Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004275

Physical Location & Seq

Genomic Coordinates Reverse (-)

725153 .. 727728

Gene Structure 2576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAAGCAAAAGGACCGAGAGTTAGCTTCCCTCCATTTCTTTCATGGCCGAACAGACAACCACGTGACGACAATTTCACGCCATGCGGTGATCCAACGGCTGCCAGTGTGGGCACGCGAACGCGATCCCCGCAATAACTTCGTTAAGAAGTCTTTAGAAAGTCCCCTTCCATTTTCTTCGATTCTCTGCATACAGCAAAGCAAAACGCCTCTACTTTCCGTTGACAATCTGAGGATTTCAGGGGTTTTTTTAGTGTTTTTGTGGAATTTGATTTCGATGGAATCTGCAACGACGTCGTCTGGTGAGTCGGAGTTCGATTACTTGTTCAAGCTGCTGCTGATTGGGGACTCGGGGGTTGGGAAGAGCACGCTCCTCTTGAGTTTCACTTCCGACACCTTCGAGGATCTCTCTCCTACTATCGGTGTGGATTTTAAGATAAAGCATGTCACTCTTGGGGGTAAGAAATTGAAGCTTGCAATTTGGGACACAGCTGGACAGGAAAGATTTAGAACTCTTACTAGTTCATATTACAGAGGAGCTCAGGGGATAATAATGGTGTATGATGTGACACGAAGAGAAACATTTACGAATTTGTCTGATATATGGGCGAAAGAGATTGATCTGTATTCCACTAGTCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTCGATAAGGAAAGCGAAAGGACTGTAAGTAAAAAAGAGGGGATGGAATTTGCTAGGGAATATGGATGCCTTTTTCTTGAGTGCAGTGCAAAAACTCGAGTAAATGTAGAGCAGTGCTTTGAGGAGCTTGTCTTAAAGATATTGGAAACACCGAGTCTCGTGGCTGAGGGATCAGCAGGTGTGAAAAAGAACATCTTCAAGCAAAAAGCTCCTCAGTCTGATGAATCAATAAGTGGCTGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

305

Amino Acids

34.26

Weight (kDa)

