Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005331

Physical Location & Seq

Genomic Coordinates Forward (+)

385874 .. 394080

Gene Structure 8207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2613 bp

ATGGCGTCGCTCGCCTCGGTGATCTCCAGTAATCCCGGCCACGCGCTCTCCCCCAACATATTGTCTCACGACGCCAAGCCCAGGAAGATCTGCTACTCTCAATGCTCTACATTCTTTCTCCCTCCTCACCGCTCTCCCATTTGCAGGAAAAGGTCACTCAAAACCTGTATCTTTGCATCAGTCACAGATACTCCAGTAAATGCATATCCAGAAAAAGTTCAGCTTCCTAAGGGTGACTGTTGGTCCGTCCATAAATTTGGTGGCACCTGTGTGGGGAGTTCAGAAAGAATTAAGAATGTTGCAAAAATAATTCTTAGTGATGACTCAGAGAGGAAGATGGTAGTTGTCTCGGCAATGTCCAAGGTAACGGACATGATGTATGATCTTATCTACAAGGCTCAATCACGAGATGAGGCCTACATATCTGCATTAGATGCCGTTTTAGAAAAGCACAAATCTACAGCTCTTGATTTACTTGATGGGGATGATCTTAGTAGTTTCTTAGCACAATTGCATCACGACATCAGTAACCTGAAAGCGATGCTTCGTGCTATATACATTGCTGGTCATGCAACAGAATCGTTCACAGATTTTGTTGTAGGACATGGAGAGTTATGGTCCGCGCAAATGTTGTCATGCGTTATTAGAAAGAATGGGGTAGATTGCAATTGGATGGATACAAGGGAAGTCCTTATTGTAAATCCTACAAGTTCTAATCAAGTTGATCCTGATTTAAAGGAATCTGAAGACAGACTTGAGAAATGGTATTCCAAAAACCCATCAAAAACAATTGTAGCTACTGGCTTCATTGCTAGCACACCTCAAAATATTCCTACTACTTTGAAGAGAGATGGAAGTGACTTCTCTGCAGCAATCATGGGTGCCTTACTCAAGGCCGGTCAAGTCACAATTTGGACAGATGTTGATGGAGTCTATAGTGCAGACCCCAGAAAAGTCAGTGAGGCAGTGATTCTAAAGACTTTGTCTTATCAAGAAGCCTGGGAAATGTCTTATTTTGGGGCAAATGTTCTGCATCCACGCACTATCATCCCAGTGATGCAATATGACATTCCTATTATAATACGGAACGTTTTCAACCGTGCTGCACCTGGAACAAAAATTTGTCGCCCTACTGAGGATGAAACTGTTCAGGGTTTGGAGTCGTTTGTCAAAGGGTTTGCCACAATAGACAACTTGGCCCTTGTCAATGTGGAAGGAACTGGGATGGCTGGTGTTCCTGGTACAGCAAGTGATATATTCAGTGCCGTAAAGGATGTTGGGGCTAATGTTATTATGATATCTCAGGTTCAAGTCATTCCAAACTGTAGTATTTTGGCAGCAGTTGGCCAAAAAATGGCCAGTACTCCAGGAGTTAGTGCAACTCTTTTCAATGCACTGGCAAAGGCAAACATTAATGTACGTGCAATTGCTCAGGGTTGTACTGAGTACAATATTACTGTAGTGATAAAGCGGGAGGATTGTATTAGGGCTCTGAGAGCTGTCCATTCTAGATTCTATCTTTCAAGAACCACGATAGCAGTGGGCATCATCGGACCTGGTCTGATTGGTGCCACATTACTAGATCAATTAAGGGATCAGGCAGCTACCCTCAAGGAAGAGTTTAACATCGATTTGCGTGTTATGGGAATCACTGGCTCACAGACAATGCTTTTGAGTGAGGCGGGTGTTGACTTATCTAGATGGAGAGACCTCCAAAAAGAGAAAGGAGCTGTGGCAGATATGGAAAAGTTTGTGCAGCATGTACATGGGAATCATTTTATTCCAAATACTGTTTTGGTTGACTGCACAGCTGACTCTAGTATTGCAAGCCATTACTATGACTGGTTGCGGAAAGGAATTCACGTAGTCACTCCCAACAAAAAGGCCAATTCAGGGCCGCTTGATCAATATTTAAAATTACGAGCTCTTCAACGGCAATCATATACACATTACTTCTATGAAGCTACTGTTGGAGCTGGTCTGCCAATTATTAATACATTACAAGGTCTCCTTGAAACTGGAGACAAAATATTGCGTATTGAAGGCATCTTCAGTGGTACTCTGAGTTATATCTTCAACAATTTCACTGGAGGACGCACTTTTAGTGAGGTGGTGGCTGAAGCAAAGCAGGCAGGTTATACTGAGCCGGATCCAAGGGATGACCTATCTGGAACAGATGTTTGTAGAAAGGTGATAATTCTTGCTAGGGAATCTGGTCTTAAGCTGGAACTCTCTGACATCCCTGTTGAAAGCCTTGTGCCGGAACCGTTGAAGGATAGTGCATCAGCCGAAGAATTCATGCAAAAACTTCCACAATTTGATCAAGAGATGAGTAAGAAAAGACAGATAGCTGAGGATGCAGGAGGAGTCTTGAGATTCGTTGGGGTGGTTGACATGGTCAATCAGAAAGGGGAAGTGAAGCTGCAGACGTACAAGAATGATCATCCATTTGCTCAGCTTTCCGGGGCAGATAATATAATTGCGTTCACAACAACTAGATACAAAGCTCAACCCCTAATAATACGTGGACCTGGTGCTGGTGCTGAAGTCACTGCTGGTGGAGTCTTCAGTGACCTGTTGCGGCTTGCTTCATACCTTGGTGCCCCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004072 GO:0004412 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009090 GO:0009092 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016772 GO:0016774 GO:0019202 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

AA_kinase ACT ACT_7 Homoserine_dh NAD_binding_3

Protein Analysis

871

Amino Acids

94.99

Weight (kDa)

6.44

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	83 - 363	2.4e-43	Amino acid kinase family
ACT_9	PF22468	402 - 435	1.2e-07	ACT domain
ACT_7	PF13840	439 - 503	1.8e-10	ACT domain
ACT_9	PF22468	446 - 505	1.7e-21	ACT domain
ACT	PF01842	452 - 493	1.9e-06	ACT domain
NAD_binding_3	PF03447	518 - 654	5.6e-22	Homoserine dehydrogenase, NAD binding domain
Homoserine_dh	PF00742	662 - 860	6.7e-53	Homoserine dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31230 AT4G19710 AT4G19710
fragaria_vesca	FvH4_2g00800 FvH4_2g00800 FvH4_2g00800 FvH4_2g00800
malus_domestica	MD05G1003800.v1.1 MD10G1004700.v1.1
prunus_persica	Prupe.5G007500_v2.0.a1 Prupe.5G007500_v2.0.a1 Prupe.5G007500_v2.0.a1 Prupe.8G007000_v2.0.a1 Prupe.8G007000_v2.0.a1
pyrus_communis	pycom05g00330 pycom10g00370 pycom10g00380
rosa_chinensis	RchiOBHm_Chr6g0251231
rosa_laevigata	RLG00000015472
rosa_multiflora	Rmu_sc0001637.1_g000003 Rmu_sc0015396.1_g000003
rosa_roxburghii	Rroxscaffold_7G00216900
rosa_rugosa	Rorug05G0500900.1 Rorug05G0501000
rosa_samantha	Rh6BG001700 Rh6CG007400 Rh6DG007800
rosa_wichuraiana	Rw6G001010 Rw6G001120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1079
Acc36I	ACCTGC	1 cut(s)	2123
AccB1I	GGYRCC	4 cut(s)	263, 881, 1568, 2600
AccB7I	CCANNNNNTGG	1 cut(s)	1354
AccBSI	CCGCTC	1 cut(s)	132
AccII	CGCG	2 cut(s)	44, 623
AciI	CCGC	7 cut(s)	130, 621, 1471, 1682, 1849, 1898, 2581
AclI	AACGTT	1 cut(s)	1089
AclWI	GGATC	4 cut(s)	719, 1602, 2144, 2157
AcoI	YGGCCR	3 cut(s)	37, 1345, 1356
AcsI	RAATTY	4 cut(s)	254, 1119, 1857, 2294
AcuI	CTGAAG	5 cut(s)	765, 2035, 2139, 2551, 2565
