Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005331

Physical Location & Seq

Genomic Coordinates Forward (+)

68242865 .. 68245012

Gene Structure 2148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0501000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGGACAAGATGTGCCTCAAACTCTTTTATCCACTTGTGGTGCTTTTGCTGCACATGAGCCCCCTTGGATTTGTTTCTGGACTTGGGCGTGGGGCTACTAATATCAGGTCATGCATAGAGAAGGAAAGGCAGGCTCTCCTTGCAGTAAAACAAGGTCTCGTGGGCAATCCTGTAGTTTCTTCATGGGGAAGCAACGCGACAACAGATTGTTGCAAATGGAAAGGAGTCTCTTGTAGCAAACAAACAGGTCATGTTACTAAACTTGATCTTAATTCCGAGTCCCAGCTACGGCCAGATTTACCTCAAGGTAAGATTAGTCCTAAACTTTTTGAGTTGCAGCATTTGGAATATTTGGACCTCAGTTACAACAACTTCAGTCATAGCCAAATTCCGAAGTCTATTGGTTCTCTAAGCAATTTAAAATTTCTCAGCCTCTATCGCTGTGAGTTTGTGGGTGAAGTACCATATCAGCTTGGAAACCTTACACAGTTGCAATTTATTGTTCTTGACTTCAATGACTTTACTAATCCAAAAAACCTCAATTGGCTCCCTCATCTTTCTTCTTTAACACACCTGAACCTAGCTTGGATGAATCTCAGTAATGTTTTAGATTGGGCAAAAGTAGTTGATAAGCTCCCTAAACTACAACGGTTGAGATTATCGGGATGTGATCTTCCTATTCCAATTCTTTCATCTCTTTCTCATATAAACACTTCTAAATCTCTTTCTTCAGTTGATCTCTCTGAAAACCATCTCACCTTTTCAATATTCCATTGGTTGTCAACCTACAATACAAGCCTTGTTTCCGTTGACCTTTCTCGCAACAACTTAAGTGGTTCAATTCCTGATGTTTTAGGCAACCTGAGTTCTCTCCTGTATCTAAATCTTGCTTATAACTCAATAGAAGGACAACTCCCACAAAACATTGGCCAGTTATGTAGTCTGCAAGGATTGGACGTTTCAGGAAATAATCACAGTGGAGAGTTTTCTGAGTTTATTCAAGGATTATTTGGCTGTGCTTGGAACTCATTAACATCATTATATCTCTCTGGCAATCAGCTGACTGGAAGAATACCTGAAAGAATAGGTTCATTGTCCAACTTGCATTCTTTGGATGTTAGTATGAACTCTTTGACAGGAGTGATTACGGAAGCTCATTTCTCAAACCTCTCCAAACTGCAAGTTTTGGATTTATCTTCCAATTCACTAACCTTGAACATTCGTTCTGATTGGCTTCCTCCTTTTCAACTTGTCATAATAAGATTAAGGTCTTGCAAAATCGGGCCATATTTTCCAAAATGGCTTCAAACATCTCAGAAAAGCTTTTACGAGCTTGATCTTTCGGATGCTGGAATTTCTGATATCATTCCAAAATGGTTTCAAGATAACTTTATGAAACTCTCTGACGAAGTGCGACATCGTGGTTTAAATTTGAGTTCAAACCAATTGGAAGGGCCAATTCACTCGCTACCATCAGATGTGGCATATGTGGATCTATCGAGTAATAAACTTTCAGGGAGGATCTCTTTCTTGTGTGCAAGCAAAATTAGGAATTTAACAGTTCTTGATCTATCAAGCAATTCTTTCTCCGGAGAACTTCCAAATTGTTGGAAGCATTTAGAAAATATAGTCATTCTTGACTTGAGTAACAATGCTTTTTCTGGAAAAATTCCTACTTCAATTGGTTCCCTAGCTTTTCTTGAAACATTGAAGCTTAGCAAGAACAATTTTGCGGGAGAATTGCCTTCATCCTTGAAGAATTATACAAACTTAAAAGTTTTTGATATTGGAGAAAATAGGATCACAGGAATGATACCGGAATGGATAGCGATTAGCTTTTCACAGTTGGCTATCCTCATTCTTCGATCTAATCAATTAAGTGGAAGCCTGCCTTTGGAATTATGCCATCTAAAAGACATTCAACTTTTGGATTTGTCTAGGAACTGCTTCTCTGGTTCTATACCTCAATGCCTGAACAATCTGACTACTTTGGCTCAACAAGGAAGTTCAAGCTCAAGCATCACACACCATAGAGTTACTGTTGGAGAATACGAAGATGATGCATCTTTAATATGGAAAGGAAGAATGTCCGAGTACAAAAGCACATTGGGACTTGTAAAGAGCATTATTTCTCAAGCAACAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004072 GO:0004412 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009090 GO:0009092 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016772 GO:0016774 GO:0019202 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

