Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004275

Physical Location & Seq

Genomic Coordinates Forward (+)

27991121 .. 27996349

Gene Structure 5229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g30450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAGTCGGCGGTGGTTTCGAATCAAGCGGCGGAGTTCGATTACTTGTTCAAGCTCTTGATGATCGGCGACTCAGGCGTCGGCAAGAGCAGTCTTCTCCTCAGCTTCACCTCCGATTCCTTCGAAGACCTTTCGCCTACCATCGGTGTTGATTTTAAGGTCAAATATGTTACTCTCGGAGGCAAAAAACTCAAGCTTGCAATTTGGGATACAGCTGGTCAGGAGAGATTTAGAACCTTGACAAGTTCATATTACAGAGGTGCACAAGGAATCATTATGGTTTATGATGTAACAAGGCGAGAAACATTTACAAACCTTTGTGATGTATGGGCAAAAGAAATAGAACTCTACTCAACAAATCAAGACTGCATCAAGATGCTTGTTGGGAACAAAGTTGATAAGGAAAGTGACAGGGTTGTAACAAAGAAAGAGGGAATAAATTTCGCCAGGGAATCTGGGTGCCTCTTTATTGAATGCAGTGCTAAAACTCGAGTTAATGTGCAGCAGTGCTTTGAAGAGCTTGTTTTAAAGATTCTGGATACTCCCAGTCTCTTAGCCGAGGGGTCTAAAGGGGTGAAGAAGAATAACATCTTTAAGGAGAAACTGCCGCAGGCTGACGCATCGACGAGCGGATGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

214

Amino Acids

23.67

Weight (kDa)

6.4

Isoelectric Point (pI)

