Rorug02G0233200

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004275
Physical Location & Seq
Forward (+)
23277219 .. 23277621
403 bp
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UTR
Exon/CDS
Intron
Rorug02G0233200.1

Sequence Viewer

Length: 228 bp
ATGTTGTCCTCAGAGCCTTCAAACTTAGGGGCAGGGCATGTTGCTGGTGTACAGACGATTATGAGTGCTAGGGTTCCTATAATCAAGCTTGTAGACTGTGGAACCGGAATTGAGTGTGATTTATCAATTGAGAACAGGGATGGCATTGTAAAATCCCAGATTGTCTACATAATATCTAGAATTGACGGAAGGTTTCAGAAACTGAGTTTTATGATAAAGAACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ras

Protein Analysis

75

Amino Acids

8.15

Weight (kDa)

7.81

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTPAP-like_central PF22600 12 - 59 4.9e-12 Poly(A) RNA polymerase, mitochondrial-like, central palm domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 93, 165
AfaI GTAC 1 cut(s) 51
AgsI TTSAA 1 cut(s) 21
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
AlwNI CAGNNNCTG 1 cut(s) 202
BccI CCATC 1 cut(s) 134
BfaI CTAG 2 cut(s) 69, 177
BmiI GGNNCC 2 cut(s) 75, 103
BsaWI WCCGGW 1 cut(s) 104
BseGI GGATG 1 cut(s) 145
BseMII CTCAG 2 cut(s) 24, 194
BsiSI CCGG 1 cut(s) 105
Bsp1407I TGTACA 1 cut(s) 49
BspCNI CTCAG 2 cut(s) 23, 195
BspLI GGNNCC 2 cut(s) 75, 103
BsrGI TGTACA 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 98
BstAUI TGTACA 1 cut(s) 49
BstDEI CTNAG 3 cut(s) 10, 25, 203
BstF5I GGATG 1 cut(s) 145
BstNSI RCATGY 1 cut(s) 41
BtsCI GGATG 1 cut(s) 145
CaiI CAGNNNCTG 1 cut(s) 202
Csp6I GTAC 1 cut(s) 50
CviAII CATG 1 cut(s) 38
CviJI RGCY 2 cut(s) 16, 88
CviKI_1 RGCY 2 cut(s) 16, 88
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 3 cut(s) 10, 25, 203
FaeI CATG 1 cut(s) 41
FaiI YATR 7 cut(s) 39, 62, 80, 170, 212, 224, 226
FatI CATG 1 cut(s) 37
FblI GTMKAC 2 cut(s) 93, 165
FokI GGATG 1 cut(s) 152
FspBI CTAG 2 cut(s) 69, 177
HapII CCGG 1 cut(s) 105
Hin1II CATG 1 cut(s) 41
HindIII AAGCTT 1 cut(s) 86
HpaII CCGG 1 cut(s) 105
Hpy166II GTNNAC 3 cut(s) 50, 94, 166
Hpy188I TCNGA 2 cut(s) 13, 198
Hpy188III TCNNGA 1 cut(s) 177
Hpy8I GTNNAC 3 cut(s) 50, 94, 166
HpyAV CCTTC 2 cut(s) 27, 183
HpyCH4III ACNGT 1 cut(s) 98
HpyF3I CTNAG 3 cut(s) 10, 25, 203
Hsp92II CATG 1 cut(s) 41
LpnPI CCDG 5 cut(s) 18, 30, 118, 121, 170
MaeI CTAG 2 cut(s) 69, 177
MfeI CAATTG 1 cut(s) 126
MluCI AATT 3 cut(s) 108, 126, 180
MnlI CCTC 1 cut(s) 19
MspI CCGG 1 cut(s) 105
MunI CAATTG 1 cut(s) 126
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 2 cut(s) 75, 103
NspI RCATGY 1 cut(s) 41
PspN4I GGNNCC 2 cut(s) 75, 103
PstNI CAGNNNCTG 1 cut(s) 202
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SetI ASST 2 cut(s) 90, 194
Sse9I AATT 3 cut(s) 108, 126, 180
SspMI CTAG 2 cut(s) 69, 177
TaaI ACNGT 1 cut(s) 98
TasI AATT 3 cut(s) 108, 126, 180
TatI WGTACW 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 201
XbaI TCTAGA 1 cut(s) 176
XceI RCATGY 1 cut(s) 41
XmiI GTMKAC 2 cut(s) 93, 165
XspI CTAG 2 cut(s) 69, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.