Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004275

Physical Location & Seq

Genomic Coordinates Forward (+)

32759255 .. 32763626

Gene Structure 4372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018616

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAATCATCATCGGCTTCGAATCAAGGCGAGTTCGATTACTTGTTCAAGCTGTTGATGATCGGCGACTCCGGCGTCGGCAAAAGCAGTCTTCTCCTCAGCTTCACTTCCGACTCCTTCGAAGACCTCTCTCCTACCATCGGTGTTGATTTTAAGGTCAAGTACGTTAATGTCGGCGGCAAGAAGCTCAAGCTTGCAATTTGGGATACAGCTGGTCAAGAGAGATTTAGAACCTTGACGAGTTCATATTACAGAGGGGCGCAAGGGATAATTATGGTTTATGATGTAACAAGGCGAGAAACATTTACAAACCTTTGTGATATATGGGCCAAGGAAATAGAACTCTATTCAACAAATCAAGACTGCATCAAGATGCTTGTGGGAAACAAAGTCGATAAGGAGAGTGACAGGGTTGTAACCAAAAAAGAGGGAATAAATTTTGCTAGGGAATCTGGATGTCTCTTTATTGAATGCAGTGCTAAAACTCGAGTTAACGTCCAGCAGTGCTTTGAAGAGCTTGTTTTAAAGATTCTGGATACTCCTAGTCTGTTAGCCGAGGGTTCTAAAGGGTTGAAAAAGAACATATTTAAGGAGAAACCACAGTCCAGTGCAGCCGCAAGCAGCTGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

211

Amino Acids

23.33

Weight (kDa)