8.09

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	109 - 267	9.9e-18	ADP-ribosylation factor family
Ras	PF00071	110 - 271	3.5e-58	Ras family
Roc	PF08477	110 - 225	7.9e-31	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43890 AT1G43890 AT1G43890
fragaria_vesca	FvH4_1g24410 FvH4_2g15140
malus_domestica	MD00G1163000.v1.1 MD01G1005500.v1.1 MD05G1010800.v1.1 MD10G1009500.v1.1
prunus_persica	Prupe.4G271600_v2.0.a1 Prupe.4G271600_v2.0.a1 Prupe.8G013500_v2.0.a1
pyrus_communis	pycom05g00580 pycom10g00570 pycom15g30450
rosa_chinensis	RchiOBHm_Chr2g0121291 RchiOBHm_Chr6g0277801
rosa_laevigata	RLG00000013268 RLG00000018616
rosa_multiflora	Rmu_sc0000079.1_g000029
rosa_roxburghii	Rroxscaffold_7G00190920
rosa_rugosa	Rorug02G0233100 Rorug02G0233200 Rorug06G0111200
rosa_samantha	Rh2AG290000 Rh2DG314800 Rh6AG222100 Rh6BG225500 Rh6CG228200 Rh6DG219200
rosa_wichuraiana	Rw2G023250 Rw6G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	836
AatII	GACGTC	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	836
AccII	CGCG	2 cut(s)	117, 123
AciI	CCGC	2 cut(s)	86, 130
AclWI	GGATC	4 cut(s)	85, 119, 411, 847
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	3 cut(s)	265, 589, 716
AcvI	CACGTG	1 cut(s)	64
AcyI	GRCGYC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	419
AgsI	TTSAA	3 cut(s)	328, 469, 868
AhlI	ACTAGT	2 cut(s)	518, 632
AluBI	AGCT	7 cut(s)	26, 331, 472, 491, 539, 796, 878
AluI	AGCT	7 cut(s)	26, 331, 472, 491, 539, 796, 878
Alw21I	GWGCWC	2 cut(s)	368, 541
Alw26I	GTCTC	1 cut(s)	830
AlwI	GGATC	4 cut(s)	85, 119, 411, 847
Ama87I	CYCGRG	2 cut(s)	349, 765
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	3 cut(s)	100, 331, 334
ApoI	RAATTY	3 cut(s)	265, 589, 716
Asp700I	GAANNNNTTC	1 cut(s)	863
AspS9I	GGNCC	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	100, 314
AvaI	CYCGRG	2 cut(s)	349, 765
AvaII	GGWCC	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	541
BauI	CACGAG	1 cut(s)	827
BbrPI	CACGTG	1 cut(s)	64
Bbv12I	GWGCWC	2 cut(s)	368, 541
BbvCI	CCTCAGC	1 cut(s)	834
BbvI	GCAGC	3 cut(s)	87, 318, 321
BccI	CCATC	2 cut(s)	271, 706
BceAI	ACGGC	1 cut(s)	113
BcgI	CGANNNNNNTGC	4 cut(s)	121, 155, 276, 310
BcoDI	GTCTC	1 cut(s)	830
BcuI	ACTAGT	2 cut(s)	518, 632
BfaI	CTAG	3 cut(s)	519, 633, 723
BfuAI	ACCTGC	1 cut(s)	836
BisI	GCNGC	3 cut(s)	101, 332, 335
BlsI	GCNGC	3 cut(s)	102, 333, 336
Bme18I	GGWCC	1 cut(s)	13
BmeT110I	CYCGRG	2 cut(s)	349, 765
BmgT120I	GGNCC	1 cut(s)	13
BmsI	GCATC	3 cut(s)	642, 654, 725
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
Bpu10I	CCTNAGC	2 cut(s)	540, 834
BpuEI	CTTGAG	2 cut(s)	397, 767
BsaAI	YACGTR	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	104
BseGI	GGATG	2 cut(s)	717, 740
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMII	CTCAG	4 cut(s)	221, 554, 825, 896
BseNI	ACTGG	1 cut(s)	104
BseRI	GAGGAG	4 cut(s)	362, 549, 806, 870
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	87, 318, 321
BsgI	GTGCAG	1 cut(s)	772
Bsh1236I	CGCG	2 cut(s)	117, 123
BshFI	GGCC	1 cut(s)	48
BsiHKAI	GWGCWC	2 cut(s)	368, 541
BsiHKCI	CYCGRG	2 cut(s)	349, 765