AcyI	GRCGYC	2 cut(s)	5, 72
AfaI	GTAC	8 cut(s)	1243, 1363, 1419, 1441, 1448, 1764, 2059, 2432
AfiI	CCNNNNNNNGG	8 cut(s)	81, 144, 273, 1135, 1354, 1893, 2260, 2537
AflII	CTTAAG	1 cut(s)	2219
AhdI	GACNNNNNGTC	1 cut(s)	241
AjnI	CCWGG	7 cut(s)	80, 998, 1108, 1237, 1366, 1555, 2530
AjuI	GAANNNNNNNTTGG	2 cut(s)	1953, 1985
AleI	CACNNNNGTG	1 cut(s)	269
Alw21I	GWGCWC	1 cut(s)	1927
Alw26I	GTCTC	5 cut(s)	69, 352, 1701, 2012, 2016
AlwI	GGATC	4 cut(s)	719, 1602, 2144, 2157
AoxI	GGCC	8 cut(s)	37, 414, 894, 1197, 1345, 1356, 1884, 1895
ApeKI	GCWGC	6 cut(s)	869, 1103, 1337, 1601, 1756, 2422
ApoI	RAATTY	4 cut(s)	254, 1119, 1857, 2294
ArsI	GACNNNNNNTTYG	2 cut(s)	1654, 1686
AseI	ATTAAT	2 cut(s)	1413, 1992
Asp700I	GAANNNNTTC	3 cut(s)	216, 1091, 1146
AspLEI	GCGC	2 cut(s)	46, 625
AspS9I	GGNCC	6 cut(s)	243, 618, 1198, 1553, 1895, 2528
AsuC2I	CCSGG	2 cut(s)	36, 2464
AsuHPI	GGTGA	4 cut(s)	31, 119, 245, 2203
AsuNHI	GCTAGC	1 cut(s)	812
AvaII	GGWCC	4 cut(s)	243, 618, 1553, 2528
AxyI	CCTNAGG	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	2605
BaeI	ACNNNNGTAYC	2 cut(s)	180, 213
BalI	TGGCCA	2 cut(s)	1347, 1358
BamHI	GGATCC	1 cut(s)	2149
BanI	GGYRCC	4 cut(s)	263, 881, 1568, 2600
BanII	GRGCYC	2 cut(s)	1492, 1927
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
BauI	CACGAG	1 cut(s)	405
BbsI	GAAGAC	2 cut(s)	753, 2557
Bbv12I	GWGCWC	1 cut(s)	1927
BbvCI	CCTCAGC	1 cut(s)	2352
BbvI	GCAGC	6 cut(s)	881, 1090, 1349, 1613, 1768, 2409
BccI	CCATC	8 cut(s)	331, 473, 667, 787, 845, 920, 1219, 1695
BceAI	ACGGC	3 cut(s)	422, 1250, 1949
BcgI	CGANNNNNNTGC	2 cut(s)	561, 595
BciT130I	CCWGG	7 cut(s)	82, 1000, 1110, 1239, 1368, 1557, 2532
BciVI	GTATCC	1 cut(s)	670
BclI	TGATCA	3 cut(s)	1903, 2320, 2440
BcnI	CCSGG	2 cut(s)	36, 2464
BcoDI	GTCTC	5 cut(s)	69, 352, 1701, 2012, 2016
BfaI	CTAG	7 cut(s)	813, 1509, 1580, 1698, 1818, 2205, 2496
BfmI	CTRYAG	6 cut(s)	459, 867, 934, 1324, 1458, 2423
BfrI	CTTAAG	1 cut(s)	2219
BfuAI	ACCTGC	1 cut(s)	2123
BfuI	GTATCC	1 cut(s)	670
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	8 cut(s)	870, 1104, 1338, 1602, 1757, 1898, 2423, 2582
BlpI	GCTNAGC	1 cut(s)	2454
BlsI	GCNGC	8 cut(s)	871, 1105, 1339, 1603, 1758, 1899, 2424, 2583
BmcAI	AGTACT	1 cut(s)	1363
Bme1390I	CCNGG	9 cut(s)	36, 82, 1000, 1110, 1239, 1368, 1557, 2464, 2532
Bme18I	GGWCC	4 cut(s)	243, 618, 1553, 2528
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmgT120I	GGNCC	6 cut(s)	243, 618, 1198, 1553, 1895, 2528