7.47

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	15 - 174	2.3e-17	ADP-ribosylation factor family
Ras	PF00071	17 - 178	2.1e-57	Ras family
Roc	PF08477	17 - 132	1.4e-31	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43890 AT1G43890 AT1G43890
fragaria_vesca	FvH4_1g24410 FvH4_2g15140
malus_domestica	MD00G1163000.v1.1 MD01G1005500.v1.1 MD05G1010800.v1.1 MD10G1009500.v1.1
prunus_persica	Prupe.4G271600_v2.0.a1 Prupe.4G271600_v2.0.a1 Prupe.8G013500_v2.0.a1
pyrus_communis	pycom05g00580 pycom10g00570 pycom15g30450
rosa_chinensis	RchiOBHm_Chr2g0121291 RchiOBHm_Chr6g0277801
rosa_laevigata	RLG00000013268 RLG00000018616
rosa_multiflora	Rmu_sc0000079.1_g000029
rosa_roxburghii	Rroxscaffold_7G00190920
rosa_rugosa	Rorug02G0233100 Rorug02G0233200 Rorug06G0111200
rosa_samantha	Rh2AG290000 Rh2DG314800 Rh6AG222100 Rh6BG225500 Rh6CG228200 Rh6DG219200
rosa_wichuraiana	Rw2G023250 Rw6G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AciI	CCGC	2 cut(s)	177, 615
AcsI	RAATTY	1 cut(s)	436
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	5 cut(s)	49, 351, 470, 512, 574
AluBI	AGCT	7 cut(s)	52, 102, 187, 193, 212, 517, 624
AluI	AGCT	7 cut(s)	52, 102, 187, 193, 212, 517, 624
Alw26I	GTCTC	1 cut(s)	464
Ama87I	CYCGRG	1 cut(s)	486
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	2 cut(s)	611, 621
ApoI	RAATTY	1 cut(s)	436
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	327
AsuII	TTCGAA	2 cut(s)	20, 120
AvaI	CYCGRG	1 cut(s)	486
BbsI	GAAGAC	2 cut(s)	83, 129
BbvCI	CCTCAGC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	623
BccI	CCATC	1 cut(s)	146
BciVI	GTATCC	2 cut(s)	199, 529
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	2 cut(s)	444, 543
BfuI	GTATCC	2 cut(s)	199, 529
BisI	GCNGC	4 cut(s)	178, 612, 615, 622
BlsI	GCNGC	4 cut(s)	179, 613, 616, 623
BmeT110I	CYCGRG	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	327
BmsI	GCATC	2 cut(s)	363, 375
BpiI	GAAGAC	2 cut(s)	83, 129
Bpu10I	CCTNAGC	1 cut(s)	98
Bpu14I	TTCGAA	2 cut(s)	20, 120
BpuEI	CTTGAG	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	330, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	606
BseDI	CCNNGG	2 cut(s)	330, 555
BseGI	GGATG	1 cut(s)	461
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	606
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	623
BsgI	GTGCAG	1 cut(s)	630
BshFI	GGCC	1 cut(s)	329
BsiHKCI	CYCGRG	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	329
BsoBI	CYCGRG	1 cut(s)	486
Bsp119I	TTCGAA	2 cut(s)	20, 120
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	2 cut(s)	177, 615
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	111
BspQI	GCTCTTC	1 cut(s)	507
BspT104I	TTCGAA	2 cut(s)	20, 120
BsrI	ACTGG	1 cut(s)	606
BssECI	CCNNGG	2 cut(s)	330, 555
BssMI	GATC	1 cut(s)	60
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	603
Bst6I	CTCTTC	1 cut(s)	507
BstACI	GRCGYC	1 cut(s)	75
BstAPI	GCANNNNNTGC	1 cut(s)	627
BstBI	TTCGAA	2 cut(s)	20, 120
BstC8I	GCNNGC	2 cut(s)	195, 619
BstDEI	CTNAG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	461
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 627
BstV1I	GCAGC	1 cut(s)	623
BstV2I	GAAGAC	2 cut(s)	83, 129
BsuI	GTATCC	2 cut(s)	199, 529
BsuRI	GGCC	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	461
BtsI	GCAGTG	2 cut(s)	481, 509
BtsIMutI	CAGTG	3 cut(s)	481, 509, 613
Cac8I	GCNNGC	2 cut(s)	195, 619
CfoI	GCGC	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	327
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	163
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
DraI	TTTAAA	1 cut(s)	525
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	486
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
FaiI	YATR	6 cut(s)	247, 275, 282, 323, 325, 584
Fnu4HI	GCNGC	4 cut(s)	178, 612, 615, 622
FokI	GGATG	1 cut(s)	468
Fsp4HI	GCNGC	4 cut(s)	178, 612, 615, 622
FspBI	CTAG	2 cut(s)	444, 543
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	4 cut(s)	178, 612, 615, 622
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	262
Hin1I	GRCGYC	1 cut(s)	75
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	6 cut(s)	5, 22, 68, 113, 449, 529
HpaI	GTTAAC	1 cut(s)	493
HpaII	CCGG	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	5 cut(s)	218, 359, 370, 453, 533
Hpy8I	GTNNAC	1 cut(s)	493
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	603
HpyCH4IV	ACGT	2 cut(s)	165, 495
HpyCH4V	TGCA	4 cut(s)	197, 366, 474, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 627
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	2 cut(s)	165, 495
Hsp92I	GRCGYC	1 cut(s)	75
HspAI	GCGC	1 cut(s)	260
KspAI	GTTAAC	1 cut(s)	493
Kzo9I	GATC	1 cut(s)	60
LguI	GCTCTTC	1 cut(s)	507
LpnPI	CCDG	7 cut(s)	85, 198, 394, 438, 512, 518, 619
Lsp1109I	GCAGC	1 cut(s)	623
LweI	GCATC	2 cut(s)	363, 375
MaeI	CTAG	2 cut(s)	444, 543
MaeII	ACGT	2 cut(s)	165, 495
MaeIII	GTNAC	3 cut(s)	286, 404, 415
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	3 cut(s)	83, 134, 524
MluCI	AATT	3 cut(s)	198, 270, 436
MlyI	GAGTC	2 cut(s)	62, 107
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	107, 137, 248, 421, 550
MseI	TTAA	5 cut(s)	153, 168, 492, 524, 588
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	2 cut(s)	212, 624
MspI	CCGG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	476
MwoI	GCNNNNNNNGC	2 cut(s)	72, 627
NdeII	GATC	1 cut(s)	60
NmeAIII	GCCGAG	1 cut(s)	580
NmuCI	GTSAC	1 cut(s)	404
NspV	TTCGAA	2 cut(s)	20, 120
PaeR7I	CTCGAG	1 cut(s)	486
PciSI	GCTCTTC	1 cut(s)	507
PctI	GAATGC	1 cut(s)	476
PfeI	GAWTC	4 cut(s)	5, 22, 449, 529
PkrI	GCNGC	4 cut(s)	179, 613, 616, 623
PleI	GAGTC	2 cut(s)	62, 107
PpsI	GAGTC	2 cut(s)	62, 107
PspPI	GGNCC	1 cut(s)	327
PspXI	VCTCGAGB	1 cut(s)	486
PvuII	CAGCTG	2 cut(s)	212, 624
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	371
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	5 cut(s)	153, 168, 492, 524, 588
SatI	GCNGC	4 cut(s)	178, 612, 615, 622
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	327
SchI	GAGTC	2 cut(s)	62, 107
SfaNI	GCATC	2 cut(s)	363, 375
Sfr274I	CTCGAG	1 cut(s)	486
SfuI	TTCGAA	2 cut(s)	20, 120
SlaI	CTCGAG	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	188, 486
SmoI	CTYRAG	2 cut(s)	188, 486
Sse9I	AATT	3 cut(s)	198, 270, 436
SsiI	CCGC	2 cut(s)	177, 615
SspMI	CTAG	2 cut(s)	444, 543
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	603
TaiI	ACGT	2 cut(s)	168, 498
TaqI	TCGA	5 cut(s)	20, 36, 120, 393, 487
TasI	AATT	3 cut(s)	198, 270, 436
TauI	GCSGC	2 cut(s)	180, 617
TfiI	GAWTC	4 cut(s)	5, 22, 449, 529
Tru1I	TTAA	5 cut(s)	153, 168, 492, 524, 588
Tru9I	TTAA	5 cut(s)	153, 168, 492, 524, 588
TscAI	CASTG	3 cut(s)	481, 509, 613
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	2 cut(s)	611, 621
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	1 cut(s)	234
TspRI	CASTG	3 cut(s)	481, 509, 613
XapI	RAATTY	1 cut(s)	436
XhoI	CTCGAG	1 cut(s)	486
XspI	CTAG	2 cut(s)	444, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.