pycom05g08150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0017374
Physical Location & Seq
Forward (+)
10876212 .. 10876856
645 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g08150.2

Sequence Viewer

Length: 528 bp
ATGCGTGTGATAACCTTCTCACGTTCCTCCTCTGCCAGATGTAGATTTATGGCCATCTTCTTTCTGTTATGCTCCAAAGTTGGCAGTATATACTGCTTGACACCATATATTTGTAAGAACTTCACCAAGTCTTTGCCCACGAATTGCGGGCCGTTTAGTGGTAGTCATGGGCTCAGTTTTTACCTACTTAGTGAAGTAGTCGGTAGGCACGATCATCATGCCCTTGCCCCAGTAGCGGGCATCATAGGCCCTACCAGGAAGCCATGGGCTTATCTGCAGGTGGAGTTCGTTGACAGGCAGTACGGGTACAGGCTTGAAGCGTTGGCAGCTATCGCACTTTTGAACAAATTCCTTAGCATCTTGATACACGGTGGCGGCCTCTTGAGTGGTTTCCACAAACACCTTTATGGATCGAGCTTAGAACTTTCAAGTCCTAGGGAGGCGCTAGGCAACGTAGATGTGGGTCTGAAAAGGATATTCGAACGAGAATGTCGTTCCACATGTATTAGCGTGCCGCCTTTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.4

Weight (kDa)

