Rmu_sc0020869.1_g000002
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020869.1
Physical Location & Seq
Forward (+)
4439 .. 7329
2891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020869.1_g000002.1.cds

Sequence Viewer

Length: 1470 bp
atggagcaagcaagcgatgtggtcgttgcagagaacaaagccaaatatggaggtggtggcggtagcgttagcatagccgagaggagggcagccaagtgtggattcaatgcggagaggatcaatacggcgcgtttcaggaggaccaacaccagccctctgccttcgccggtggagaggtctccttgccacctcactattcctcccggcatcagtcccaccgctttgctcgactcccccatgatgctccccaattctcaggcattgccatctcccactaccggaacttttccattgcttcctcctagtgatgacagttcaatgctgaaatctgcaactaatgaagatgttcgtagggggagtggttttgattcatccttcatgttgaagagtcaaggagatcctaagtatctgccaggttattctggttttgaaaatcagggatctaatgttgactatcaagctcttgttttggagcaacagccaatggattttgatttcccgatggaatttcctgaagaagtgaatgcaaaacactatgctgttgatccatctaatgatgttaagaatttaaatagtgtggtaatgaatgagagctgtgttgacttgcaaatgcctcattccagcttagcttcttttcccaaagaagttattcatggggaggatgttgggacccatcaacttttggaaggagaccatagagggtatccatctctgggaatggcaaggaattcagaggatggatacaattggaggaagtatgggcagaaacaggttaaaggtagtgaatatccaaggagctactataagtgcacacatccaaattgtcaggtgaagaaaaaggtggaacgatcctttgatggtcaaataacagaaatcatttacaagggagctcctcataaccatgcacaacctcagcctaatcgacgagctgcagcatcacttggatcagcattttcatttgatgagatgtcagagatgggtgagggcaatagaacctctgtcaaagttgacagtgactcactttgggcaaagattcagtctggtgaggatattaagagtggttatgatgggaggcctgatggtctggaaaggacttcctcagcatccgttgttactgatctttctgatccattatcggctacccaaggaaaatccccgggtatctttgaatctgtagacactccagagttttcatccacacttgctagtgttgatgaagatgaccaggccaccctacggagcatatcgcttggagaggatgcagataatgaagaatctgactcaaaaagaagaaagaaagatagctgcatgattgaaacaagtatagcttccagggctgtccgtgaaccaagagtggttgtccaaattgagagtgaaatcgacatacttgatgatggctaccgttggcggaagtatggacaaaaagttgtcaaaggaaatccaaaccctaggtatgctattgctgattag

Protein Analysis

489

Amino Acids

53.64

Weight (kDa)