AA_kinase ACT ACT_7 Homoserine_dh NAD_binding_3

Protein Analysis

715

Amino Acids

79.2

Weight (kDa)

7.0

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	41 - 79	5.2e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	109 - 220	7.8e-11	Leucine-rich repeat region
LRR_8	PF13855	266 - 324	2.6e-07	Leucine rich repeat
LRR_14	PF23598	282 - 373	7.8e-07	Leucine-rich repeat region
LRR_8	PF13855	343 - 403	9.9e-08	Leucine rich repeat
LRR_4	PF12799	343 - 379	7.7e-06	Leucine Rich repeats (2 copies)
LRR_14	PF23598	513 - 647	7.3e-08	Leucine-rich repeat region
LRR_8	PF13855	517 - 577	9.5e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31230 AT4G19710 AT4G19710
fragaria_vesca	FvH4_2g00800 FvH4_2g00800 FvH4_2g00800 FvH4_2g00800
malus_domestica	MD05G1003800.v1.1 MD10G1004700.v1.1
prunus_persica	Prupe.5G007500_v2.0.a1 Prupe.5G007500_v2.0.a1 Prupe.5G007500_v2.0.a1 Prupe.8G007000_v2.0.a1 Prupe.8G007000_v2.0.a1
pyrus_communis	pycom05g00330 pycom10g00370 pycom10g00380
rosa_chinensis	RchiOBHm_Chr6g0251231
rosa_laevigata	RLG00000015472
rosa_multiflora	Rmu_sc0001637.1_g000003 Rmu_sc0015396.1_g000003
rosa_roxburghii	Rroxscaffold_7G00216900
rosa_rugosa	Rorug05G0500900.1 Rorug05G0501000
rosa_samantha	Rh6BG001700 Rh6CG007400 Rh6DG007800
rosa_wichuraiana	Rw6G001010 Rw6G001120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	894
AccII	CGCG	1 cut(s)	197
AccIII	TCCGGA	1 cut(s)	1589
AciI	CCGC	1 cut(s)	1733
AclWI	GGATC	3 cut(s)	1500, 1529, 1808
AcoI	YGGCCR	2 cut(s)	290, 928
AcsI	RAATTY	6 cut(s)	387, 422, 1353, 1429, 1552, 1668
AcuI	CTGAAG	2 cut(s)	358, 714
AfaI	GTAC	2 cut(s)	462, 2096
AfiI	CCNNNNNNNGG	2 cut(s)	288, 1894
AflII	CTTAAG	1 cut(s)	829
Alw26I	GTCTC	2 cut(s)	161, 232
AlwI	GGATC	3 cut(s)	1500, 1529, 1808
Aor13HI	TCCGGA	1 cut(s)	1589
AoxI	GGCC	4 cut(s)	290, 928, 1283, 1454
ApeKI	GCWGC	2 cut(s)	49, 337
ApoI	RAATTY	6 cut(s)	387, 422, 1353, 1429, 1552, 1668
Asp700I	GAANNNNTTC	2 cut(s)	1087, 1946
AspS9I	GGNCC	3 cut(s)	355, 1283, 1454
AsuHPI	GGTGA	2 cut(s)	467, 748
AvaII	GGWCC	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	930
BanII	GRGCYC	1 cut(s)	62
BauI	CACGAG	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	36, 349
BccI	CCATC	3 cut(s)	759, 1480, 1914
BceAI	ACGGC	1 cut(s)	305
BcgI	CGANNNNNNTGC	2 cut(s)	2042, 2076
BcoDI	GTCTC	2 cut(s)	161, 232
BfaI	CTAG	3 cut(s)	581, 1691, 1938
BfmI	CTRYAG	1 cut(s)	171
BfrI	CTTAAG	1 cut(s)	829
BisI	GCNGC	2 cut(s)	50, 338
BlpI	GCTNAGC	1 cut(s)	1715
BlsI	GCNGC	2 cut(s)	51, 339
