Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004275

Physical Location & Seq

Genomic Coordinates Forward (+)

35558688 .. 35563342

Gene Structure 4655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG290000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAAAAGTGAAATGGAATCATCATCGGCTTCGAATCAAGGCGAGTTCGATTACTTGTTCAAGCTGTTGATGATCGGCGACTCCGGCGTCGGCAAGAGCAGTCTTCTCCTCAGCTTCACTTCCGACTCCTTCGAAGACCTCTCTCCTACCATCGGTGTTGATTTCAAGGTCAAGTATGTTAATGTCGGCGGCAAGAAGCTCAAGCTTGCAATTTGGGATACAGCTGGTCAAGAGAGATTTAGAACCTTGACGAGTTCATATTACAGAGGAGCGCAAGGGATAATTATGGTTTATGATGTAACAAGGCGAGAAACATTTACAAACCTTTGCGATATATGGGCCAAGGAAATAGAACTCTATTCAACAAATCAAGACTGCATCAAGATGCTTGTGGGAAACAAAGTCGATAAGGAGAGTGACAGGGTTGTAACCAAAAAAGAGGGAATAAATTTTGCTAGGGAATCTGGATGTCTCTTTATTGAATGCAGTGCTAAAACTCGAGTTAACGTCCAGCAGTGCTTTGAAGAGCTTGTGTTAAAGATTCTGGATACTCCTAGTCTGTTAGCCGAGGGTTCTAAAGGGTTGAAAAAGAACATATTTAAGGAGAAACCACAGTCCAGTGCAGCCGCAAGCAGCTGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

214

Amino Acids

23.81

Weight (kDa)