5.17

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1176
AccII CGCG 1 cut(s) 130
AciI CCGC 4 cut(s) 60, 110, 219, 1408
AclWI GGATC 7 cut(s) 125, 392, 448, 539, 843, 952, 1121
AcsI RAATTY 3 cut(s) 506, 565, 727
AcuI CTGAAG 1 cut(s) 534
AfiI CCNNNNNNNGG 4 cut(s) 84, 278, 713, 1236
AgsI TTSAA 6 cut(s) 106, 318, 385, 431, 1169, 1316
AjnI CCWGG 3 cut(s) 412, 1224, 1331
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 9 cut(s) 461, 594, 624, 629, 798, 890, 929, 1305, 1328
AluI AGCT 9 cut(s) 461, 594, 624, 629, 798, 890, 929, 1305, 1328
Alw21I GWGCWC 2 cut(s) 812, 892
Alw26I GTCTC 2 cut(s) 183, 684
Alw44I GTGCAC 1 cut(s) 808
AlwI GGATC 7 cut(s) 125, 392, 448, 539, 843, 952, 1121
Ama87I CYCGRG 1 cut(s) 1156
AoxI GGCC 2 cut(s) 1073, 1227
ApaLI GTGCAC 1 cut(s) 808
ApeKI GCWGC 4 cut(s) 89, 929, 932, 1305
ApoI RAATTY 3 cut(s) 506, 565, 727
ArsI GACNNNNNNTTYG 2 cut(s) 1022, 1054
Asp700I GAANNNNTTC 2 cut(s) 345, 648
AspA2I CCTAGG 1 cut(s) 1448
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 2 cut(s) 141, 669
AsuC2I CCSGG 3 cut(s) 204, 1157, 1158
AsuHPI GGTGA 3 cut(s) 841, 992, 1055
AvaI CYCGRG 1 cut(s) 1156
AvaII GGWCC 2 cut(s) 141, 669
AvrII CCTAGG 1 cut(s) 1448
BaeGI GKGCMC 1 cut(s) 812
BanII GRGCYC 1 cut(s) 892
Bbv12I GWGCWC 2 cut(s) 812, 892
BbvCI CCTCAGC 2 cut(s) 912, 1099
BbvI GCAGC 4 cut(s) 101, 916, 944, 1292
BceAI ACGGC 1 cut(s) 141
BciT130I CCWGG 3 cut(s) 414, 1226, 1333
BciVI GTATCC 2 cut(s) 714, 734
BcnI CCSGG 3 cut(s) 204, 1157, 1158
BcoDI GTCTC 2 cut(s) 183, 684
BfaI CTAG 3 cut(s) 303, 1206, 1449
BfmI CTRYAG 2 cut(s) 930, 1173
BfuI GTATCC 2 cut(s) 714, 734
BisI GCNGC 4 cut(s) 90, 930, 933, 1306
BlnI CCTAGG 1 cut(s) 1448
BlpI GCTNAGC 1 cut(s) 625
BlsI GCNGC 4 cut(s) 91, 931, 934, 1307
Bme1390I CCNGG 6 cut(s) 204, 414, 1157, 1158, 1226, 1333
Bme18I GGWCC 2 cut(s) 141, 669
BmeT110I CYCGRG 1 cut(s) 1156
BmgT120I GGNCC 2 cut(s) 141, 669
BmiI GGNNCC 2 cut(s) 670, 671
BmrFI CCNGG 6 cut(s) 204, 414, 1157, 1158, 1226, 1333
BmsI GCATC 5 cut(s) 216, 231, 944, 1112, 1249
BpmI CTGGAG 1 cut(s) 1167
Bpu10I CCTNAGC 2 cut(s) 912, 1099
Bpu1102I GCTNAGC 1 cut(s) 625
BpuMI CCSGG 3 cut(s) 204, 1157, 1158
BsaI GGTCTC 2 cut(s) 183, 684
BsaJI CCNNGG 6 cut(s) 791, 1144, 1155, 1156, 1332, 1448
BsaWI WCCGGW 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 278, 713, 1236
Bse118I RCCGGY 1 cut(s) 166
Bse3DI GCAATG 2 cut(s) 260, 290
BseBI CCWGG 3 cut(s) 414, 1226, 1333
BseDI CCNNGG 6 cut(s) 791, 1144, 1155, 1156, 1332, 1448
BseGI GGATG 7 cut(s) 371, 667, 742, 814, 1103, 1193, 1264
BseLI CCNNNNNNNGG 4 cut(s) 84, 278, 713, 1236
BseMI GCAATG 2 cut(s) 260, 290
BseMII CTCAG 3 cut(s) 269, 926, 1113
BseRI GAGGAG 2 cut(s) 97, 882
BseSI GKGCMC 1 cut(s) 812