BmiI	GGNNCC	6 cut(s)	265, 883, 1570, 2151, 2265, 2602
BmrFI	CCNGG	9 cut(s)	36, 82, 1000, 1110, 1239, 1368, 1557, 2464, 2532
BmrI	ACTGGG	2 cut(s)	1046, 1230
BmtI	GCTAGC	1 cut(s)	816
BmuI	ACTGGG	2 cut(s)	1046, 1230
BpiI	GAAGAC	2 cut(s)	753, 2557
BpmI	CTGGAG	5 cut(s)	10, 177, 1350, 2040, 2109
Bpu10I	CCTNAGC	2 cut(s)	1431, 2352
Bpu1102I	GCTNAGC	1 cut(s)	2454
BpuEI	CTTGAG	4 cut(s)	776, 875, 1595, 2392
BpuMI	CCSGG	2 cut(s)	36, 2464
Bsa29I	ATCGAT	1 cut(s)	1629
BsaAI	YACGTR	3 cut(s)	1421, 1864, 2525
BsaHI	GRCGYC	2 cut(s)	5, 72
BsaI	GGTCTC	2 cut(s)	1701, 2012
BsaJI	CCNNGG	7 cut(s)	15, 80, 360, 999, 2153, 2463, 2596
BsaXI	ACNNNNNCTCC	6 cut(s)	32, 62, 175, 205, 1992, 2022
Bsc4I	CCNNNNNNNGG	8 cut(s)	81, 144, 273, 1135, 1354, 1893, 2260, 2537
Bse118I	RCCGGY	1 cut(s)	896
Bse21I	CCTNAGG	1 cut(s)	228
Bse3DI	GCAATG	3 cut(s)	360, 558, 807
BseBI	CCWGG	7 cut(s)	82, 1000, 1110, 1239, 1368, 1557, 2532
BseCI	ATCGAT	1 cut(s)	1629
BseDI	CCNNGG	7 cut(s)	15, 80, 360, 999, 2153, 2463, 2596
BseLI	CCNNNNNNNGG	8 cut(s)	81, 144, 273, 1135, 1354, 1893, 2260, 2537
BseMI	GCAATG	3 cut(s)	360, 558, 807
BseRI	GAGGAG	2 cut(s)	114, 2379
BseSI	GKGCMC	1 cut(s)	2605
BseXI	GCAGC	6 cut(s)	881, 1090, 1349, 1613, 1768, 2409
BsgI	GTGCAG	4 cut(s)	960, 1089, 1775, 1789
Bsh1236I	CGCG	2 cut(s)	44, 623
BshFI	GGCC	8 cut(s)	39, 416, 896, 1199, 1347, 1358, 1886, 1897
BshNI	GGYRCC	4 cut(s)	263, 881, 1568, 2600
BshVI	ATCGAT	1 cut(s)	1629
BsiHKAI	GWGCWC	1 cut(s)	1927
BsiSI	CCGG	5 cut(s)	36, 897, 2147, 2261, 2463
BslI	CCNNNNNNNGG	8 cut(s)	81, 144, 273, 1135, 1354, 1893, 2260, 2537
BsmAI	GTCTC	5 cut(s)	69, 352, 1701, 2012, 2016
BsnI	GGCC	8 cut(s)	39, 416, 896, 1199, 1347, 1358, 1886, 1897
Bso31I	GGTCTC	2 cut(s)	1701, 2012
Bsp1286I	GDGCHC	3 cut(s)	1492, 1927, 2605
Bsp1407I	TGTACA	1 cut(s)	1762
Bsp1720I	GCTNAGC	1 cut(s)	2454
BspACI	CCGC	7 cut(s)	130, 621, 1471, 1682, 1849, 1898, 2581
BspANI	GGCC	8 cut(s)	39, 416, 896, 1199, 1347, 1358, 1886, 1897
BspDI	ATCGAT	1 cut(s)	1629
BspFNI	CGCG	2 cut(s)	44, 623
BspLI	GGNNCC	6 cut(s)	265, 883, 1570, 2151, 2265, 2602
BspMAI	CTGCAG	2 cut(s)	871, 2427
BspMI	ACCTGC	1 cut(s)	2123
BspOI	GCTAGC	1 cut(s)	816
BspPI	GGATC	4 cut(s)	719, 1602, 2144, 2157
BspQI	GCTCTTC	1 cut(s)	1932
BspT107I	GGYRCC	4 cut(s)	263, 881, 1568, 2600
BspTI	CTTAAG	1 cut(s)	2219
BspTNI	GGTCTC	2 cut(s)	1701, 2012
BsrBI	CCGCTC	1 cut(s)	132
BsrDI	GCAATG	3 cut(s)	360, 558, 807
