cut(s)	68, 93, 381, 466
BveI	ACCTGC	2 cut(s)	202, 414
Cac8I	GCNNGC	3 cut(s)	28, 557, 564
CciI	TCATGA	1 cut(s)	182
CfoI	GCGC	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	141, 509
CviAII	CATG	3 cut(s)	18, 183, 377
CviQI	GTAC	2 cut(s)	141, 509
DdeI	CTNAG	3 cut(s)	85, 130, 476
DpnI	GATC	2 cut(s)	148, 577
DpnII	GATC	2 cut(s)	146, 575
DraIII	CACNNNGTG	1 cut(s)	329
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Eco31I	GGTCTC	1 cut(s)	423
Eco57I	CTGAAG	2 cut(s)	261, 534
EcoRII	CCWGG	2 cut(s)	337, 490
EcoT22I	ATGCAT	1 cut(s)	590
FaeI	CATG	3 cut(s)	21, 186, 380
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	3 cut(s)	17, 182, 376
FauNDI	CATATG	1 cut(s)	293
FbaI	TGATCA	1 cut(s)	575
Fnu4HI	GCNGC	4 cut(s)	31, 465, 486, 560
FokI	GGATG	4 cut(s)	61, 549, 587, 593
Fsp4HI	GCNGC	4 cut(s)	31, 465, 486, 560
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	4 cut(s)	31, 465, 486, 560
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	1 cut(s)	544
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	3 cut(s)	21, 186, 380
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	2 cut(s)	392, 410
HphI	GGTGA	2 cut(s)	327, 589
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	3 cut(s)	106, 183, 478
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4V	TGCA	7 cut(s)	30, 66, 285, 354, 464, 559, 588
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	3 cut(s)	85, 130, 476
Hsp92II	CATG	3 cut(s)	21, 186, 380
HspAI	GCGC	1 cut(s)	153
KpnI	GGTACC	1 cut(s)	512
Ksp22I	TGATCA	1 cut(s)	575
Kzo9I	GATC	2 cut(s)	146, 575
LmnI	GCTCC	4 cut(s)	240, 303, 320, 493
Lsp1109I	GCAGC	4 cut(s)	42, 476, 497, 571
LweI	GCATC	3 cut(s)	363, 542, 597
MaeIII	GTNAC	2 cut(s)	379, 595
MalI	GATC	2 cut(s)	148, 577
MboI	GATC	2 cut(s)	146, 575
MboII	GAAGA	2 cut(s)	267, 387
MflI	RGATCY	1 cut(s)	146
MluCI	AATT	2 cut(s)	177, 215
MnlI	CCTC	5 cut(s)	166, 257, 283, 328, 614
Mph1103I	ATGCAT	1 cut(s)	590
MroXI	GAANNNNTTC	1 cut(s)	638
MseI	TTAA	1 cut(s)	504
MslI	CAYNNNNRTG	2 cut(s)	16, 325
MspCI	CTTAAG	1 cut(s)	503
MspR9I	CCNGG	2 cut(s)	339, 492
Mva1269I	GAATGC	1 cut(s)	287
MvaI	CCWGG	2 cut(s)	339, 492
MwoI	GCNNNNNNNGC	1 cut(s)	339
NdeI	CATATG	1 cut(s)	293
NdeII	GATC	2 cut(s)	146, 575
NlaIII	CATG	3 cut(s)	21, 186, 380
NlaIV	GGNNCC	2 cut(s)	299, 510
NmuCI	GTSAC	2 cut(s)	379, 595
NsiI	ATGCAT	1 cut(s)	590
PagI	TCATGA	1 cut(s)	182
PctI	GAATGC	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	2 cut(s)	392, 410
PfoI	TCCNGGA	1 cut(s)	490
PkrI	GCNGC	4 cut(s)	32, 466, 487, 561
Psp6I	CCWGG	2 cut(s)	337, 490
PspGI	CCWGG	2 cut(s)	337, 490
PspN4I	GGNNCC	2 cut(s)	299, 510
PstI	CTGCAG	2 cut(s)	32, 561
PsuI	RGATCY	1 cut(s)	146
RsaI	GTAC	2 cut(s)	142, 510
RsaNI	GTAC	2 cut(s)	141, 509
RseI	CAYNNNNRTG	2 cut(s)	16, 325
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	4 cut(s)	31, 465, 486, 560
Sau3AI	GATC	2 cut(s)	146, 575
ScrFI	CCNGG	2 cut(s)	339, 492
SfaNI	GCATC	3 cut(s)	363, 542, 597
SfcI	CTRYAG	2 cut(s)	28, 557
SmiMI	CAYNNNNRTG	2 cut(s)	16, 325
SmlI	CTYRAG	2 cut(s)	56, 503
SmoI	CTYRAG	2 cut(s)	56, 503
Sse9I	AATT	2 cut(s)	177, 215
StyD4I	CCNGG	2 cut(s)	337, 490
TaaI	ACNGT	1 cut(s)	42
TasI	AATT	2 cut(s)	177, 215
TatI	WGTACW	1 cut(s)	140
TfiI	GAWTC	2 cut(s)	392, 410
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	4 cut(s)	68, 100, 388, 466
TseFI	GTSAC	2 cut(s)	379, 595
TseI	GCWGC	4 cut(s)	30, 464, 485, 559
Tsp45I	GTSAC	2 cut(s)	379, 595
TspDTI	ATGAA	4 cut(s)	34, 171, 276, 631
TspRI	CASTG	4 cut(s)	68, 100, 388, 466
Vha464I	CTTAAG	1 cut(s)	503
XapI	RAATTY	2 cut(s)	177, 215
XmnI	GAANNNNTTC	1 cut(s)	638
Zsp2I	ATGCAT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.