Rorug02G0233100

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004275
Physical Location & Seq
Reverse (-)
23268863 .. 23269183
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0233100.1

Sequence Viewer

Length: 321 bp
ATGATGATGCTGATGATATTGCCGTGGAGTTGCGCGAGGCAGCTTATAAGAGGTCCAAGGTTAATTTATGGTATTCCACTTGCAGTCGCTTCGGCTCCAAAATTCTTGTCGTCAGCGGCTGTAGAAGGCCCCCGCCAGACTTTATGGGTCCCGCTATTAGCCGTAGAGATATTTATTGGTTTGACACGACCCAAGGGAAATTCAAGGTTTCCTCCCCAACGAAAACCAAAATCAAGAGATTCTCAACAGGTAAACTATCCGCGCTGTTGGGGGAGCTGGACCGCAAACTCTATTGCATCGACAACAACCCCTTTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ras

Protein Analysis

106

Amino Acids

11.76

Weight (kDa)

11.24

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 47
AccII CGCG 2 cut(s) 35, 262
AciI CCGC 5 cut(s) 116, 133, 152, 260, 282
AcsI RAATTY 2 cut(s) 101, 199
AgsI TTSAA 1 cut(s) 204
AluBI AGCT 2 cut(s) 43, 276
AluI AGCT 2 cut(s) 43, 276
AlwNI CAGNNNCTG 1 cut(s) 119
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 2 cut(s) 101, 199
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AspLEI GCGC 2 cut(s) 35, 264
AspS9I GGNCC 4 cut(s) 53, 128, 148, 279
AvaII GGWCC 3 cut(s) 53, 148, 279
BbvI GCAGC 1 cut(s) 52
BceAI ACGGC 2 cut(s) 7, 146
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BfmI CTRYAG 1 cut(s) 120
BisI GCNGC 2 cut(s) 41, 117
BlsI GCNGC 2 cut(s) 42, 118
Bme18I GGWCC 3 cut(s) 53, 148, 279
BmgT120I GGNCC 4 cut(s) 53, 128, 148, 279
BmiI GGNNCC 4 cut(s) 96, 130, 149, 150
BmsI GCATC 1 cut(s) 305
BsaJI CCNNGG 3 cut(s) 23, 56, 192
BseDI CCNNGG 3 cut(s) 23, 56, 192
BseXI GCAGC 1 cut(s) 52
Bsh1236I CGCG 2 cut(s) 35, 262
BshFI GGCC 1 cut(s) 129
BslFI GGGAC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 1 cut(s) 129
BspACI CCGC 5 cut(s) 116, 133, 152, 260, 282
BspANI GGCC 1 cut(s) 129
BspFNI CGCG 2 cut(s) 35, 262
BspLI GGNNCC 4 cut(s) 96, 130, 149, 150
BssECI CCNNGG 3 cut(s) 23, 56, 192
BssT1I CCWWGG 2 cut(s) 56, 192
BstDSI CCRYGG 1 cut(s) 23
BstFNI CGCG 2 cut(s) 35, 262
BstHHI GCGC 2 cut(s) 35, 264
BstSFI CTRYAG 1 cut(s) 120
BstUI CGCG 2 cut(s) 35, 262
BstV1I GCAGC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 23
CaiI CAGNNNCTG 1 cut(s) 119
CfoI GCGC 2 cut(s) 35, 264
Cfr13I GGNCC 4 cut(s) 53, 128, 148, 279
CviAII CATG 1 cut(s) 318
CviJI RGCY 6 cut(s) 43, 95, 119, 129, 161, 276
CviKI_1 RGCY 6 cut(s) 43, 95, 119, 129, 161, 276
Eco130I CCWWGG 2 cut(s) 56, 192
Eco47I GGWCC 3 cut(s) 53, 148, 279
EcoO109I RGGNCCY 2 cut(s) 128, 148
EcoT14I CCWWGG 2 cut(s) 56, 192
ErhI CCWWGG 2 cut(s) 56, 192
FaeI CATG 1 cut(s) 321
FaiI YATR 4 cut(s) 47, 69, 145, 319
FaqI GGGAC 1 cut(s) 134
FatI CATG 1 cut(s) 317
FauI CCCGC 2 cut(s) 140, 159
Fnu4HI GCNGC 2 cut(s) 41, 117
Fsp4HI GCNGC 2 cut(s) 41, 117
GlaI GCGC 2 cut(s) 34, 263
GluI GCNGC 2 cut(s) 41, 117
HaeIII GGCC 1 cut(s) 129
HhaI GCGC 2 cut(s) 35, 264
Hin1II CATG 1 cut(s) 321
Hin6I GCGC 2 cut(s) 33, 262
HinP1I GCGC 2 cut(s) 33, 262
HinfI GANTC 1 cut(s) 239
Hpy166II GTNNAC 1 cut(s) 253
Hpy188III TCNNGA 1 cut(s) 234
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 119
HpyCH4V TGCA 2 cut(s) 83, 296
Hsp92II CATG 1 cut(s) 321
HspAI GCGC 2 cut(s) 33, 262
KflI GGGWCCC 1 cut(s) 148
LmnI GCTCC 2 cut(s) 100, 273
LpnPI CCDG 3 cut(s) 149, 233, 262
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 305
MluCI AATT 3 cut(s) 63, 101, 199
MnlI CCTC 3 cut(s) 30, 44, 222
MseI TTAA 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 116
MvnI CGCG 2 cut(s) 35, 262
NlaIII CATG 1 cut(s) 321
NlaIV GGNNCC 4 cut(s) 96, 130, 149, 150
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 2 cut(s) 42, 118
PpuMI RGGWCCY 1 cut(s) 148
PsiI TTATAA 1 cut(s) 47
Psp5II RGGWCCY 1 cut(s) 148
PspN4I GGNNCC 4 cut(s) 96, 130, 149, 150
PspPI GGNCC 4 cut(s) 53, 128, 148, 279
PspPPI RGGWCCY 1 cut(s) 148
PstNI CAGNNNCTG 1 cut(s) 119
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 2 cut(s) 41, 117
Sau96I GGNCC 4 cut(s) 53, 128, 148, 279
SetI ASST 6 cut(s) 45, 55, 62, 209, 252, 278
SfaNI GCATC 1 cut(s) 305
SfcI CTRYAG 1 cut(s) 120
SinI GGWCC 3 cut(s) 53, 148, 279
Sse9I AATT 3 cut(s) 63, 101, 199
SsiI CCGC 5 cut(s) 116, 133, 152, 260, 282
StyI CCWWGG 2 cut(s) 56, 192
TaqI TCGA 1 cut(s) 299
TasI AATT 3 cut(s) 63, 101, 199
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseI GCWGC 1 cut(s) 40
VpaK11BI GGWCC 3 cut(s) 53, 148, 279
XapI RAATTY 2 cut(s) 101, 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.