BsrFI	RCCGGY	1 cut(s)	896
BsrGI	TGTACA	1 cut(s)	1762
BssAI	RCCGGY	1 cut(s)	896
BssECI	CCNNGG	7 cut(s)	15, 80, 360, 999, 2153, 2463, 2596
BssNI	GRCGYC	2 cut(s)	5, 72
BssSI	CACGAG	1 cut(s)	405
BssT1I	CCWWGG	3 cut(s)	360, 2153, 2596
Bst2BI	CACGAG	1 cut(s)	405
Bst2UI	CCWGG	7 cut(s)	82, 1000, 1110, 1239, 1368, 1557, 2532
Bst4CI	ACNGT	8 cut(s)	239, 1100, 1147, 1325, 1459, 1792, 1969, 2268
Bst6I	CTCTTC	3 cut(s)	839, 1611, 1932
BstACI	GRCGYC	2 cut(s)	5, 72
BstAFI	CTTAAG	1 cut(s)	2219
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstAUI	TGTACA	1 cut(s)	1762
BstBAI	YACGTR	3 cut(s)	1421, 1864, 2525
BstC8I	GCNNGC	5 cut(s)	12, 814, 1828, 2130, 2586
BstFNI	CGCG	2 cut(s)	44, 623
BstHHI	GCGC	2 cut(s)	46, 625
BstMAI	GTCTC	5 cut(s)	69, 352, 1701, 2012, 2016
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 434, 569, 1496, 2129, 2357
BstNI	CCWGG	7 cut(s)	82, 1000, 1110, 1239, 1368, 1557, 2532
BstNSI	RCATGY	1 cut(s)	1763
BstSCI	CCNGG	9 cut(s)	34, 80, 998, 1108, 1237, 1366, 1555, 2462, 2530
BstSFI	CTRYAG	6 cut(s)	459, 867, 934, 1324, 1458, 2423
BstSLI	GKGCMC	1 cut(s)	2605
BstUI	CGCG	2 cut(s)	44, 623
BstV1I	GCAGC	6 cut(s)	881, 1090, 1349, 1613, 1768, 2409
BstV2I	GAAGAC	2 cut(s)	753, 2557
BstX2I	RGATCY	2 cut(s)	87, 2149
BstXI	CCANNNNNNTGG	1 cut(s)	257
BstYI	RGATCY	2 cut(s)	87, 2149
Bsu15I	ATCGAT	1 cut(s)	1629
Bsu36I	CCTNAGG	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	670
BsuRI	GGCC	8 cut(s)	39, 416, 896, 1199, 1347, 1358, 1886, 1897
BsuTUI	ATCGAT	1 cut(s)	1629
BtgZI	GCGATG	1 cut(s)	554
BtsI	GCAGTG	3 cut(s)	972, 1545, 2550
BveI	ACCTGC	1 cut(s)	2123
Cac8I	GCNNGC	5 cut(s)	12, 814, 1828, 2130, 2586
CfoI	GCGC	2 cut(s)	46, 625
Cfr10I	RCCGGY	1 cut(s)	896
Cfr13I	GGNCC	6 cut(s)	243, 618, 1198, 1553, 1895, 2528
ClaI	ATCGAT	1 cut(s)	1629
CseI	GACGC	2 cut(s)	80, 2103
CsiI	ACCWGGT	2 cut(s)	1555, 2530
Csp6I	GTAC	8 cut(s)	1242, 1362, 1418, 1440, 1447, 1763, 2058, 2431
CviAII	CATG	9 cut(s)	373, 569, 605, 636, 877, 1760, 1766, 2299, 2395
CviQI	GTAC	8 cut(s)	1242, 1362, 1418, 1440, 1447, 1763, 2058, 2431
DraI	TTTAAA	2 cut(s)	735, 1914
DriI	GACNNNNNGTC	1 cut(s)	241
EaeI	YGGCCR	3 cut(s)	37, 1345, 1356
Eam1104I	CTCTTC	3 cut(s)	839, 1611, 1932
Eam1105I	GACNNNNNGTC	1 cut(s)	241
EarI	CTCTTC	3 cut(s)	839, 1611, 1932
Ecl136II	GAGCTC	1 cut(s)	1925
Eco130I	CCWWGG	3 cut(s)	360, 2153, 2596
Eco147I	AGGCCT	1 cut(s)	416
Eco24I	GRGCYC	2 cut(s)	1492, 1927
Eco31I	GGTCTC	2 cut(s)	1701, 2012
