Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004275

Physical Location & Seq

Genomic Coordinates Reverse (-)

31350836 .. 31353078

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00190920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCAACGACGTCGACTTTAAATGAGGCGGAGTTCGAGTACTTGTTTAAGCTGCTGATGATCGGCGACTCCGGCGTCGGCAAGAGCACCCTCCTCTTGAGTTTCACTTCCAATACCTTTGAAGATCTCTCTCCTACTATAGGTGTGGATTTTAAGGTGAAGCATGTTACTCTTGGGGGTAAAAAGTTGAAGCTGGCAATATGGGATACAGCTGGACAGGAAAGGTTTAGAACTCTTACTAGTTCCTACTACAGAGGAGCTCAAGGCATAATCATGGTGTATGATGTAACGCGACGGGACACATTTACAAATTTATCTGATATATGGGCTAAAGAAATTGACCTGTATTCCACAAGCCCAGATTGCATCAAAATGCTTGTTGGAAACAAGGTTGATAAGGAAAGTGAAAGGGTTGTTAGCAAAAAAGAGGGGATGGACTTTGCAAGAGAATATGGATGCCTTTTTCTTGAGTGTAGTGCAAAAACACGAATAAATGTAGAGCAATGCTTCGAGGAACTTGTCCTAAAGATCTTGGAGACACCCAGTCTCCTGGCAGAGGGCTCAGCAGGTGTGAAAAGGAATAATATCTTCAAACAAAAACCTCAGTCTGAAGTGCCAACAGGCGGCTGTTGCTCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

213

Amino Acids

23.8

Weight (kDa)

5.99

Isoelectric Point (pI)