BslFI	GGGAC	3 cut(s)	147, 359, 497
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmAI	GTCTC	1 cut(s)	830
BsmFI	GGGAC	3 cut(s)	147, 359, 497
BsnI	GGCC	1 cut(s)	48
BsoBI	CYCGRG	2 cut(s)	349, 765
Bsp1286I	GDGCHC	3 cut(s)	115, 368, 541
Bsp143I	GATC	5 cut(s)	90, 124, 403, 619, 839
BspACI	CCGC	2 cut(s)	86, 130
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	4 cut(s)	222, 553, 826, 895
BspFNI	CGCG	2 cut(s)	117, 123
BspMI	ACCTGC	1 cut(s)	836
BspPI	GGATC	4 cut(s)	85, 119, 411, 847
BspQI	GCTCTTC	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	104
BssMI	GATC	5 cut(s)	90, 124, 403, 619, 839
BssNI	GRCGYC	1 cut(s)	293
BssSI	CACGAG	1 cut(s)	827
Bst2BI	CACGAG	1 cut(s)	827
Bst4CI	ACNGT	1 cut(s)	694
Bst6I	CTCTTC	2 cut(s)	356, 568
BstACI	GRCGYC	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	64
BstC8I	GCNNGC	3 cut(s)	115, 368, 474
BstDEI	CTNAG	4 cut(s)	230, 540, 834, 882
BstF5I	GGATG	2 cut(s)	717, 740
BstFNI	CGCG	2 cut(s)	117, 123
BstKTI	GATC	5 cut(s)	93, 127, 406, 622, 842
BstMAI	GTCTC	1 cut(s)	830
BstMBI	GATC	5 cut(s)	90, 124, 403, 619, 839
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	446
BstSLI	GKGCMC	1 cut(s)	115
BstUI	CGCG	2 cut(s)	117, 123
BstV1I	GCAGC	3 cut(s)	87, 318, 321
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	717, 740
BtsI	GCAGTG	2 cut(s)	760, 788
BtsIMutI	CAGTG	3 cut(s)	111, 760, 788
BveI	ACCTGC	1 cut(s)	836
Cac8I	GCNNGC	3 cut(s)	115, 368, 474
Cfr13I	GGNCC	1 cut(s)	13
CviAII	CATG	3 cut(s)	44, 83, 443
DdeI	CTNAG	4 cut(s)	230, 540, 834, 882
DpnI	GATC	5 cut(s)	92, 126, 405, 621, 841
DpnII	GATC	5 cut(s)	90, 124, 403, 619, 839
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	356, 568
EarI	CTCTTC	2 cut(s)	356, 568
Ecl136II	GAGCTC	1 cut(s)	539
Eco24I	GRGCYC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	539
Eco72I	CACGTG	1 cut(s)	64
Eco88I	CYCGRG	2 cut(s)	349, 765
EcoICRI	GAGCTC	1 cut(s)	539
EcoT38I	GRGCYC	1 cut(s)	541
FaeI	CATG	3 cut(s)	47, 86, 446
FaiI	YATR	9 cut(s)	45, 84, 191, 444, 526, 561, 602, 604, 732
FalI	AAGNNNNNCTT	2 cut(s)	848, 880
FaqI	GGGAC	3 cut(s)	147, 359, 497
FatI	CATG	3 cut(s)	43, 82, 442
FauI	CCCGC	1 cut(s)	137
Fnu4HI	GCNGC	3 cut(s)	101, 332, 335
FokI	GGATG	2 cut(s)	724, 747
FriOI	GRGCYC	1 cut(s)	541
Fsp4HI	GCNGC	3 cut(s)	101, 332, 335
FspBI	CTAG	3 cut(s)	519, 633, 723
GluI	GCNGC	3 cut(s)	101, 332, 335
HaeIII	GGCC	1 cut(s)	48
Hin1I	GRCGYC	1 cut(s)	293
Hin1II	CATG	3 cut(s)	47, 86, 446
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	6 cut(s)	181, 281, 305, 347, 823, 893
HphI	GGTGA	2 cut(s)	100, 314
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	5 cut(s)	231, 310, 391, 598, 889
Hpy188III	TCNNGA	4 cut(s)	376, 638, 649, 746
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	2 cut(s)	295, 298
HpyAV	CCTTC	2 cut(s)	176, 406
HpyCH4III	ACNGT	1 cut(s)	694
HpyCH4IV	ACGT	2 cut(s)	63, 293
HpyCH4V	TGCA	6 cut(s)	189, 287, 476, 645, 753, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	4 cut(s)	230, 540, 834, 882
HpySE526I	ACGT	2 cut(s)	63, 293
Hsp92I	GRCGYC	1 cut(s)	293
Hsp92II	CATG	3 cut(s)	47, 86, 446