7.46

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	19 - 178	2.5e-17	ADP-ribosylation factor family
Ras	PF00071	21 - 182	2.2e-57	Ras family
Roc	PF08477	21 - 136	1.5e-31	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43890 AT1G43890 AT1G43890
fragaria_vesca	FvH4_1g24410 FvH4_2g15140
malus_domestica	MD00G1163000.v1.1 MD01G1005500.v1.1 MD05G1010800.v1.1 MD10G1009500.v1.1
prunus_persica	Prupe.4G271600_v2.0.a1 Prupe.4G271600_v2.0.a1 Prupe.8G013500_v2.0.a1
pyrus_communis	pycom05g00580 pycom10g00570 pycom15g30450
rosa_chinensis	RchiOBHm_Chr2g0121291 RchiOBHm_Chr6g0277801
rosa_laevigata	RLG00000013268 RLG00000018616
rosa_multiflora	Rmu_sc0000079.1_g000029
rosa_roxburghii	Rroxscaffold_7G00190920
rosa_rugosa	Rorug02G0233100 Rorug02G0233200 Rorug06G0111200
rosa_samantha	Rh2AG290000 Rh2DG314800 Rh6AG222100 Rh6BG225500 Rh6CG228200 Rh6DG219200
rosa_wichuraiana	Rw2G023250 Rw6G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AciI	CCGC	2 cut(s)	189, 627
AcsI	RAATTY	1 cut(s)	448
AcyI	GRCGYC	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	6 cut(s)	61, 166, 363, 482, 524, 586
AluBI	AGCT	7 cut(s)	64, 114, 199, 205, 224, 529, 636
AluI	AGCT	7 cut(s)	64, 114, 199, 205, 224, 529, 636
Alw26I	GTCTC	1 cut(s)	476
Ama87I	CYCGRG	1 cut(s)	498
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	2 cut(s)	623, 633
ApoI	RAATTY	1 cut(s)	448
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	1 cut(s)	339
AsuII	TTCGAA	2 cut(s)	32, 132
AvaI	CYCGRG	1 cut(s)	498
BbsI	GAAGAC	2 cut(s)	95, 141
BbvCI	CCTCAGC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	635
BccI	CCATC	1 cut(s)	158
BciVI	GTATCC	2 cut(s)	211, 541
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	2 cut(s)	456, 555
BfuI	GTATCC	2 cut(s)	211, 541
BisI	GCNGC	4 cut(s)	190, 624, 627, 634
BlsI	GCNGC	4 cut(s)	191, 625, 628, 635
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	339
BmsI	GCATC	2 cut(s)	375, 387
BpiI	GAAGAC	2 cut(s)	95, 141
Bpu10I	CCTNAGC	1 cut(s)	110
Bpu14I	TTCGAA	2 cut(s)	32, 132
BpuEI	CTTGAG	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	342, 567
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	618
BseDI	CCNNGG	2 cut(s)	342, 567
BseGI	GGATG	1 cut(s)	473
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMII	CTCAG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	618
BseRI	GAGGAG	2 cut(s)	98, 282
BseXI	GCAGC	1 cut(s)	635
BsgI	GTGCAG	1 cut(s)	642
BshFI	GGCC	1 cut(s)	341
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	476
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	1 cut(s)	341
BsoBI	CYCGRG	1 cut(s)	498
Bsp119I	TTCGAA	2 cut(s)	32, 132
Bsp143I	GATC	1 cut(s)	72
BspACI	CCGC	2 cut(s)	189, 627
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	1 cut(s)	123
BspQI	GCTCTTC	1 cut(s)	519
BspT104I	TTCGAA	2 cut(s)	32, 132
BsrI	ACTGG	1 cut(s)	618
BssECI	CCNNGG	2 cut(s)	342, 567
BssMI	GATC	1 cut(s)	72
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	615
Bst6I	CTCTTC	1 cut(s)	519
BstACI	GRCGYC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	639
BstBI	TTCGAA	2 cut(s)	32, 132
BstC8I	GCNNGC	2 cut(s)	207, 631
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	473
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 639
BstV1I	GCAGC	1 cut(s)	635
BstV2I	GAAGAC	2 cut(s)	95, 141
BsuI	GTATCC	2 cut(s)	211, 541
BsuRI	GGCC	1 cut(s)	341
BtsCI	GGATG	1 cut(s)	473
BtsI	GCAGTG	2 cut(s)	493, 521
BtsIMutI	CAGTG	3 cut(s)	493, 521, 625
Cac8I	GCNNGC	2 cut(s)	207, 631
CfoI	GCGC	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	339
CseI	GACGC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaiI	YATR	7 cut(s)	177, 259, 287, 294, 335, 337, 596
Fnu4HI	GCNGC	4 cut(s)	190, 624, 627, 634
FokI	GGATG	1 cut(s)	480
Fsp4HI	GCNGC	4 cut(s)	190, 624, 627, 634
FspBI	CTAG	2 cut(s)	456, 555
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	4 cut(s)	190, 624, 627, 634
HaeIII	GGCC	1 cut(s)	341
HapII	CCGG	1 cut(s)	84
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	274
Hin1I	GRCGYC	1 cut(s)	87
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	6 cut(s)	17, 34, 80, 125, 461, 541
HpaI	GTTAAC	1 cut(s)	505
HpaII	CCGG	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	5 cut(s)	230, 371, 382, 465, 545
Hpy8I	GTNNAC	1 cut(s)	505
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	615
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	4 cut(s)	209, 378, 486, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 639
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	507
Hsp92I	GRCGYC	1 cut(s)	87
HspAI	GCGC	1 cut(s)	272
KspAI	GTTAAC	1 cut(s)	505
Kzo9I	GATC	1 cut(s)	72
LguI	GCTCTTC	1 cut(s)	519
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	7 cut(s)	97, 210, 406, 450, 524, 530, 631
Lsp1109I	GCAGC	1 cut(s)	635
LweI	GCATC	2 cut(s)	375, 387
MaeI	CTAG	2 cut(s)	456, 555
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	3 cut(s)	298, 416, 427
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	3 cut(s)	95, 146, 536
MluCI	AATT	3 cut(s)	210, 282, 448
MlyI	GAGTC	2 cut(s)	74, 119
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	5 cut(s)	119, 149, 260, 433, 562
MseI	TTAA	4 cut(s)	180, 504, 536, 600
MslI	CAYNNNNRTG	1 cut(s)	383
MspA1I	CMGCKG	2 cut(s)	224, 636
MspI	CCGG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	488
MwoI	GCNNNNNNNGC	2 cut(s)	84, 639
NdeII	GATC	1 cut(s)	72
NmeAIII	GCCGAG	1 cut(s)	592
NmuCI	GTSAC	1 cut(s)	416
NspV	TTCGAA	2 cut(s)	32, 132
PaeR7I	CTCGAG	1 cut(s)	498
PciSI	GCTCTTC	1 cut(s)	519
PctI	GAATGC	1 cut(s)	488
PfeI	GAWTC	4 cut(s)	17, 34, 461, 541
PkrI	GCNGC	4 cut(s)	191, 625, 628, 635
PleI	GAGTC	2 cut(s)	74, 119
PpsI	GAGTC	2 cut(s)	74, 119
PspPI	GGNCC	1 cut(s)	339
PspXI	VCTCGAGB	1 cut(s)	498
PvuII	CAGCTG	2 cut(s)	224, 636
RseI	CAYNNNNRTG	1 cut(s)	383
SapI	GCTCTTC	1 cut(s)	519
SaqAI	TTAA	4 cut(s)	180, 504, 536, 600
SatI	GCNGC	4 cut(s)	190, 624, 627, 634
Sau3AI	GATC	1 cut(s)	72
Sau96I	GGNCC	1 cut(s)	339
SchI	GAGTC	2 cut(s)	74, 119
SfaNI	GCATC	2 cut(s)	375, 387
Sfr274I	CTCGAG	1 cut(s)	498
SfuI	TTCGAA	2 cut(s)	32, 132
SlaI	CTCGAG	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	2 cut(s)	200, 498
SmoI	CTYRAG	2 cut(s)	200, 498
Sse9I	AATT	3 cut(s)	210, 282, 448
SsiI	CCGC	2 cut(s)	189, 627
SspMI	CTAG	2 cut(s)	456, 555
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	615
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	5 cut(s)	32, 48, 132, 405, 499
TasI	AATT	3 cut(s)	210, 282, 448
TauI	GCSGC	2 cut(s)	192, 629
TfiI	GAWTC	4 cut(s)	17, 34, 461, 541
Tru1I	TTAA	4 cut(s)	180, 504, 536, 600
Tru9I	TTAA	4 cut(s)	180, 504, 536, 600
TscAI	CASTG	3 cut(s)	493, 521, 625
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	2 cut(s)	623, 633
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	17, 246
TspRI	CASTG	3 cut(s)	493, 521, 625
XapI	RAATTY	1 cut(s)	448
XhoI	CTCGAG	1 cut(s)	498
XspI	CTAG	2 cut(s)	456, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.