25.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	16 - 175	1.7e-17	ADP-ribosylation factor family
Ras	PF00071	18 - 179	4.4e-57	Ras family
Roc	PF08477	18 - 133	2.1e-31	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43890 AT1G43890 AT1G43890
fragaria_vesca	FvH4_1g24410 FvH4_2g15140
malus_domestica	MD00G1163000.v1.1 MD01G1005500.v1.1 MD05G1010800.v1.1 MD10G1009500.v1.1
prunus_persica	Prupe.4G271600_v2.0.a1 Prupe.4G271600_v2.0.a1 Prupe.8G013500_v2.0.a1
pyrus_communis	pycom05g00580 pycom10g00570 pycom15g30450
rosa_chinensis	RchiOBHm_Chr2g0121291 RchiOBHm_Chr6g0277801
rosa_laevigata	RLG00000013268 RLG00000018616
rosa_multiflora	Rmu_sc0000079.1_g000029
rosa_roxburghii	Rroxscaffold_7G00190920
rosa_rugosa	Rorug02G0233100 Rorug02G0233200 Rorug06G0111200
rosa_samantha	Rh2AG290000 Rh2DG314800 Rh6AG222100 Rh6BG225500 Rh6CG228200 Rh6DG219200
rosa_wichuraiana	Rw2G023250 Rw6G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	459
AccBSI	CCGCTC	1 cut(s)	630
AciI	CCGC	5 cut(s)	11, 29, 32, 608, 630
AcsI	RAATTY	1 cut(s)	439
AcyI	GRCGYC	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	52, 473, 515
AjnI	CCWGG	1 cut(s)	446
AluBI	AGCT	5 cut(s)	55, 105, 196, 215, 520
AluI	AGCT	5 cut(s)	55, 105, 196, 215, 520
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	554
Alw44I	GTGCAC	1 cut(s)	261
Ama87I	CYCGRG	1 cut(s)	489
ApaLI	GTGCAC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	502
ApoI	RAATTY	1 cut(s)	439
AsuHPI	GGTGA	2 cut(s)	100, 586
AsuII	TTCGAA	2 cut(s)	20, 123
AvaI	CYCGRG	1 cut(s)	489
BaeGI	GKGCMC	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	459
BbsI	GAAGAC	2 cut(s)	86, 132
Bbv12I	GWGCWC	1 cut(s)	265
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	448
BciVI	GTATCC	2 cut(s)	202, 532
BcoDI	GTCTC	1 cut(s)	554
BfuI	GTATCC	2 cut(s)	202, 532
BisI	GCNGC	3 cut(s)	30, 503, 608
BlsI	GCNGC	3 cut(s)	31, 504, 609
Bme1390I	CCNGG	1 cut(s)	448
BmeT110I	CYCGRG	1 cut(s)	489
BmiI	GGNNCC	1 cut(s)	461
BmrFI	CCNGG	1 cut(s)	448
BmrI	ACTGGG	1 cut(s)	540
BmsI	GCATC	3 cut(s)	366, 378, 629
BmuI	ACTGGG	1 cut(s)	540
BpiI	GAAGAC	2 cut(s)	86, 132
Bpu10I	CCTNAGC	1 cut(s)	101
Bpu14I	TTCGAA	2 cut(s)	20, 123
BpuEI	CTTGAG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	447, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	2 cut(s)	447, 558
BseGI	GGATG	1 cut(s)	638
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMII	CTCAG	2 cut(s)	87, 115
BseNI	ACTGG	1 cut(s)	546
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	514
BsgI	GTGCAG	1 cut(s)	521
BshNI	GGYRCC	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	265
BsiHKCI	CYCGRG	1 cut(s)	489
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	554
BsmI	GAATGC	1 cut(s)	479
BsoBI	CYCGRG	1 cut(s)	489
Bsp119I	TTCGAA	2 cut(s)	20, 123
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	5 cut(s)	11, 29, 32, 608, 630
BspCNI	CTCAG	2 cut(s)	86, 114
BspLI	GGNNCC	1 cut(s)	461
BspQI	GCTCTTC	1 cut(s)	510
BspT104I	TTCGAA	2 cut(s)	20, 123
BspT107I	GGYRCC	1 cut(s)	459
BsrBI	CCGCTC	1 cut(s)	630
BsrI	ACTGG	1 cut(s)	546
BssECI	CCNNGG	2 cut(s)	447, 558
BssMI	GATC	1 cut(s)	63
BssNI	GRCGYC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	448
Bst6I	CTCTTC	1 cut(s)	510
BstACI	GRCGYC	1 cut(s)	78
BstBI	TTCGAA	2 cut(s)	20, 123
BstC8I	GCNNGC	2 cut(s)	198, 612
BstDEI	CTNAG	3 cut(s)	73, 101, 553
BstF5I	GGATG	1 cut(s)	638
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 636
BstNI	CCWGG	1 cut(s)	448
BstSCI	CCNGG	1 cut(s)	446