28.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	15 - 174	1.6e-17	ADP-ribosylation factor family
Ras	PF00071	17 - 178	4.6e-58	Ras family
Roc	PF08477	17 - 132	8.3e-31	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43890 AT1G43890 AT1G43890
fragaria_vesca	FvH4_1g24410 FvH4_2g15140
malus_domestica	MD00G1163000.v1.1 MD01G1005500.v1.1 MD05G1010800.v1.1 MD10G1009500.v1.1
prunus_persica	Prupe.4G271600_v2.0.a1 Prupe.4G271600_v2.0.a1 Prupe.8G013500_v2.0.a1
pyrus_communis	pycom05g00580 pycom10g00570 pycom15g30450
rosa_chinensis	RchiOBHm_Chr2g0121291 RchiOBHm_Chr6g0277801
rosa_laevigata	RLG00000013268 RLG00000018616
rosa_multiflora	Rmu_sc0000079.1_g000029
rosa_roxburghii	Rroxscaffold_7G00190920
rosa_rugosa	Rorug02G0233100 Rorug02G0233200 Rorug06G0111200
rosa_samantha	Rh2AG290000 Rh2DG314800 Rh6AG222100 Rh6BG225500 Rh6CG228200 Rh6DG219200
rosa_wichuraiana	Rw2G023250 Rw6G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	557
AasI	GACNNNNNNGTC	1 cut(s)	74
AatII	GACGTC	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	557
AccI	GTMKAC	1 cut(s)	14
AccII	CGCG	1 cut(s)	292
AciI	CCGC	2 cut(s)	29, 624
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	630
AcyI	GRCGYC	2 cut(s)	11, 75
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	3 cut(s)	140, 556, 623
AgsI	TTSAA	3 cut(s)	122, 190, 592
AhdI	GACNNNNNGTC	1 cut(s)	543
AhlI	ACTAGT	1 cut(s)	239
AjnI	CCWGG	1 cut(s)	549
AluBI	AGCT	4 cut(s)	52, 193, 212, 260
AluI	AGCT	4 cut(s)	52, 193, 212, 260
Alw21I	GWGCWC	2 cut(s)	89, 262
Alw26I	GTCTC	2 cut(s)	530, 551
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	169
BanII	GRGCYC	2 cut(s)	262, 563
Bbv12I	GWGCWC	2 cut(s)	89, 262
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	1 cut(s)	427
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	551
BciVI	GTATCC	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	530, 551
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	2 cut(s)	138, 250
BfuAI	ACCTGC	1 cut(s)	557
BfuI	GTATCC	1 cut(s)	199
BglII	AGATCT	2 cut(s)	124, 528
BisI	GCNGC	2 cut(s)	53, 625
BlpI	GCTNAGC	1 cut(s)	562
BlsI	GCNGC	2 cut(s)	54, 626
BmcAI	AGTACT	1 cut(s)	41
Bme1390I	CCNGG	1 cut(s)	551
BmeRI	GACNNNNNGTC	1 cut(s)	543
BmrFI	CCNGG	1 cut(s)	551
BmrI	ACTGGG	1 cut(s)	537
BmsI	GCATC	2 cut(s)	375, 446
BmuI	ACTGGG	1 cut(s)	537
Bpu1102I	GCTNAGC	1 cut(s)	562
BpuEI	CTTGAG	3 cut(s)	118, 246, 488
BsaHI	GRCGYC	2 cut(s)	11, 75
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 531, 561
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 556, 623
Bse1I	ACTGG	1 cut(s)	543
Bse3DI	GCAATG	1 cut(s)	509
BseBI	CCWGG	1 cut(s)	551
BseGI	GGATG	2 cut(s)	438, 461
BseLI	CCNNNNNNNGG	3 cut(s)	140, 556, 623
BseMI	GCAATG	1 cut(s)	509
BseMII	CTCAG	2 cut(s)	576, 617
BseNI	ACTGG	1 cut(s)	543
BseRI	GAGGAG	2 cut(s)	83, 270
BseXI	GCAGC	1 cut(s)	39
Bsh1236I	CGCG	1 cut(s)	292
BsiHKAI	GWGCWC	2 cut(s)	89, 262
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	3 cut(s)	140, 556, 623
BsmAI	GTCTC	2 cut(s)	530, 551
BsmFI	GGGAC	1 cut(s)	311
Bsp1286I	GDGCHC	3 cut(s)	89, 262, 563
Bsp143I	GATC	3 cut(s)	60, 124, 528
Bsp1720I	GCTNAGC	1 cut(s)	562
BspACI	CCGC	2 cut(s)	29, 624
BspCNI	CTCAG	2 cut(s)	575, 616
BspFNI	CGCG	1 cut(s)	292
BspMI	ACCTGC	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	543
BssMI	GATC	3 cut(s)	60, 124, 528
BssNI	GRCGYC	2 cut(s)	11, 75
Bst2UI	CCWGG	1 cut(s)	551
BstACI	GRCGYC	2 cut(s)	11, 75
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	2 cut(s)	562, 603
BstENI	CCTNNNNNAGG	2 cut(s)	138, 554
BstF5I	GGATG	2 cut(s)	438, 461
BstFNI	CGCG	1 cut(s)	292
BstKTI	GATC	3 cut(s)	63, 127, 531
BstMAI	GTCTC	2 cut(s)	530, 551
BstMBI	GATC	3 cut(s)	60, 124, 528
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 363, 630
BstNI	CCWGG	1 cut(s)	551
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	549
BstSFI	CTRYAG	2 cut(s)	138, 250
BstUI	CGCG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	39
