Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005331

Physical Location & Seq

Genomic Coordinates Forward (+)

429728 .. 430934

Gene Structure 1207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g00370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCGTCCCTCTCCTCGGCGATCTCCAGTACTCCCGGCCACACGCTCTCCCCCAACGCAATGGCTCACGATGCCAAGCCCAGGAAGCTCTGCTACTCTCATTGCCCTACATTTCTTCTCCCTCCTCACCGCTCTCCCATTTGCAGGAAAAGGACACTGAAAACCCGTATCTTTGCATCAGTCACTGATACTCCAGTACATGCATCCCCTGAAAAAGTTCAGTTTCCAAAAGGTGACAGCTGGTCTGTTCATAAATTTGGCGGTACTTGTGTGGGGAGTTCAGAAAGAATTAAGAATGTTGCAAAAATAATTCTTAGTGATGATTCAGAGAGGAAGTTTGTAGTTGTCTCTGCAATGTCCAAGGTAACAGATATGATGTATGATCTTATCTACAAGGCTCAGTCACGAGATGAGGCCTACATATCTGCATTAGATGTGGTTTTAGAAAAGCACAAATGTACAGCTCTTGATCTACTTGATGGGGATCGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004072 GO:0004412 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009090 GO:0009092 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016772 GO:0016774 GO:0019202 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

AA_kinase ACT ACT_7 Homoserine_dh NAD_binding_3

Protein Analysis

165

Amino Acids

18.08

Weight (kDa)

9.13

Isoelectric Point (pI)