BseXI GCAGC 4 cut(s) 101, 916, 944, 1292
Bsh1236I CGCG 1 cut(s) 130
BshFI GGCC 2 cut(s) 1075, 1229
BsiHKAI GWGCWC 2 cut(s) 812, 892
BsiHKCI CYCGRG 1 cut(s) 1156
BsiSI CCGG 4 cut(s) 167, 204, 279, 1157
BslFI GGGAC 2 cut(s) 198, 682
BslI CCNNNNNNNGG 4 cut(s) 84, 278, 713, 1236
BsmAI GTCTC 2 cut(s) 183, 684
BsmFI GGGAC 2 cut(s) 198, 682
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 2 cut(s) 1075, 1229
Bso31I GGTCTC 2 cut(s) 183, 684
BsoBI CYCGRG 1 cut(s) 1156
Bsp1286I GDGCHC 2 cut(s) 812, 892
Bsp143I GATC 8 cut(s) 117, 397, 440, 544, 848, 944, 1117, 1126
Bsp1720I GCTNAGC 1 cut(s) 625
BspACI CCGC 4 cut(s) 60, 110, 219, 1408
BspANI GGCC 2 cut(s) 1075, 1229
BspCNI CTCAG 3 cut(s) 268, 925, 1112
BspFNI CGCG 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 670, 671
BspMAI CTGCAG 1 cut(s) 934
BspPI GGATC 7 cut(s) 125, 392, 448, 539, 843, 952, 1121
BspTNI GGTCTC 2 cut(s) 183, 684
BsrDI GCAATG 2 cut(s) 260, 290
BsrFI RCCGGY 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 6 cut(s) 791, 1144, 1155, 1156, 1332, 1448
BssMI GATC 8 cut(s) 117, 397, 440, 544, 848, 944, 1117, 1126
BssT1I CCWWGG 3 cut(s) 791, 1144, 1448
Bst2UI CCWGG 3 cut(s) 414, 1226, 1333
Bst4CI ACNGT 3 cut(s) 314, 1013, 1403
Bst6I CTCTTC 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 9, 13
BstDEI CTNAG 5 cut(s) 255, 402, 625, 912, 1099
BstF5I GGATG 7 cut(s) 371, 667, 742, 814, 1103, 1193, 1264
BstFNI CGCG 1 cut(s) 130
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 8 cut(s) 120, 400, 443, 547, 851, 947, 1120, 1129
BstMAI GTCTC 2 cut(s) 183, 684
BstMBI GATC 8 cut(s) 117, 397, 440, 544, 848, 944, 1117, 1126
BstMWI GCNNNNNNNGC 1 cut(s) 1334
BstNI CCWGG 3 cut(s) 414, 1226, 1333
BstSCI CCNGG 6 cut(s) 202, 412, 1155, 1156, 1224, 1331
BstSFI CTRYAG 2 cut(s) 930, 1173
BstSLI GKGCMC 1 cut(s) 812
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 4 cut(s) 101, 916, 944, 1292
BstX2I RGATCY 2 cut(s) 397, 440
BstYI RGATCY 2 cut(s) 397, 440
BsuI GTATCC 2 cut(s) 714, 734
BsuRI GGCC 2 cut(s) 1075, 1229
BtgZI GCGATG 1 cut(s) 30
BtsCI GGATG 7 cut(s) 371, 667, 742, 814, 1103, 1193, 1264
BtsIMutI CAGTG 1 cut(s) 1018
Cac8I GCNNGC 2 cut(s) 9, 13
CfoI GCGC 1 cut(s) 130
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 2 cut(s) 141, 669
Cfr9I CCCGGG 1 cut(s) 1156
CspCI CAANNNNNGTGG 1 cut(s) 35
CviAII CATG 5 cut(s) 238, 379, 653, 902, 1309
DdeI CTNAG 5 cut(s) 255, 402, 625, 912, 1099
DpnI GATC 8 cut(s) 119, 399, 442, 546, 850, 946, 1119, 1128
DpnII GATC 8 cut(s) 117, 397, 440, 544, 848, 944, 1117, 1126
DraI TTTAAA 1 cut(s) 570
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
EciI GGCGGA 1 cut(s) 1423
Ecl136II GAGCTC 1 cut(s) 890
Eco130I CCWWGG 3 cut(s) 791, 1144, 1448