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	3 cut(s)	355, 1283, 1454
BmiI	GGNNCC	2 cut(s)	548, 1687
BmsI	GCATC	4 cut(s)	1336, 2028, 2050, 2072
Bpu1102I	GCTNAGC	1 cut(s)	1715
BpuEI	CTTGAG	4 cut(s)	288, 1663, 1999, 2118
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	64
BsaWI	WCCGGW	2 cut(s)	1589, 1816
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 1894
Bse1I	ACTGG	2 cut(s)	931, 1069
BseAI	TCCGGA	1 cut(s)	1589
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	5 cut(s)	594, 671, 1120, 1351, 1748
BseLI	CCNNNNNNNGG	2 cut(s)	288, 1894
BseMII	CTCAG	6 cut(s)	373, 442, 610, 854, 981, 1328
BseNI	ACTGG	2 cut(s)	931, 1069
BseXI	GCAGC	2 cut(s)	36, 349
BseYI	CCCAGC	1 cut(s)	282
BsgI	GTGCAG	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	4 cut(s)	292, 930, 1285, 1456
BsiSI	CCGG	2 cut(s)	1590, 1817
BslFI	GGGAC	2 cut(s)	265, 2124
BslI	CCNNNNNNNGG	2 cut(s)	288, 1894
BsmAI	GTCTC	2 cut(s)	161, 232
BsmFI	GGGAC	2 cut(s)	265, 2124
BsmI	GAATGC	1 cut(s)	1105
BsnI	GGCC	4 cut(s)	292, 930, 1285, 1456
Bso31I	GGTCTC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp13I	TCCGGA	1 cut(s)	1589
Bsp143I	GATC	9 cut(s)	265, 670, 736, 1336, 1492, 1521, 1567, 1800, 1865
Bsp1720I	GCTNAGC	1 cut(s)	1715
BspACI	CCGC	1 cut(s)	1733
BspANI	GGCC	4 cut(s)	292, 930, 1285, 1456
BspCNI	CTCAG	6 cut(s)	372, 441, 609, 855, 982, 1327
BspEI	TCCGGA	1 cut(s)	1589
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	2 cut(s)	548, 1687
BspPI	GGATC	3 cut(s)	1500, 1529, 1808
BspTI	CTTAAG	1 cut(s)	829
BspTNI	GGTCTC	1 cut(s)	161
BsrI	ACTGG	2 cut(s)	931, 1069
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	9 cut(s)	265, 670, 736, 1336, 1492, 1521, 1567, 1800, 1865
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	64
Bst2BI	CACGAG	1 cut(s)	158
Bst4CI	ACNGT	6 cut(s)	489, 651, 977, 1561, 1845, 2041
BstAFI	CTTAAG	1 cut(s)	829
BstC8I	GCNNGC	3 cut(s)	132, 1540, 1889
BstDEI	CTNAG	8 cut(s)	359, 410, 428, 596, 863, 990, 1314, 1715
BstF5I	GGATG	5 cut(s)	594, 671, 1120, 1351, 1748
BstFNI	CGCG	1 cut(s)	197
BstKTI	GATC	9 cut(s)	268, 673, 739, 1339, 1495, 1524, 1570, 1803, 1868
BstMAI	GTCTC	2 cut(s)	161, 232
BstMBI	GATC	9 cut(s)	265, 670, 736, 1336, 1492, 1521, 1567, 1800, 1865
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 140, 438
BstSFI	CTRYAG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	2 cut(s)	36, 349
BstX2I	RGATCY	2 cut(s)	1492, 1521
BstXI	CCANNNNNNTGG	1 cut(s)	1608
BstYI	RGATCY	2 cut(s)	1492, 1521