48.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	82 - 139	6.3e-08	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31230 AT4G19710 AT4G19710
fragaria_vesca	FvH4_2g00800 FvH4_2g00800 FvH4_2g00800 FvH4_2g00800
malus_domestica	MD05G1003800.v1.1 MD10G1004700.v1.1
prunus_persica	Prupe.5G007500_v2.0.a1 Prupe.5G007500_v2.0.a1 Prupe.5G007500_v2.0.a1 Prupe.8G007000_v2.0.a1 Prupe.8G007000_v2.0.a1
pyrus_communis	pycom05g00330 pycom10g00370 pycom10g00380
rosa_chinensis	RchiOBHm_Chr6g0251231
rosa_laevigata	RLG00000015472
rosa_multiflora	Rmu_sc0001637.1_g000003 Rmu_sc0015396.1_g000003
rosa_roxburghii	Rroxscaffold_7G00216900
rosa_rugosa	Rorug05G0500900.1 Rorug05G0501000
rosa_samantha	Rh6BG001700 Rh6CG007400 Rh6DG007800
rosa_wichuraiana	Rw6G001010 Rw6G001120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	132
AciI	CCGC	2 cut(s)	130, 261
AclWI	GGATC	1 cut(s)	492
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	31, 198, 265, 460
AfiI	CCNNNNNNNGG	3 cut(s)	16, 81, 144
AhdI	GACNNNNNGTC	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	80
AluBI	AGCT	3 cut(s)	88, 240, 464
AluI	AGCT	3 cut(s)	88, 240, 464
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	1 cut(s)	492
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	37, 414
ApoI	RAATTY	1 cut(s)	254
Asp700I	GAANNNNTTC	1 cut(s)	216
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	119, 245
BaeI	ACNNNNGTAYC	4 cut(s)	180, 213, 255, 288
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
BauI	CACGAG	1 cut(s)	405
BccI	CCATC	1 cut(s)	473
BciT130I	CCWGG	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	352
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	36, 82
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmrFI	CCNGG	2 cut(s)	36, 82
BmsI	GCATC	3 cut(s)	61, 185, 212
BpmI	CTGGAG	2 cut(s)	10, 177
BpuMI	CCSGG	1 cut(s)	36
Bsa29I	ATCGAT	1 cut(s)	487
BsaBI	GATNNNNATC	1 cut(s)	483
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	15, 80, 360
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 175, 205
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 81, 144
Bse1I	ACTGG	2 cut(s)	27, 194
Bse3DI	GCAATG	3 cut(s)	66, 100, 360
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	82
BseCI	ATCGAT	1 cut(s)	487
BseDI	CCNNGG	3 cut(s)	15, 80, 360
BseGI	GGATG	1 cut(s)	203
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	3 cut(s)	16, 81, 144
BseMI	GCAATG	3 cut(s)	66, 100, 360
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	27, 194
BseRI	GAGGAG	2 cut(s)	4, 114
BshFI	GGCC	2 cut(s)	39, 416
BshVI	ATCGAT	1 cut(s)	487
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	3 cut(s)	16, 81, 144
BsmAI	GTCTC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	39, 416
Bsp1407I	TGTACA	1 cut(s)	458
Bsp143I	GATC	5 cut(s)	21, 382, 469, 484, 488
BspACI	CCGC	2 cut(s)	130, 261
BspANI	GGCC	2 cut(s)	39, 416
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	487
BspPI	GGATC	1 cut(s)	492
BsrBI	CCGCTC	1 cut(s)	132
BsrDI	GCAATG	3 cut(s)	66, 100, 360
BsrGI	TGTACA	1 cut(s)	458
BsrI	ACTGG	2 cut(s)	27, 194
BssECI	CCNNGG	3 cut(s)	15, 80, 360
BssMI	GATC	5 cut(s)	21, 382, 469, 484, 488
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	360
Bst2BI	CACGAG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	458
BstDEI	CTNAG	3 cut(s)	314, 399, 492
BstF5I	GGATG	1 cut(s)	203
BstKTI	GATC	5 cut(s)	24, 385, 472, 487, 491
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	5 cut(s)	21, 382, 469, 484, 488
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 85
BstNI	CCWGG	1 cut(s)	82
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	34, 80
BstXI	CCANNNNNNTGG	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	487
BsuRI	GGCC	2 cut(s)	39, 416
BsuTUI	ATCGAT	1 cut(s)	487
BtsCI	GGATG	1 cut(s)	203
BtsIMutI	CAGTG	2 cut(s)	155, 183
CaiI	CAGNNNCTG	1 cut(s)	185
ClaI	ATCGAT	1 cut(s)	487
Csp6I	GTAC	4 cut(s)	30, 197, 264, 459
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	8 cut(s)	39, 65, 79, 88, 240, 398, 416, 464
CviKI_1	RGCY	8 cut(s)	39, 65, 79, 88, 240, 398, 416, 464
CviQI	GTAC	4 cut(s)	30, 197, 264, 459
DdeI	CTNAG	3 cut(s)	314, 399, 492
DpnI	GATC	5 cut(s)	23, 384, 471, 486, 490
DpnII	GATC	5 cut(s)	21, 382, 469, 484, 488
DriI	GACNNNNNGTC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	37
Eam1105I	GACNNNNNGTC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	360
Eco147I	AGGCCT	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	80
EcoT14I	CCWWGG	1 cut(s)	360
EcoT22I	ATGCAT	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	1 cut(s)	203
FaiI	YATR	5 cut(s)	201, 252, 374, 381, 422
FatI	CATG	1 cut(s)	199
FokI	GGATG	1 cut(s)	190
GsuI	CTGGAG	2 cut(s)	10, 177
HaeIII	GGCC	2 cut(s)	39, 416
HapII	CCGG	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	203
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	2 cut(s)	119, 245
Hpy188I	TCNGA	2 cut(s)	283, 328
Hpy188III	TCNNGA	3 cut(s)	68, 405, 467
HpyCH4V	TGCA	6 cut(s)	144, 176, 203, 302, 353, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 85
HpyF3I	CTNAG	3 cut(s)	314, 399, 492
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	203
Kzo9I	GATC	5 cut(s)	21, 382, 469, 484, 488
LpnPI	CCDG	8 cut(s)	40, 49, 67, 94, 130, 207, 222, 226
LweI	GCATC	3 cut(s)	61, 185, 212
MaeIII	GTNAC	4 cut(s)	181, 233, 364, 402
MalI	GATC	5 cut(s)	23, 384, 471, 486, 490
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	5 cut(s)	21, 382, 469, 484, 488
MboII	GAAGA	1 cut(s)	107
MluCI	AATT	3 cut(s)	254, 288, 309
MnlI	CCTC	6 cut(s)	20, 25, 132, 135, 324, 406
Mph1103I	ATGCAT	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	240
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	2 cut(s)	36, 82
MvaI	CCWGG	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	71, 85
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	5 cut(s)	21, 382, 469, 484, 488
NlaIII	CATG	1 cut(s)	203
NmuCI	GTSAC	3 cut(s)	181, 233, 402
NsiI	ATGCAT	1 cut(s)	205
NspI	RCATGY	1 cut(s)	203
PceI	AGGCCT	1 cut(s)	416
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
PstNI	CAGNNNCTG	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	240
RsaI	GTAC	4 cut(s)	31, 198, 265, 460
RsaNI	GTAC	4 cut(s)	30, 197, 264, 459
SaqAI	TTAA	1 cut(s)	291
Sau3AI	GATC	5 cut(s)	21, 382, 469, 484, 488
ScaI	AGTACT	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	36, 82
SetI	ASST	5 cut(s)	90, 235, 242, 366, 466
SfaNI	GCATC	3 cut(s)	61, 185, 212
Sse9I	AATT	3 cut(s)	254, 288, 309
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	2 cut(s)	130, 261
StuI	AGGCCT	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	34, 80
StyI	CCWWGG	1 cut(s)	360
TaqI	TCGA	1 cut(s)	487
TasI	AATT	3 cut(s)	254, 288, 309
TatI	WGTACW	3 cut(s)	29, 196, 458
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	2 cut(s)	162, 190
TseFI	GTSAC	3 cut(s)	181, 233, 402
Tsp45I	GTSAC	3 cut(s)	181, 233, 402
TspDTI	ATGAA	1 cut(s)	239
TspRI	CASTG	2 cut(s)	162, 190
XapI	RAATTY	1 cut(s)	254
XceI	RCATGY	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	216
ZrmI	AGTACT	1 cut(s)	31
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.