Kzo9I	GATC	5 cut(s)	90, 124, 403, 619, 839
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	4 cut(s)	375, 536, 793, 883
LpnPI	CCDG	7 cut(s)	117, 225, 285, 477, 482, 527, 831
Lsp1109I	GCAGC	3 cut(s)	87, 318, 321
LweI	GCATC	3 cut(s)	642, 654, 725
MaeI	CTAG	3 cut(s)	519, 633, 723
MaeII	ACGT	2 cut(s)	63, 293
MaeIII	GTNAC	3 cut(s)	64, 445, 565
MalI	GATC	5 cut(s)	92, 126, 405, 621, 841
MboI	GATC	5 cut(s)	90, 124, 403, 619, 839
MboII	GAAGA	4 cut(s)	168, 373, 585, 856
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	3 cut(s)	115, 368, 541
MluCI	AATT	6 cut(s)	72, 265, 464, 477, 589, 716
MlyI	GAGTC	3 cut(s)	314, 341, 832
MmeI	TCCRAC	4 cut(s)	118, 288, 414, 640
MroXI	GAANNNNTTC	1 cut(s)	863
MseI	TTAA	3 cut(s)	144, 432, 803
MslI	CAYNNNNRTG	1 cut(s)	650
MspA1I	CMGCKG	1 cut(s)	491
MvnI	CGCG	2 cut(s)	117, 123
MwoI	GCNNNNNNNGC	1 cut(s)	129
NdeII	GATC	5 cut(s)	90, 124, 403, 619, 839
NlaIII	CATG	3 cut(s)	47, 86, 446
NmuCI	GTSAC	3 cut(s)	64, 445, 565
NspI	RCATGY	1 cut(s)	446
PaeR7I	CTCGAG	1 cut(s)	765
PaqCI	CACCTGC	1 cut(s)	836
PciSI	GCTCTTC	1 cut(s)	356
PdmI	GAANNNNTTC	1 cut(s)	863
PfeI	GAWTC	3 cut(s)	181, 281, 893
PflFI	GACNNNGTC	1 cut(s)	295
PkrI	GCNGC	3 cut(s)	102, 333, 336
PleI	GAGTC	3 cut(s)	313, 341, 831
PmaCI	CACGTG	1 cut(s)	64
PmlI	CACGTG	1 cut(s)	64
PpsI	GAGTC	3 cut(s)	313, 341, 831
Ppu21I	YACGTR	1 cut(s)	64
Psp124BI	GAGCTC	1 cut(s)	541
PspCI	CACGTG	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	13
PspXI	VCTCGAGB	1 cut(s)	765
PsuI	RGATCY	1 cut(s)	403
PsyI	GACNNNGTC	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	650
SacI	GAGCTC	1 cut(s)	541
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	3 cut(s)	144, 432, 803
SatI	GCNGC	3 cut(s)	101, 332, 335
Sau3AI	GATC	5 cut(s)	90, 124, 403, 619, 839
Sau96I	GGNCC	1 cut(s)	13
SchI	GAGTC	3 cut(s)	314, 341, 832
SduI	GDGCHC	3 cut(s)	115, 368, 541
SfaNI	GCATC	3 cut(s)	642, 654, 725
Sfr274I	CTCGAG	1 cut(s)	765
SinI	GGWCC	1 cut(s)	13
SlaI	CTCGAG	1 cut(s)	765
SmiMI	CAYNNNNRTG	1 cut(s)	650
SmlI	CTYRAG	3 cut(s)	376, 746, 765
SmoI	CTYRAG	3 cut(s)	376, 746, 765
SpeI	ACTAGT	2 cut(s)	518, 632
Sse9I	AATT	6 cut(s)	72, 265, 464, 477, 589, 716
SsiI	CCGC	2 cut(s)	86, 130
SspMI	CTAG	3 cut(s)	519, 633, 723
SstI	GAGCTC	1 cut(s)	541
TaaI	ACNGT	1 cut(s)	694
TaiI	ACGT	2 cut(s)	66, 296
TaqI	TCGA	6 cut(s)	179, 275, 315, 399, 672, 766
TaqII	GACCGA	1 cut(s)	30
TasI	AATT	6 cut(s)	72, 265, 464, 477, 589, 716
TfiI	GAWTC	3 cut(s)	181, 281, 893
Tru1I	TTAA	3 cut(s)	144, 432, 803
Tru9I	TTAA	3 cut(s)	144, 432, 803
TscAI	CASTG	3 cut(s)	111, 760, 788
TseFI	GTSAC	3 cut(s)	64, 445, 565
TseI	GCWGC	3 cut(s)	100, 331, 334
Tsp45I	GTSAC	3 cut(s)	64, 445, 565
TspDTI	ATGAA	4 cut(s)	17, 32, 513, 906
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	3 cut(s)	111, 760, 788
Tth111I	GACNNNGTC	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	13
XapI	RAATTY	3 cut(s)	265, 589, 716
XceI	RCATGY	1 cut(s)	446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	765
XmnI	GAANNNNTTC	1 cut(s)	863
XspI	CTAG	3 cut(s)	519, 633, 723
ZraI	GACGTC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.