Eco32I	GATATC	1 cut(s)	1299
Eco47I	GGWCC	4 cut(s)	243, 618, 1553, 2528
Eco53kI	GAGCTC	1 cut(s)	1925
Eco57I	CTGAAG	5 cut(s)	765, 2035, 2139, 2551, 2565
Eco81I	CCTNAGG	1 cut(s)	228
EcoICRI	GAGCTC	1 cut(s)	1925
EcoRI	GAATTC	2 cut(s)	1857, 2294
EcoRII	CCWGG	7 cut(s)	80, 998, 1108, 1237, 1366, 1555, 2530
EcoRV	GATATC	1 cut(s)	1299
EcoT14I	CCWWGG	3 cut(s)	360, 2153, 2596
EcoT22I	ATGCAT	1 cut(s)	205
EcoT38I	GRGCYC	2 cut(s)	1492, 1927
ErhI	CCWWGG	3 cut(s)	360, 2153, 2596
FaeI	CATG	9 cut(s)	376, 572, 608, 639, 880, 1763, 1769, 2302, 2398
FalI	AAGNNNNNCTT	8 cut(s)	207, 239, 528, 560, 738, 770, 1995, 2027
FatI	CATG	9 cut(s)	372, 568, 604, 635, 876, 1759, 1765, 2298, 2394
FauI	CCCGC	2 cut(s)	1464, 1675
FbaI	TGATCA	3 cut(s)	1903, 2320, 2440
Fnu4HI	GCNGC	8 cut(s)	870, 1104, 1338, 1602, 1757, 1898, 2423, 2582
FriOI	GRGCYC	2 cut(s)	1492, 1927
Fsp4HI	GCNGC	8 cut(s)	870, 1104, 1338, 1602, 1757, 1898, 2423, 2582
FspBI	CTAG	7 cut(s)	813, 1509, 1580, 1698, 1818, 2205, 2496
GlaI	GCGC	2 cut(s)	45, 624
GluI	GCNGC	8 cut(s)	870, 1104, 1338, 1602, 1757, 1898, 2423, 2582
GsuI	CTGGAG	5 cut(s)	10, 177, 1350, 2040, 2109
HaeIII	GGCC	8 cut(s)	39, 416, 896, 1199, 1347, 1358, 1886, 1897
HapII	CCGG	5 cut(s)	36, 897, 2147, 2261, 2463
HgaI	GACGC	2 cut(s)	80, 2103
HhaI	GCGC	2 cut(s)	46, 625
Hin1I	GRCGYC	2 cut(s)	5, 72
Hin1II	CATG	9 cut(s)	376, 572, 608, 639, 880, 1763, 1769, 2302, 2398
Hin6I	GCGC	2 cut(s)	44, 623
HinP1I	GCGC	2 cut(s)	44, 623
HincII	GTYRAC	3 cut(s)	1690, 1801, 2392
HindII	GTYRAC	3 cut(s)	1690, 1801, 2392
HpaII	CCGG	5 cut(s)	36, 897, 2147, 2261, 2463
HphI	GGTGA	4 cut(s)	31, 119, 245, 2203
Hpy166II	GTNNAC	6 cut(s)	585, 1690, 1801, 2392, 2487, 2528
Hpy188I	TCNGA	9 cut(s)	283, 328, 745, 1494, 1553, 1563, 2064, 2236, 2406
Hpy8I	GTNNAC	6 cut(s)	585, 1690, 1801, 2392, 2487, 2528
Hpy99I	CGWCG	2 cut(s)	10, 74
HpyAV	CCTTC	3 cut(s)	1208, 2036, 2266
HpyCH4III	ACNGT	8 cut(s)	239, 1100, 1147, 1325, 1459, 1792, 1969, 2268
HpyCH4IV	ACGT	5 cut(s)	1089, 1420, 1863, 2429, 2524
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 434, 569, 1496, 2129, 2357
HpySE526I	ACGT	5 cut(s)	1089, 1420, 1863, 2429, 2524
Hsp92I	GRCGYC	2 cut(s)	5, 72
Hsp92II	CATG	9 cut(s)	376, 572, 608, 639, 880, 1763, 1769, 2302, 2398
HspAI	GCGC	2 cut(s)	44, 623
Ksp22I	TGATCA	3 cut(s)	1903, 2320, 2440
LguI	GCTCTTC	1 cut(s)	1932
LmnI	GCTCC	2 cut(s)	1727, 1973
Lsp1109I	GCAGC	6 cut(s)	881, 1090, 1349, 1613, 1768, 2409