Eco147I AGGCCT 1 cut(s) 1075
Eco24I GRGCYC 1 cut(s) 892
Eco31I GGTCTC 2 cut(s) 183, 684
Eco47I GGWCC 2 cut(s) 141, 669
Eco53kI GAGCTC 1 cut(s) 890
Eco57I CTGAAG 1 cut(s) 534
Eco88I CYCGRG 1 cut(s) 1156
EcoICRI GAGCTC 1 cut(s) 890
EcoO109I RGGNCCY 1 cut(s) 669
EcoRI GAATTC 1 cut(s) 727
EcoRII CCWGG 3 cut(s) 412, 1224, 1331
EcoT14I CCWWGG 3 cut(s) 791, 1144, 1448
EcoT38I GRGCYC 1 cut(s) 892
ErhI CCWWGG 3 cut(s) 791, 1144, 1448
FaeI CATG 5 cut(s) 241, 382, 656, 905, 1312
FalI AAGNNNNNCTT 2 cut(s) 1312, 1344
FaqI GGGAC 2 cut(s) 198, 682
FatI CATG 5 cut(s) 237, 378, 652, 901, 1308
FblI GTMKAC 1 cut(s) 1176
Fnu4HI GCNGC 4 cut(s) 90, 930, 933, 1306
FokI GGATG 7 cut(s) 358, 674, 749, 801, 1090, 1180, 1271
FriOI GRGCYC 1 cut(s) 892
Fsp4HI GCNGC 4 cut(s) 90, 930, 933, 1306
FspBI CTAG 3 cut(s) 303, 1206, 1449
GlaI GCGC 1 cut(s) 129
GluI GCNGC 4 cut(s) 90, 930, 933, 1306
GsuI CTGGAG 1 cut(s) 1167
HaeIII GGCC 2 cut(s) 1075, 1229
HapII CCGG 4 cut(s) 167, 204, 279, 1157
HhaI GCGC 1 cut(s) 130
Hin1II CATG 5 cut(s) 241, 382, 656, 905, 1312
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HincII GTYRAC 3 cut(s) 451, 601, 1009
HindII GTYRAC 3 cut(s) 451, 601, 1009
HinfI GANTC 9 cut(s) 102, 230, 368, 388, 1016, 1033, 1169, 1274, 1280
HpaII CCGG 4 cut(s) 167, 204, 279, 1157
HphI GGTGA 3 cut(s) 841, 992, 1055
Hpy166II GTNNAC 6 cut(s) 451, 601, 810, 1009, 1177, 1346
Hpy188I TCNGA 4 cut(s) 733, 973, 1126, 1279
Hpy188III TCNNGA 5 cut(s) 136, 499, 512, 1085, 1184
Hpy8I GTNNAC 6 cut(s) 451, 601, 810, 1009, 1177, 1346
Hpy99I CGWCG 1 cut(s) 927
HpyAV CCTTC 3 cut(s) 171, 385, 680
HpyCH4III ACNGT 3 cut(s) 314, 1013, 1403
HpyCH4V TGCA 9 cut(s) 29, 332, 527, 607, 810, 905, 932, 1262, 1308
HpyF10VI GCNNNNNNNGC 1 cut(s) 1334
HpyF3I CTNAG 5 cut(s) 255, 402, 625, 912, 1099
Hsp92II CATG 5 cut(s) 241, 382, 656, 905, 1312
HspAI GCGC 1 cut(s) 128
KflI GGGWCCC 1 cut(s) 669
Kzo9I GATC 8 cut(s) 117, 397, 440, 544, 848, 944, 1117, 1126
LmnI GCTCC 7 cut(s) 4, 249, 472, 795, 887, 895, 1239
Lsp1109I GCAGC 4 cut(s) 101, 916, 944, 1292
LweI GCATC 5 cut(s) 216, 231, 944, 1112, 1249
MaeI CTAG 3 cut(s) 303, 1206, 1449
MaeIII GTNAC 2 cut(s) 1013, 1111
MalI GATC 8 cut(s) 119, 399, 442, 546, 850, 946, 1119, 1128
MboI GATC 8 cut(s) 117, 397, 440, 544, 848, 944, 1117, 1126
MboII GAAGA 7 cut(s) 353, 397, 527, 844, 1229, 1283, 1302
MfeI CAATTG 1 cut(s) 745
MflI RGATCY 2 cut(s) 397, 440
MhlI GDGCHC 2 cut(s) 812, 892
MluCI AATT 7 cut(s) 250, 506, 565, 727, 745, 820, 1365
MlyI GAGTC 4 cut(s) 224, 397, 1010, 1274
MroXI GAANNNNTTC 2 cut(s) 345, 648
MseI TTAA 4 cut(s) 561, 569, 774, 1053
MslI CAYNNNNRTG 1 cut(s) 900
MspI CCGG 4 cut(s) 167, 204, 279, 1157
MspR9I CCNGG 6 cut(s) 204, 414, 1157, 1158, 1226, 1333