BsuRI	GGCC	4 cut(s)	292, 930, 1285, 1456
BtsCI	GGATG	5 cut(s)	594, 671, 1120, 1351, 1748
BtsIMutI	CAGTG	1 cut(s)	982
Cac8I	GCNNGC	3 cut(s)	132, 1540, 1889
Cfr13I	GGNCC	3 cut(s)	355, 1283, 1454
Csp6I	GTAC	2 cut(s)	461, 2095
CspCI	CAANNNNNGTGG	2 cut(s)	814, 849
CviAII	CATG	4 cut(s)	55, 111, 183, 251
CviQI	GTAC	2 cut(s)	461, 2095
DdeI	CTNAG	8 cut(s)	359, 410, 428, 596, 863, 990, 1314, 1715
DpnI	GATC	9 cut(s)	267, 672, 738, 1338, 1494, 1523, 1569, 1802, 1867
DpnII	GATC	9 cut(s)	265, 670, 736, 1336, 1492, 1521, 1567, 1800, 1865
DraI	TTTAAA	2 cut(s)	420, 1428
EaeI	YGGCCR	2 cut(s)	290, 928
Eco130I	CCWWGG	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	1363
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	358, 714
EcoRV	GATATC	1 cut(s)	1363
EcoT14I	CCWWGG	1 cut(s)	64
EcoT22I	ATGCAT	2 cut(s)	116, 2065
EcoT38I	GRGCYC	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	4 cut(s)	58, 114, 186, 254
FalI	AAGNNNNNCTT	4 cut(s)	1567, 1599, 1876, 1908
FaqI	GGGAC	2 cut(s)	265, 2124
FatI	CATG	4 cut(s)	54, 110, 182, 250
FauI	CCCGC	1 cut(s)	1726
FauNDI	CATATG	1 cut(s)	1486
Fnu4HI	GCNGC	2 cut(s)	50, 338
FokI	GGATG	5 cut(s)	601, 678, 1127, 1358, 1735
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	2 cut(s)	50, 338
FspBI	CTAG	3 cut(s)	581, 1691, 1938
GluI	GCNGC	2 cut(s)	50, 338
GsaI	CCCAGC	1 cut(s)	286
HaeIII	GGCC	4 cut(s)	292, 930, 1285, 1456
HapII	CCGG	2 cut(s)	1590, 1817
Hin1II	CATG	4 cut(s)	58, 114, 186, 254
HincII	GTYRAC	2 cut(s)	783, 811
HindII	GTYRAC	2 cut(s)	783, 811
HindIII	AAGCTT	2 cut(s)	1321, 1712
HinfI	GANTC	3 cut(s)	225, 278, 592
HpaII	CCGG	2 cut(s)	1590, 1817
HphI	GGTGA	2 cut(s)	467, 748
Hpy166II	GTNNAC	2 cut(s)	783, 811
Hpy8I	GTNNAC	2 cut(s)	783, 811
HpyAV	CCTTC	4 cut(s)	115, 899, 1445, 1755
HpyCH4III	ACNGT	6 cut(s)	489, 651, 977, 1561, 1845, 2041
HpyCH4IV	ACGT	1 cut(s)	957
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 140, 438
HpyF3I	CTNAG	8 cut(s)	359, 410, 428, 596, 863, 990, 1314, 1715
HpySE526I	ACGT	1 cut(s)	957
Hsp92II	CATG	4 cut(s)	58, 114, 186, 254
Kpn2I	TCCGGA	1 cut(s)	1589
Kzo9I	GATC	9 cut(s)	265, 670, 736, 1336, 1492, 1521, 1567, 1800, 1865
LmnI	GCTCC	2 cut(s)	552, 639
Lsp1109I	GCAGC	2 cut(s)	36, 349
LweI	GCATC	4 cut(s)	1336, 2028, 2050, 2072
MaeI	CTAG	3 cut(s)	581, 1691, 1938
MaeII	ACGT	1 cut(s)	957
MaeIII	GTNAC	4 cut(s)	253, 362, 1646, 2035
MalI	GATC	9 cut(s)	267, 672, 738, 1338, 1494, 1523, 1569, 1802, 1867
MboI	GATC	9 cut(s)	265, 670, 736, 1336, 1492, 1521, 1567, 1800, 1865