MabI	ACCWGGT	2 cut(s)	1555, 2530
MaeI	CTAG	7 cut(s)	813, 1509, 1580, 1698, 1818, 2205, 2496
MaeII	ACGT	5 cut(s)	1089, 1420, 1863, 2429, 2524
MbiI	CCGCTC	1 cut(s)	132
MfeI	CAATTG	4 cut(s)	509, 667, 789, 1425
MflI	RGATCY	2 cut(s)	87, 2149
MhlI	GDGCHC	3 cut(s)	1492, 1927, 2605
MlsI	TGGCCA	2 cut(s)	1347, 1358
MluNI	TGGCCA	2 cut(s)	1347, 1358
MlyI	GAGTC	6 cut(s)	317, 939, 1169, 1808, 2376, 2571
MmeI	TCCRAC	1 cut(s)	1951
Mox20I	TGGCCA	2 cut(s)	1347, 1358
Mph1103I	ATGCAT	1 cut(s)	205
MroXI	GAANNNNTTC	3 cut(s)	216, 1091, 1146
MscI	TGGCCA	2 cut(s)	1347, 1358
MseI	TTAA	8 cut(s)	291, 734, 1413, 1589, 1623, 1913, 1992, 2220
MslI	CAYNNNNRTG	4 cut(s)	269, 1052, 1764, 1836
Msp20I	TGGCCA	2 cut(s)	1347, 1358
MspA1I	CMGCKG	1 cut(s)	1811
MspCI	CTTAAG	1 cut(s)	2219
MspI	CCGG	5 cut(s)	36, 897, 2147, 2261, 2463
MspR9I	CCNGG	9 cut(s)	36, 82, 1000, 1110, 1239, 1368, 1557, 2464, 2532
MunI	CAATTG	4 cut(s)	509, 667, 789, 1425
MvaI	CCWGG	7 cut(s)	82, 1000, 1110, 1239, 1368, 1557, 2532
MvnI	CGCG	2 cut(s)	44, 623
MwoI	GCNNNNNNNGC	6 cut(s)	11, 434, 569, 1496, 2129, 2357
NciI	CCSGG	2 cut(s)	36, 2464
NheI	GCTAGC	1 cut(s)	812
NlaIII	CATG	9 cut(s)	376, 572, 608, 639, 880, 1763, 1769, 2302, 2398
NlaIV	GGNNCC	6 cut(s)	265, 883, 1570, 2151, 2265, 2602
NmeAIII	GCCGAG	1 cut(s)	329
NmuCI	GTSAC	8 cut(s)	153, 181, 233, 857, 904, 1867, 2548, 2570
NsiI	ATGCAT	1 cut(s)	205
NspI	RCATGY	1 cut(s)	1763
OliI	CACNNNNGTG	1 cut(s)	269
PceI	AGGCCT	1 cut(s)	416
PciSI	GCTCTTC	1 cut(s)	1932
PdmI	GAANNNNTTC	3 cut(s)	216, 1091, 1146
PfeI	GAWTC	8 cut(s)	578, 740, 970, 1512, 1647, 1771, 2210, 2376
PflFI	GACNNNGTC	3 cut(s)	982, 1557, 2396
PflMI	CCANNNNNTGG	1 cut(s)	1354
PfoI	TCCNGGA	1 cut(s)	1366
PkrI	GCNGC	8 cut(s)	871, 1105, 1339, 1603, 1758, 1899, 2424, 2583
PleI	GAGTC	6 cut(s)	317, 938, 1168, 1808, 2375, 2570
PpsI	GAGTC	6 cut(s)	317, 938, 1168, 1808, 2375, 2570
Ppu21I	YACGTR	3 cut(s)	1421, 1864, 2525
PshBI	ATTAAT	2 cut(s)	1413, 1992
PsiI	TTATAA	1 cut(s)	1079
Psp124BI	GAGCTC	1 cut(s)	1927
Psp1406I	AACGTT	1 cut(s)	1089
Psp6I	CCWGG	7 cut(s)	80, 998, 1108, 1237, 1366, 1555, 2530
PspGI	CCWGG	7 cut(s)	80, 998, 1108, 1237, 1366, 1555, 2530
PspN4I	GGNNCC	6 cut(s)	265, 883, 1570, 2151, 2265, 2602
PspPI	GGNCC	6 cut(s)	243, 618, 1198, 1553, 1895, 2528
PstI	CTGCAG	2 cut(s)	871, 2427
PsuI	RGATCY	2 cut(s)	87, 2149
PsyI	GACNNNGTC	3 cut(s)	982, 1557, 2396
PvuII	CAGCTG	1 cut(s)	1811
