Rorug06G0111200

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004275
Physical Location & Seq
Forward (+)
15064533 .. 15065710
1178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0111200.1

Sequence Viewer

Length: 711 bp
ATGTGGGATGTATATATTTTCAACATTGATGACATCCATGCTAATTCTGCTGAAAGCTTGCAACATAAGATCAAAGGTTTGATCGCGCAGTTTGAAAAACTATGCAAGAATTTGGAGCATGAAATTGTTAAGATTGATGAAGAGAAGAATCGTGTTGGTACGCAGAAGAAACGCACAAGTCTTGTATATAAGAGTGTTTCTGCGATTGGTCTGGTTTTTGCAGGACTTATAGGTGCGGATTTCTTACCAGATTTAGCAGACATTGTTTCTGGTATTGGAGATGTTTCTGATGTTGCAGATGCTGCTTCTAATACAGCGGATGCTGCTACTCAACCACATATTGAGTCAATACAAGCAGCATCCTTAGAAAGTATTAATAATCATGAGACTGCTTCAAAGTATGCTGTCAAGGCCGGGTTTACAGCAGTTGCTGCAGTACCTTTAAACTTAGGGCATTCATTAGTGATGTCTCATTATGATAATAAACAAAAGGTTTTGGACAACAAGAAGAAGGACATGGACGCAATACGTAGAGAAAGTGAGTCATCCATTACGGAGTTGGGCAACATTAAGTTTCGCATTAATCAGGTGGTAAACGAGATTGATTCACTACTGGCCAAAACCAACACTGCAGTTAAAATGAGTGACATAGATTTCTTAATGAAGGATACGAAGCAAAAGTTGGAGATGTTCATGAAGAAATTACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ras

Protein Analysis

236

Amino Acids

26.07

Weight (kDa)