MfeI	CAATTG	3 cut(s)	541, 1445, 1680
MflI	RGATCY	2 cut(s)	1492, 1521
MhlI	GDGCHC	1 cut(s)	62
MlsI	TGGCCA	1 cut(s)	930
MluNI	TGGCCA	1 cut(s)	930
MlyI	GAGTC	2 cut(s)	234, 287
MmeI	TCCRAC	3 cut(s)	1122, 1589, 2023
Mox20I	TGGCCA	1 cut(s)	930
Mph1103I	ATGCAT	2 cut(s)	116, 2065
MroI	TCCGGA	1 cut(s)	1589
MroXI	GAANNNNTTC	2 cut(s)	1087, 1946
MscI	TGGCCA	1 cut(s)	930
MslI	CAYNNNNRTG	1 cut(s)	1808
Msp20I	TGGCCA	1 cut(s)	930
MspA1I	CMGCKG	1 cut(s)	1060
MspCI	CTTAAG	1 cut(s)	829
MspI	CCGG	2 cut(s)	1590, 1817
MunI	CAATTG	3 cut(s)	541, 1445, 1680
Mva1269I	GAATGC	1 cut(s)	1105
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	3 cut(s)	49, 140, 438
NdeI	CATATG	1 cut(s)	1486
NdeII	GATC	9 cut(s)	265, 670, 736, 1336, 1492, 1521, 1567, 1800, 1865
NlaIII	CATG	4 cut(s)	58, 114, 186, 254
NlaIV	GGNNCC	2 cut(s)	548, 1687
NsiI	ATGCAT	2 cut(s)	116, 2065
PctI	GAATGC	1 cut(s)	1105
PdmI	GAANNNNTTC	2 cut(s)	1087, 1946
PfeI	GAWTC	1 cut(s)	592
PkrI	GCNGC	2 cut(s)	51, 339
PleI	GAGTC	2 cut(s)	233, 286
PpsI	GAGTC	2 cut(s)	233, 286
PsiI	TTATAA	1 cut(s)	894
PspFI	CCCAGC	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	548, 1687
PspPI	GGNCC	3 cut(s)	355, 1283, 1454
PsuI	RGATCY	2 cut(s)	1492, 1521
PvuII	CAGCTG	1 cut(s)	1060
RsaI	GTAC	2 cut(s)	462, 2096
RsaNI	GTAC	2 cut(s)	461, 2095
RseI	CAYNNNNRTG	1 cut(s)	1808
SatI	GCNGC	2 cut(s)	50, 338
Sau3AI	GATC	9 cut(s)	265, 670, 736, 1336, 1492, 1521, 1567, 1800, 1865
Sau96I	GGNCC	3 cut(s)	355, 1283, 1454
SchI	GAGTC	2 cut(s)	234, 287
SduI	GDGCHC	1 cut(s)	62
SfaNI	GCATC	4 cut(s)	1336, 2028, 2050, 2072
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	1808
SmlI	CTYRAG	5 cut(s)	303, 829, 1642, 2014, 2133
SmoI	CTYRAG	5 cut(s)	303, 829, 1642, 2014, 2133
SsiI	CCGC	1 cut(s)	1733
SspI	AATATT	2 cut(s)	350, 768
SspMI	CTAG	3 cut(s)	581, 1691, 1938
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	6 cut(s)	489, 651, 977, 1561, 1845, 2041
TaiI	ACGT	1 cut(s)	960
TaqI	TCGA	2 cut(s)	1499, 1864
TatI	WGTACW	1 cut(s)	2094
TfiI	GAWTC	1 cut(s)	592
TscAI	CASTG	1 cut(s)	982
TseI	GCWGC	2 cut(s)	49, 337
TspDTI	ATGAA	7 cut(s)	171, 605, 681, 1080, 1139, 1409, 1737
TspGWI	ACGGA	2 cut(s)	796, 1163
TspRI	CASTG	1 cut(s)	982
Vha464I	CTTAAG	1 cut(s)	829
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	6 cut(s)	387, 422, 1353, 1429, 1552, 1668
XmnI	GAANNNNTTC	2 cut(s)	1087, 1946
XspI	CTAG	3 cut(s)	581, 1691, 1938
Zsp2I	ATGCAT	2 cut(s)	116, 2065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.