BstX2I	RGATCY	2 cut(s)	124, 528
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	2 cut(s)	124, 528
BsuI	GTATCC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	438, 461
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	1 cut(s)	195
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	2 cut(s)	164, 274
CviJI	RGCY	8 cut(s)	52, 193, 212, 260, 329, 357, 561, 627
CviKI_1	RGCY	8 cut(s)	52, 193, 212, 260, 329, 357, 561, 627
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	562, 603
DpnI	GATC	3 cut(s)	62, 126, 530
DpnII	GATC	3 cut(s)	60, 124, 528
DraI	TTTAAA	1 cut(s)	21
DrdI	GACNNNNNNGTC	1 cut(s)	74
DriI	GACNNNNNGTC	1 cut(s)	543
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1105I	GACNNNNNGTC	1 cut(s)	543
EciI	GGCGGA	1 cut(s)	44
Ecl136II	GAGCTC	1 cut(s)	260
Eco24I	GRGCYC	2 cut(s)	262, 563
Eco53kI	GAGCTC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	630
EcoICRI	GAGCTC	1 cut(s)	260
EcoNI	CCTNNNNNAGG	2 cut(s)	138, 554
EcoRII	CCWGG	1 cut(s)	549
EcoT38I	GRGCYC	2 cut(s)	262, 563
FaeI	CATG	2 cut(s)	167, 277
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	2 cut(s)	163, 273
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	53, 625
FokI	GGATG	2 cut(s)	445, 468
FriOI	GRGCYC	2 cut(s)	262, 563
Fsp4HI	GCNGC	2 cut(s)	53, 625
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	2 cut(s)	53, 625
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	64
Hin1I	GRCGYC	2 cut(s)	11, 75
Hin1II	CATG	2 cut(s)	167, 277
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	319, 610
Hpy188III	TCNNGA	2 cut(s)	97, 467
Hpy8I	GTNNAC	1 cut(s)	15
Hpy99I	CGWCG	4 cut(s)	13, 16, 80, 297
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	3 cut(s)	366, 443, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 363, 630
HpyF3I	CTNAG	2 cut(s)	562, 603
HpySE526I	ACGT	1 cut(s)	11
Hsp92I	GRCGYC	2 cut(s)	11, 75
Hsp92II	CATG	2 cut(s)	167, 277
Kzo9I	GATC	3 cut(s)	60, 124, 528
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	1 cut(s)	39
LweI	GCATC	2 cut(s)	375, 446
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	2 cut(s)	166, 286
MalI	GATC	3 cut(s)	62, 126, 530
MboI	GATC	3 cut(s)	60, 124, 528
MboII	GAAGA	2 cut(s)	134, 580
MflI	RGATCY	2 cut(s)	124, 528
MhlI	GDGCHC	3 cut(s)	89, 262, 563
MluCI	AATT	2 cut(s)	310, 336
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	8 cut(s)	19, 101, 104, 248, 421, 505, 550, 612
MseI	TTAA	3 cut(s)	20, 48, 153
MslI	CAYNNNNRTG	2 cut(s)	272, 371
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	551
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	3 cut(s)	72, 363, 630
NdeII	GATC	3 cut(s)	60, 124, 528
NlaIII	CATG	2 cut(s)	167, 277
NspI	RCATGY	1 cut(s)	167
PaqCI	CACCTGC	1 cut(s)	557
PkrI	GCNGC	2 cut(s)	54, 626
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	549
PspGI	CCWGG	1 cut(s)	549
PsuI	RGATCY	2 cut(s)	124, 528
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	2 cut(s)	272, 371
SacI	GAGCTC	1 cut(s)	262
SalI	GTCGAC	1 cut(s)	13
SaqAI	TTAA	3 cut(s)	20, 48, 153
SatI	GCNGC	2 cut(s)	53, 625
Sau3AI	GATC	3 cut(s)	60, 124, 528
ScaI	AGTACT	1 cut(s)	41
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	3 cut(s)	89, 262, 563
SfaNI	GCATC	2 cut(s)	375, 446
SfcI	CTRYAG	2 cut(s)	138, 250
SmiMI	CAYNNNNRTG	2 cut(s)	272, 371
SmlI	CTYRAG	3 cut(s)	97, 261, 467
SmoI	CTYRAG	3 cut(s)	97, 261, 467
SpeI	ACTAGT	1 cut(s)	239
Sse9I	AATT	2 cut(s)	310, 336
SsiI	CCGC	2 cut(s)	29, 624
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	549
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	3 cut(s)	14, 36, 510
TasI	AATT	2 cut(s)	310, 336
TatI	WGTACW	1 cut(s)	39
TauI	GCSGC	1 cut(s)	627
Tru1I	TTAA	3 cut(s)	20, 48, 153
Tru9I	TTAA	3 cut(s)	20, 48, 153
TseI	GCWGC	1 cut(s)	52
XagI	CCTNNNNNAGG	2 cut(s)	138, 554
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	14
XspI	CTAG	1 cut(s)	240
ZraI	GACGTC	1 cut(s)	12
ZrmI	AGTACT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.