9.42

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 268
Acc36I ACCTGC 1 cut(s) 268
AciI CCGC 4 cut(s) 147, 236, 375, 515
AclWI GGATC 1 cut(s) 418
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 347
AfaI GTAC 2 cut(s) 302, 308
AfiI CCNNNNNNNGG 3 cut(s) 158, 235, 236
AflIII ACRYGT 1 cut(s) 500
AgsI TTSAA 3 cut(s) 317, 343, 429
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 2 cut(s) 329, 417
AluI AGCT 2 cut(s) 329, 417
AlwI GGATC 1 cut(s) 418
AoxI GGCC 4 cut(s) 51, 149, 247, 376
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 347
Asp700I GAANNNNTTC 1 cut(s) 347
AspA2I CCTAGG 1 cut(s) 434
AspLEI GCGC 1 cut(s) 445
AspS9I GGNCC 2 cut(s) 149, 248
AsuHPI GGTGA 1 cut(s) 115
AsuII TTCGAA 1 cut(s) 480
AvrII CCTAGG 1 cut(s) 434
BalI TGGCCA 1 cut(s) 53
BanII GRGCYC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 338
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 136
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 1 cut(s) 256
BfaI CTAG 2 cut(s) 435, 446
BfmI CTRYAG 1 cut(s) 275
BfoI RGCGCY 1 cut(s) 446
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 3 cut(s) 327, 376, 515
BlnI CCTAGG 1 cut(s) 434
BlsI GCNGC 3 cut(s) 328, 377, 516
Bme1390I CCNGG 1 cut(s) 256
BmgT120I GGNCC 2 cut(s) 149, 248
BmrFI CCNGG 1 cut(s) 256
BmrI ACTGGG 1 cut(s) 224
BmsI GCATC 2 cut(s) 249, 366
BmuI ACTGGG 1 cut(s) 224
Bpu10I CCTNAGC 1 cut(s) 353
Bpu14I TTCGAA 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 403
BsaJI CCNNGG 2 cut(s) 263, 434
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 235, 236
Bse1I ACTGG 1 cut(s) 230
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 2 cut(s) 263, 434
BseLI CCNNNNNNNGG 3 cut(s) 158, 235, 236
BseMII CTCAG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 338
BshFI GGCC 4 cut(s) 53, 151, 249, 378
BslI CCNNNNNNNGG 3 cut(s) 158, 235, 236
BsnI GGCC 4 cut(s) 53, 151, 249, 378
Bsp119I TTCGAA 1 cut(s) 480
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 2 cut(s) 211, 410
Bsp19I CCATGG 1 cut(s) 263
BspACI CCGC 4 cut(s) 147, 236, 375, 515
BspANI GGCC 4 cut(s) 53, 151, 249, 378
BspCNI CTCAG 1 cut(s) 186
BspMAI CTGCAG 1 cut(s) 279
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 1 cut(s) 418
BspT104I TTCGAA 1 cut(s) 480
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 263, 434
BssMI GATC 2 cut(s) 211, 410
BssT1I CCWWGG 2 cut(s) 263, 434
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 371
BstBI TTCGAA 1 cut(s) 480
BstC8I GCNNGC 3 cut(s) 149, 238, 512
BstDEI CTNAG 4 cut(s) 173, 188, 353, 418
BstDSI CCRYGG 1 cut(s) 263
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 2 cut(s) 214, 413
BstMBI GATC 2 cut(s) 211, 410
BstMWI GCNNNNNNNGC 4 cut(s) 233, 246, 326, 332
BstNI CCWGG 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 504
BstSCI CCNGG 1 cut(s) 254
BstSFI CTRYAG 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 338
BsuRI GGCC 4 cut(s) 53, 151, 249, 378
BtgI CCRYGG 1 cut(s) 263
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 3 cut(s) 149, 238, 512
CfoI GCGC 1 cut(s) 445
Cfr13I GGNCC 2 cut(s) 149, 248
Csp6I GTAC 2 cut(s) 301, 307
CviAII CATG 4 cut(s) 167, 218, 264, 501
CviQI GTAC 2 cut(s) 301, 307
DdeI CTNAG 4 cut(s) 173, 188, 353, 418
DpnI GATC 2 cut(s) 213, 412
DpnII GATC 2 cut(s) 211, 410
EaeI YGGCCR 1 cut(s) 51
Eco130I CCWWGG 2 cut(s) 263, 434
Eco24I GRGCYC 1 cut(s) 174
EcoO109I RGGNCCY 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 2 cut(s) 263, 434
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 2 cut(s) 263, 434
FaeI CATG 4 cut(s) 170, 221, 267, 504
FatI CATG 4 cut(s) 166, 217, 263, 500
FauI CCCGC 2 cut(s) 140, 229
Fnu4HI GCNGC 3 cut(s) 327, 376, 515
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 3 cut(s) 327, 376, 515
FspBI CTAG 2 cut(s) 435, 446
GlaI GCGC 1 cut(s) 444
GluI GCNGC 3 cut(s) 327, 376, 515
HaeII RGCGCY 1 cut(s) 446
HaeIII GGCC 4 cut(s) 53, 151, 249, 378
HhaI GCGC 1 cut(s) 445
Hin1II CATG 4 cut(s) 170, 221, 267, 504
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 468
Hpy188III TCNNGA 2 cut(s) 361, 382
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4IV ACGT 2 cut(s) 22, 453
HpyCH4V TGCA 1 cut(s) 277
HpyF10VI GCNNNNNNNGC 4 cut(s) 233, 246, 326, 332
HpyF3I CTNAG 4 cut(s) 173, 188, 353, 418
HpySE526I ACGT 2 cut(s) 22, 453
Hsp92II CATG 4 cut(s) 170, 221, 267, 504
HspAI GCGC 1 cut(s) 443
Kzo9I GATC 2 cut(s) 211, 410
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 7 cut(s) 49, 241, 243, 263, 268, 280, 295
Lsp1109I GCAGC 1 cut(s) 338
LweI GCATC 2 cut(s) 249, 366
MaeI CTAG 2 cut(s) 435, 446
MaeII ACGT 2 cut(s) 22, 453
MalI GATC 2 cut(s) 213, 412
MboI GATC 2 cut(s) 211, 410
MboII GAAGA 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 2 cut(s) 142, 347
MluNI TGGCCA 1 cut(s) 53
MnlI CCTC 4 cut(s) 37, 40, 389, 433
Mox20I TGGCCA 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 347
MscI TGGCCA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 405
Msp20I TGGCCA 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 256
MvaI CCWGG 1 cut(s) 256
MwoI GCNNNNNNNGC 4 cut(s) 233, 246, 326, 332
NcoI CCATGG 1 cut(s) 263
NdeII GATC 2 cut(s) 211, 410
NlaIII CATG 4 cut(s) 170, 221, 267, 504
NspI RCATGY 1 cut(s) 504
NspV TTCGAA 1 cut(s) 480
PaqCI CACCTGC 1 cut(s) 268
PciI ACATGT 1 cut(s) 500
PcsI WCGNNNNNNNCGW 2 cut(s) 207, 490
PdmI GAANNNNTTC 1 cut(s) 347
PkrI GCNGC 3 cut(s) 328, 377, 516
PscI ACATGT 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspPI GGNCC 2 cut(s) 149, 248
PstI CTGCAG 1 cut(s) 279
RsaI GTAC 2 cut(s) 302, 308
RsaNI GTAC 2 cut(s) 301, 307
RseI CAYNNNNRTG 1 cut(s) 405
SatI GCNGC 3 cut(s) 327, 376, 515
Sau3AI GATC 2 cut(s) 211, 410
Sau96I GGNCC 2 cut(s) 149, 248
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 1 cut(s) 174
SetI ASST 8 cut(s) 17, 25, 186, 282, 331, 405, 419, 456
SfaNI GCATC 2 cut(s) 249, 366
SfcI CTRYAG 1 cut(s) 275
SfuI TTCGAA 1 cut(s) 480
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 2 cut(s) 142, 347
SsiI CCGC 4 cut(s) 147, 236, 375, 515
SspMI CTAG 2 cut(s) 435, 446
StyD4I CCNGG 1 cut(s) 254
StyI CCWWGG 2 cut(s) 263, 434
TaaI ACNGT 1 cut(s) 371
TaiI ACGT 2 cut(s) 25, 456
TaqI TCGA 2 cut(s) 413, 480
TasI AATT 2 cut(s) 142, 347
TauI GCSGC 2 cut(s) 378, 517
TseI GCWGC 1 cut(s) 326
XapI RAATTY 1 cut(s) 347
XceI RCATGY 1 cut(s) 504
XmaJI CCTAGG 1 cut(s) 434
XmnI GAANNNNTTC 1 cut(s) 347
XspI CTAG 2 cut(s) 435, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.