RsaI	GTAC	8 cut(s)	1243, 1363, 1419, 1441, 1448, 1764, 2059, 2432
RsaNI	GTAC	8 cut(s)	1242, 1362, 1418, 1440, 1447, 1763, 2058, 2431
RseI	CAYNNNNRTG	4 cut(s)	269, 1052, 1764, 1836
SacI	GAGCTC	1 cut(s)	1927
SapI	GCTCTTC	1 cut(s)	1932
SaqAI	TTAA	8 cut(s)	291, 734, 1413, 1589, 1623, 1913, 1992, 2220
SatI	GCNGC	8 cut(s)	870, 1104, 1338, 1602, 1757, 1898, 2423, 2582
Sau96I	GGNCC	6 cut(s)	243, 618, 1198, 1553, 1895, 2528
ScaI	AGTACT	1 cut(s)	1363
SchI	GAGTC	6 cut(s)	317, 939, 1169, 1808, 2376, 2571
ScrFI	CCNGG	9 cut(s)	36, 82, 1000, 1110, 1239, 1368, 1557, 2464, 2532
SduI	GDGCHC	3 cut(s)	1492, 1927, 2605
SexAI	ACCWGGT	2 cut(s)	1555, 2530
SfcI	CTRYAG	6 cut(s)	459, 867, 934, 1324, 1458, 2423
SinI	GGWCC	4 cut(s)	243, 618, 1553, 2528
SmiMI	CAYNNNNRTG	4 cut(s)	269, 1052, 1764, 1836
SmlI	CTYRAG	5 cut(s)	755, 890, 1610, 2219, 2371
SmoI	CTYRAG	5 cut(s)	755, 890, 1610, 2219, 2371
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	7 cut(s)	130, 621, 1471, 1682, 1849, 1898, 2581
SspI	AATATT	4 cut(s)	829, 1453, 1910, 2031
SspMI	CTAG	7 cut(s)	813, 1509, 1580, 1698, 1818, 2205, 2496
SstI	GAGCTC	1 cut(s)	1927
StuI	AGGCCT	1 cut(s)	416
StyD4I	CCNGG	9 cut(s)	34, 80, 998, 1108, 1237, 1366, 1555, 2462, 2530
StyI	CCWWGG	3 cut(s)	360, 2153, 2596
TaaI	ACNGT	8 cut(s)	239, 1100, 1147, 1325, 1459, 1792, 1969, 2268
TaiI	ACGT	5 cut(s)	1092, 1423, 1866, 2432, 2527
TaqI	TCGA	1 cut(s)	1629
TatI	WGTACW	4 cut(s)	1361, 1439, 1446, 1762
TauI	GCSGC	2 cut(s)	1900, 2584
TfiI	GAWTC	8 cut(s)	578, 740, 970, 1512, 1647, 1771, 2210, 2376
Tru1I	TTAA	8 cut(s)	291, 734, 1413, 1589, 1623, 1913, 1992, 2220
Tru9I	TTAA	8 cut(s)	291, 734, 1413, 1589, 1623, 1913, 1992, 2220
TseFI	GTSAC	8 cut(s)	153, 181, 233, 857, 904, 1867, 2548, 2570
TseI	GCWGC	6 cut(s)	869, 1103, 1337, 1601, 1756, 2422
Tsp45I	GTSAC	8 cut(s)	153, 181, 233, 857, 904, 1867, 2548, 2570
TspDTI	ATGAA	5 cut(s)	796, 1155, 1974, 2287, 2580
TspGWI	ACGGA	3 cut(s)	235, 383, 1099
Tth111I	GACNNNGTC	3 cut(s)	982, 1557, 2396
Van91I	CCANNNNNTGG	1 cut(s)	1354
Vha464I	CTTAAG	1 cut(s)	2219
VpaK11BI	GGWCC	4 cut(s)	243, 618, 1553, 2528
VspI	ATTAAT	2 cut(s)	1413, 1992
XapI	RAATTY	4 cut(s)	254, 1119, 1857, 2294
XbaI	TCTAGA	2 cut(s)	1508, 1697
XceI	RCATGY	1 cut(s)	1763
XcmI	CCANNNNNNNNNTGG	2 cut(s)	257, 1537
XmnI	GAANNNNTTC	3 cut(s)	216, 1091, 1146
XspI	CTAG	7 cut(s)	813, 1509, 1580, 1698, 1818, 2205, 2496
ZrmI	AGTACT	1 cut(s)	1363
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.