6.07

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 136 - 235 5.8e-07 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 86
AciI CCGC 2 cut(s) 236, 317
AcoI YGGCCR 1 cut(s) 615
AcsI RAATTY 1 cut(s) 109
AfaI GTAC 2 cut(s) 160, 438
AgsI TTSAA 3 cut(s) 22, 95, 396
AjuI GAANNNNNNNTTGG 2 cut(s) 665, 697
AluBI AGCT 1 cut(s) 57
AluI AGCT 1 cut(s) 57
Alw26I GTCTC 2 cut(s) 380, 474
AlwNI CAGNNNCTG 2 cut(s) 302, 431
AoxI GGCC 2 cut(s) 411, 615
ApeKI GCWGC 4 cut(s) 302, 323, 356, 431
ApoI RAATTY 1 cut(s) 109
AseI ATTAAT 2 cut(s) 375, 582
AspLEI GCGC 1 cut(s) 88
AsuC2I CCSGG 1 cut(s) 415
BalI TGGCCA 1 cut(s) 617
BbvI GCAGC 4 cut(s) 289, 310, 368, 418
BciVI GTATCC 1 cut(s) 661
BcnI CCSGG 1 cut(s) 415
BcoDI GTCTC 2 cut(s) 380, 474
BfaI CTAG 1 cut(s) 709
BfmI CTRYAG 2 cut(s) 432, 630
BfuI GTATCC 1 cut(s) 661
BisI GCNGC 4 cut(s) 303, 324, 357, 432
BlsI GCNGC 4 cut(s) 304, 325, 358, 433
Bme1390I CCNGG 1 cut(s) 415
BmrFI CCNGG 1 cut(s) 415
BmsI GCATC 3 cut(s) 289, 310, 368
BpuMI CCSGG 1 cut(s) 415
BsaAI YACGTR 1 cut(s) 530
Bse1I ACTGG 1 cut(s) 618
BseGI GGATG 5 cut(s) 13, 33, 325, 359, 545
BseNI ACTGG 1 cut(s) 618
BseXI GCAGC 4 cut(s) 289, 310, 368, 418
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 2 cut(s) 413, 617
BsiSI CCGG 1 cut(s) 414
BsmAI GTCTC 2 cut(s) 380, 474
BsmI GAATGC 1 cut(s) 454
BsnI GGCC 2 cut(s) 413, 617
Bsp143I GATC 2 cut(s) 69, 81
BspACI CCGC 2 cut(s) 236, 317
BspANI GGCC 2 cut(s) 413, 617
BspFNI CGCG 1 cut(s) 86
BspHI TCATGA 2 cut(s) 382, 693
BspMAI CTGCAG 2 cut(s) 436, 634
BsrI ACTGG 1 cut(s) 618
BssMI GATC 2 cut(s) 69, 81
Bst6I CTCTTC 1 cut(s) 135
BstAPI GCANNNNNTGC 2 cut(s) 302, 431
BstBAI YACGTR 1 cut(s) 530
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 2 cut(s) 364, 448
BstF5I GGATG 5 cut(s) 13, 33, 325, 359, 545
BstFNI CGCG 1 cut(s) 86
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 2 cut(s) 72, 84
BstMAI GTCTC 2 cut(s) 380, 474
BstMBI GATC 2 cut(s) 69, 81
BstMWI GCNNNNNNNGC 5 cut(s) 47, 302, 323, 410, 431
BstSCI CCNGG 1 cut(s) 413
BstSFI CTRYAG 2 cut(s) 432, 630
BstSNI TACGTA 1 cut(s) 530
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 4 cut(s) 289, 310, 368, 418
BsuI GTATCC 1 cut(s) 661
BsuRI GGCC 2 cut(s) 413, 617
BtsCI GGATG 5 cut(s) 13, 33, 325, 359, 545
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 1 cut(s) 627
Cac8I GCNNGC 1 cut(s) 59
CaiI CAGNNNCTG 2 cut(s) 302, 431
CciI TCATGA 2 cut(s) 382, 693
CfoI GCGC 1 cut(s) 88
CseI GACGC 1 cut(s) 530
Csp6I GTAC 2 cut(s) 159, 437
CviAII CATG 5 cut(s) 38, 119, 383, 517, 694
CviJI RGCY 3 cut(s) 57, 413, 617
CviKI_1 RGCY 3 cut(s) 57, 413, 617
CviQI GTAC 2 cut(s) 159, 437
DdeI CTNAG 2 cut(s) 364, 448
DpnI GATC 2 cut(s) 71, 83
DpnII GATC 2 cut(s) 69, 81
DraI TTTAAA 1 cut(s) 444
EaeI YGGCCR 1 cut(s) 615
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco105I TACGTA 1 cut(s) 530
FaeI CATG 5 cut(s) 41, 122, 386, 520, 697
FatI CATG 5 cut(s) 37, 118, 382, 516, 693
Fnu4HI GCNGC 4 cut(s) 303, 324, 357, 432
FokI GGATG 5 cut(s) 20, 20, 332, 346, 532
Fsp4HI GCNGC 4 cut(s) 303, 324, 357, 432
FspBI CTAG 1 cut(s) 709
GlaI GCGC 1 cut(s) 87