BstSLI	GKGCMC	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	514
BstV2I	GAAGAC	2 cut(s)	86, 132
BsuI	GTATCC	2 cut(s)	202, 532
BtsCI	GGATG	1 cut(s)	638
BtsI	GCAGTG	2 cut(s)	484, 512
BtsIMutI	CAGTG	2 cut(s)	484, 512
Cac8I	GCNNGC	2 cut(s)	198, 612
CseI	GACGC	2 cut(s)	67, 626
CviJI	RGCY	7 cut(s)	55, 105, 196, 215, 520, 557, 614
CviKI_1	RGCY	7 cut(s)	55, 105, 196, 215, 520, 557, 614
DdeI	CTNAG	3 cut(s)	73, 101, 553
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
DraI	TTTAAA	1 cut(s)	528
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
EciI	GGCGGA	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	446
FaiI	YATR	5 cut(s)	168, 250, 278, 285, 328
Fnu4HI	GCNGC	3 cut(s)	30, 503, 608
Fsp4HI	GCNGC	3 cut(s)	30, 503, 608
GluI	GCNGC	3 cut(s)	30, 503, 608
HgaI	GACGC	2 cut(s)	67, 626
Hin1I	GRCGYC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	7 cut(s)	5, 22, 71, 116, 270, 452, 532
HphI	GGTGA	2 cut(s)	100, 586
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	2 cut(s)	115, 179
Hpy188III	TCNNGA	5 cut(s)	58, 221, 362, 373, 536
Hpy8I	GTNNAC	1 cut(s)	263
Hpy99I	CGWCG	2 cut(s)	83, 628
HpyAV	CCTTC	1 cut(s)	130
HpyCH4V	TGCA	5 cut(s)	200, 263, 369, 477, 502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 636
HpyF3I	CTNAG	3 cut(s)	73, 101, 553
Hsp92I	GRCGYC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	63
LguI	GCTCTTC	1 cut(s)	510
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	3 cut(s)	366, 378, 629
MaeIII	GTNAC	4 cut(s)	169, 289, 407, 418
MalI	GATC	1 cut(s)	65
MbiI	CCGCTC	1 cut(s)	630
MboI	GATC	1 cut(s)	63
MboII	GAAGA	5 cut(s)	86, 137, 527, 589, 592
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	2 cut(s)	201, 439
MlyI	GAGTC	2 cut(s)	14, 65
MnlI	CCTC	7 cut(s)	110, 121, 173, 251, 424, 473, 553
MseI	TTAA	4 cut(s)	156, 495, 527, 594
MslI	CAYNNNNRTG	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	448
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	448
MwoI	GCNNNNNNNGC	2 cut(s)	75, 636
NdeII	GATC	1 cut(s)	63
NlaIV	GGNNCC	1 cut(s)	461
NmeAIII	GCCGAG	1 cut(s)	583
NmuCI	GTSAC	1 cut(s)	407
NspV	TTCGAA	2 cut(s)	20, 123
PaeR7I	CTCGAG	1 cut(s)	489
PciSI	GCTCTTC	1 cut(s)	510
PctI	GAATGC	1 cut(s)	479
PfeI	GAWTC	5 cut(s)	22, 116, 270, 452, 532
PkrI	GCNGC	3 cut(s)	31, 504, 609
PleI	GAGTC	2 cut(s)	13, 65
PpsI	GAGTC	2 cut(s)	13, 65
Psp6I	CCWGG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	1 cut(s)	461
PspXI	VCTCGAGB	1 cut(s)	489
PvuII	CAGCTG	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	510
SaqAI	TTAA	4 cut(s)	156, 495, 527, 594
SatI	GCNGC	3 cut(s)	30, 503, 608
Sau3AI	GATC	1 cut(s)	63
SchI	GAGTC	2 cut(s)	14, 65
ScrFI	CCNGG	1 cut(s)	448
SduI	GDGCHC	1 cut(s)	265
SfaNI	GCATC	3 cut(s)	366, 378, 629
Sfr274I	CTCGAG	1 cut(s)	489
SfuI	TTCGAA	2 cut(s)	20, 123
SlaI	CTCGAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	2 cut(s)	191, 489
SmoI	CTYRAG	2 cut(s)	191, 489
Sse9I	AATT	2 cut(s)	201, 439
SsiI	CCGC	5 cut(s)	11, 29, 32, 608, 630
StyD4I	CCNGG	1 cut(s)	446
TaqI	TCGA	5 cut(s)	20, 39, 123, 490, 623
TasI	AATT	2 cut(s)	201, 439
TauI	GCSGC	2 cut(s)	32, 610
TfiI	GAWTC	5 cut(s)	22, 116, 270, 452, 532
Tru1I	TTAA	4 cut(s)	156, 495, 527, 594
Tru9I	TTAA	4 cut(s)	156, 495, 527, 594
TscAI	CASTG	2 cut(s)	484, 512
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	1 cut(s)	502
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	2 cut(s)	484, 512
VneI	GTGCAC	1 cut(s)	261
XapI	RAATTY	1 cut(s)	439
XhoI	CTCGAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.