MunI CAATTG 1 cut(s) 745
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 3 cut(s) 414, 1226, 1333
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 1334
NciI CCSGG 3 cut(s) 204, 1157, 1158
NdeII GATC 8 cut(s) 117, 397, 440, 544, 848, 944, 1117, 1126
NlaIII CATG 5 cut(s) 241, 382, 656, 905, 1312
NlaIV GGNNCC 2 cut(s) 670, 671
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 1013
PceI AGGCCT 1 cut(s) 1075
PctI GAATGC 1 cut(s) 529
PdmI GAANNNNTTC 2 cut(s) 345, 648
PfeI GAWTC 5 cut(s) 102, 368, 1033, 1169, 1274
PkrI GCNGC 4 cut(s) 91, 931, 934, 1307
PleI GAGTC 4 cut(s) 224, 396, 1010, 1274
PpsI GAGTC 4 cut(s) 224, 396, 1010, 1274
PpuMI RGGWCCY 1 cut(s) 669
Psp124BI GAGCTC 1 cut(s) 892
Psp5II RGGWCCY 1 cut(s) 669
Psp6I CCWGG 3 cut(s) 412, 1224, 1331
PspGI CCWGG 3 cut(s) 412, 1224, 1331
PspN4I GGNNCC 2 cut(s) 670, 671
PspPI GGNCC 2 cut(s) 141, 669
PspPPI RGGWCCY 1 cut(s) 669
PstI CTGCAG 1 cut(s) 934
PsuI RGATCY 2 cut(s) 397, 440
RseI CAYNNNNRTG 1 cut(s) 900
SacI GAGCTC 1 cut(s) 892
SaqAI TTAA 4 cut(s) 561, 569, 774, 1053
SatI GCNGC 4 cut(s) 90, 930, 933, 1306
Sau3AI GATC 8 cut(s) 117, 397, 440, 544, 848, 944, 1117, 1126
Sau96I GGNCC 2 cut(s) 141, 669
SchI GAGTC 4 cut(s) 224, 397, 1010, 1274
ScrFI CCNGG 6 cut(s) 204, 414, 1157, 1158, 1226, 1333
SduI GDGCHC 2 cut(s) 812, 892
SfaNI GCATC 5 cut(s) 216, 231, 944, 1112, 1249
SfcI CTRYAG 2 cut(s) 930, 1173
SgrAI CRCCGGYG 1 cut(s) 166
SinI GGWCC 2 cut(s) 141, 669
SmaI CCCGGG 1 cut(s) 1158
SmiI ATTTAAAT 1 cut(s) 570
SmiMI CAYNNNNRTG 1 cut(s) 900
Sse9I AATT 7 cut(s) 250, 506, 565, 727, 745, 820, 1365
SseBI AGGCCT 1 cut(s) 1075
SsiI CCGC 4 cut(s) 60, 110, 219, 1408
SspMI CTAG 3 cut(s) 303, 1206, 1449
SstI GAGCTC 1 cut(s) 892
StuI AGGCCT 1 cut(s) 1075
StyD4I CCNGG 6 cut(s) 202, 412, 1155, 1156, 1224, 1331
StyI CCWWGG 3 cut(s) 791, 1144, 1448
SwaI ATTTAAAT 1 cut(s) 570
TaaI ACNGT 3 cut(s) 314, 1013, 1403
TaqI TCGA 3 cut(s) 228, 922, 1380
TasI AATT 7 cut(s) 250, 506, 565, 727, 745, 820, 1365
TfiI GAWTC 5 cut(s) 102, 368, 1033, 1169, 1274
Tru1I TTAA 4 cut(s) 561, 569, 774, 1053
Tru9I TTAA 4 cut(s) 561, 569, 774, 1053
TscAI CASTG 1 cut(s) 1018
TseFI GTSAC 1 cut(s) 1013
TseI GCWGC 4 cut(s) 89, 929, 932, 1305
Tsp45I GTSAC 1 cut(s) 1013
TspDTI ATGAA 9 cut(s) 354, 360, 367, 599, 641, 945, 1182, 1230, 1284
TspGWI ACGGA 3 cut(s) 1096, 1252, 1331
TspMI CCCGGG 1 cut(s) 1156
TspRI CASTG 1 cut(s) 1018
VneI GTGCAC 1 cut(s) 808
VpaK11BI GGWCC 2 cut(s) 141, 669
XapI RAATTY 3 cut(s) 506, 565, 727
XmaI CCCGGG 1 cut(s) 1156
XmaJI CCTAGG 1 cut(s) 1448
XmiI GTMKAC 1 cut(s) 1176
XmnI GAANNNNTTC 2 cut(s) 345, 648
XspI CTAG 3 cut(s) 303, 1206, 1449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.