GluI GCNGC 4 cut(s) 303, 324, 357, 432
HaeIII GGCC 2 cut(s) 413, 617
HapII CCGG 1 cut(s) 414
HgaI GACGC 1 cut(s) 530
HhaI GCGC 1 cut(s) 88
Hin1II CATG 5 cut(s) 41, 122, 386, 520, 697
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 4 cut(s) 148, 344, 542, 605
HpaII CCGG 1 cut(s) 414
Hpy166II GTNNAC 2 cut(s) 420, 595
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 2 cut(s) 383, 694
Hpy8I GTNNAC 2 cut(s) 420, 595
HpyAV CCTTC 2 cut(s) 505, 658
HpyCH4IV ACGT 1 cut(s) 529
HpyCH4V TGCA 6 cut(s) 61, 105, 221, 296, 434, 632
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 302, 323, 410, 431
HpyF3I CTNAG 2 cut(s) 364, 448
HpySE526I ACGT 1 cut(s) 529
Hsp92II CATG 5 cut(s) 41, 122, 386, 520, 697
HspAI GCGC 1 cut(s) 86
Kzo9I GATC 2 cut(s) 69, 81
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 7 cut(s) 197, 207, 255, 261, 427, 572, 599
Lsp1109I GCAGC 4 cut(s) 289, 310, 368, 418
LweI GCATC 3 cut(s) 289, 310, 368
MaeI CTAG 1 cut(s) 709
MaeII ACGT 1 cut(s) 529
MaeIII GTNAC 1 cut(s) 644
MalI GATC 2 cut(s) 71, 83
MboI GATC 2 cut(s) 69, 81
MboII GAAGA 5 cut(s) 152, 157, 178, 520, 709
MlsI TGGCCA 1 cut(s) 617
MluCI AATT 4 cut(s) 43, 109, 123, 701
MluNI TGGCCA 1 cut(s) 617
MlyI GAGTC 2 cut(s) 353, 551
MmeI TCCRAC 1 cut(s) 663
Mox20I TGGCCA 1 cut(s) 617
MscI TGGCCA 1 cut(s) 617
MseI TTAA 7 cut(s) 129, 375, 443, 570, 582, 636, 659
Msp20I TGGCCA 1 cut(s) 617
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 1 cut(s) 414
MspR9I CCNGG 1 cut(s) 415
Mva1269I GAATGC 1 cut(s) 454
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 5 cut(s) 47, 302, 323, 410, 431
NciI CCSGG 1 cut(s) 415
NdeII GATC 2 cut(s) 69, 81
NlaIII CATG 5 cut(s) 41, 122, 386, 520, 697
NmuCI GTSAC 1 cut(s) 644
PagI TCATGA 2 cut(s) 382, 693
PctI GAATGC 1 cut(s) 454
PfeI GAWTC 2 cut(s) 148, 605
PkrI GCNGC 4 cut(s) 304, 325, 358, 433
PleI GAGTC 2 cut(s) 352, 550
PpsI GAGTC 2 cut(s) 352, 550
Ppu21I YACGTR 1 cut(s) 530
PshBI ATTAAT 2 cut(s) 375, 582
PstI CTGCAG 2 cut(s) 436, 634
PstNI CAGNNNCTG 2 cut(s) 302, 431
RsaI GTAC 2 cut(s) 160, 438
RsaNI GTAC 2 cut(s) 159, 437
SaqAI TTAA 7 cut(s) 129, 375, 443, 570, 582, 636, 659
SatI GCNGC 4 cut(s) 303, 324, 357, 432
Sau3AI GATC 2 cut(s) 69, 81
SchI GAGTC 2 cut(s) 353, 551
ScrFI CCNGG 1 cut(s) 415
SetI ASST 7 cut(s) 59, 79, 235, 442, 495, 532, 591
SfaNI GCATC 3 cut(s) 289, 310, 368
SfcI CTRYAG 2 cut(s) 432, 630
SnaBI TACGTA 1 cut(s) 530
Sse9I AATT 4 cut(s) 43, 109, 123, 701
SsiI CCGC 2 cut(s) 236, 317
SspMI CTAG 1 cut(s) 709
StyD4I CCNGG 1 cut(s) 413
TaiI ACGT 1 cut(s) 532
TasI AATT 4 cut(s) 43, 109, 123, 701
TfiI GAWTC 2 cut(s) 148, 605
Tru1I TTAA 7 cut(s) 129, 375, 443, 570, 582, 636, 659
Tru9I TTAA 7 cut(s) 129, 375, 443, 570, 582, 636, 659
TscAI CASTG 1 cut(s) 634
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 4 cut(s) 302, 323, 356, 431
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 6 cut(s) 135, 153, 447, 677, 682, 710
TspGWI ACGGA 1 cut(s) 569
TspRI CASTG 1 cut(s) 634
VspI ATTAAT 2 cut(s) 375, 582
XapI RAATTY 1 cut(s) 109
XcmI CCANNNNNNNNNTGG 1 cut(s) 556
XspI CTAG 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.