pycom13g18790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0017374
Physical Location & Seq
Forward (+)
14787546 .. 14788377
832 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g18790.4

Sequence Viewer

Length: 624 bp
ATGATTGCTTCTAAGCCAAATGCCAAAGAGAAAAGAGTTTCACCGGTTGCTCGTCTTTTGGTGGTGCAATATGCCCATAAACATCCAAGGAGTTCGTCTGTCGAGAATCATCTTGTTGGACGCTTCGGCCTGCTTATTGCCTTGAGGATATCTTGGCGTGGACATGTGCTGCTTGATGCCATATTTTTGGAAGAACTTCGCCAAATCTTTGCCCATGAATTACTGGCCATTGGCGGTGATGATGGATTGAAAGACGCTAAATCAGCAAATGATGTTCCTCTATGTGAAGCGCTCTATGTCCATCTGAGTCATGGTTGTCATGGGCTTTGCTTCTACCCATTTGGTGAAGTAATCGGTTGCCACGATCATCATGACTCGTCTGTGGGTGTAGCTTGCTGGCAGGTAATGTTGGTACCGACTTGTAGCATTGGTAGCGGTCACACTTTTCCTTTTGCGCTAACGATCGGCCTCCGGAGTGATTTCCACAAACGCCTTTGTGGATTAAGCTTAGAACCTTTAGGTCATCGGGAGGCGCTAGGCAGCAGAGATGTACTAGCGTGCTGCCTTTATTTGGAGCTTTCTAAACTCCAACCTTTCCATAAGTCACCCTGTTGTGTCGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
DUF223 Rep_fac-A_C

Protein Analysis

208

Amino Acids

22.76

Weight (kDa)

7.64

Isoelectric Point (pI)

51.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 391
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 412
AccIII TCCGGA 1 cut(s) 471
AciI CCGC 2 cut(s) 234, 435
AcoI YGGCCR 1 cut(s) 225
AfaI GTAC 2 cut(s) 414, 552
AfeI AGCGCT 1 cut(s) 291
AfiI CCNNNNNNNGG 1 cut(s) 571
AflIII ACRYGT 1 cut(s) 163
AgeI ACCGGT 1 cut(s) 43
AgsI TTSAA 1 cut(s) 250
AluBI AGCT 3 cut(s) 392, 507, 577
AluI AGCT 3 cut(s) 392, 507, 577
Aor13HI TCCGGA 1 cut(s) 471
Aor51HI AGCGCT 1 cut(s) 291
AoxI GGCC 3 cut(s) 127, 225, 466
ApeKI GCWGC 3 cut(s) 169, 540, 561
AsiGI ACCGGT 1 cut(s) 43
Asp700I GAANNNNTTC 1 cut(s) 195
Asp718I GGTACC 1 cut(s) 412
AspLEI GCGC 3 cut(s) 292, 457, 535
AsuHPI GGTGA 4 cut(s) 33, 248, 356, 597
BalI TGGCCA 1 cut(s) 227
BanI GGYRCC 1 cut(s) 412
BbvI GCAGC 3 cut(s) 156, 548, 552
BccI CCATC 2 cut(s) 236, 309
BfaI CTAG 2 cut(s) 536, 554
BfoI RGCGCY 2 cut(s) 293, 536
BfuAI ACCTGC 1 cut(s) 391
BisI GCNGC 3 cut(s) 170, 541, 562
BlsI GCNGC 3 cut(s) 171, 542, 563
BmiI GGNNCC 1 cut(s) 414
BmsI GCATC 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 86
BsaWI WCCGGW 2 cut(s) 43, 471
Bsc4I CCNNNNNNNGG 1 cut(s) 571
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 228
BseAI TCCGGA 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 86
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 571
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 228
BseXI GCAGC 3 cut(s) 156, 548, 552
Bsh1285I CGRYCG 1 cut(s) 465
BshFI GGCC 3 cut(s) 129, 227, 468
BshNI GGYRCC 1 cut(s) 412
BshTI ACCGGT 1 cut(s) 43
BsiEI CGRYCG 1 cut(s) 465
BsiSI CCGG 2 cut(s) 44, 472
BslI CCNNNNNNNGG 1 cut(s) 571
BsnI GGCC 3 cut(s) 129, 227, 468
Bsp13I TCCGGA 1 cut(s) 471
Bsp143I GATC 2 cut(s) 364, 462
BspACI CCGC 2 cut(s) 234, 435
BspANI GGCC 3 cut(s) 129, 227, 468
BspCNI CTCAG 1 cut(s) 297
BspEI TCCGGA 1 cut(s) 471
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 414
BspMI ACCTGC 1 cut(s) 391
BspT107I GGYRCC 1 cut(s) 412
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 1 cut(s) 228
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 2 cut(s) 364, 462
BssT1I CCWWGG 1 cut(s) 86
BstC8I GCNNGC 4 cut(s) 131, 394, 398, 559
BstDEI CTNAG 3 cut(s) 12, 305, 508
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 2 cut(s) 293, 536
BstHHI GCGC 3 cut(s) 292, 457, 535
BstKTI GATC 2 cut(s) 367, 465
BstMBI GATC 2 cut(s) 364, 462
BstMCI CGRYCG 1 cut(s) 465
BstMWI GCNNNNNNNGC 2 cut(s) 263, 432
BstNSI RCATGY 1 cut(s) 167
BstV1I GCAGC 3 cut(s) 156, 548, 552
BstXI CCANNNNNNTGG 1 cut(s) 187
BsuRI GGCC 3 cut(s) 129, 227, 468
BtsCI GGATG 1 cut(s) 82
BveI ACCTGC 1 cut(s) 391
Cac8I GCNNGC 4 cut(s) 131, 394, 398, 559
CciI TCATGA 1 cut(s) 370
CfoI GCGC 3 cut(s) 292, 457, 535
Cfr10I RCCGGY 1 cut(s) 43
CseI GACGC 2 cut(s) 129, 263
Csp6I GTAC 2 cut(s) 413, 551
CspAI ACCGGT 1 cut(s) 43
CviAII CATG 5 cut(s) 164, 215, 311, 320, 371
CviJI RGCY 8 cut(s) 16, 129, 227, 325, 392, 468, 507, 577
CviKI_1 RGCY 8 cut(s) 16, 129, 227, 325, 392, 468, 507, 577
CviQI GTAC 2 cut(s) 413, 551
DdeI CTNAG 3 cut(s) 12, 305, 508
DpnI GATC 2 cut(s) 366, 464
DpnII GATC 2 cut(s) 364, 462
EaeI YGGCCR 1 cut(s) 225
Eco130I CCWWGG 1 cut(s) 86
Eco32I GATATC 1 cut(s) 150
Eco47III AGCGCT 1 cut(s) 291
EcoRV GATATC 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 5 cut(s) 167, 218, 314, 323, 374
FatI CATG 5 cut(s) 163, 214, 310, 319, 370
Fnu4HI GCNGC 3 cut(s) 170, 541, 562
FokI GGATG 1 cut(s) 69
Fsp4HI GCNGC 3 cut(s) 170, 541, 562
FspBI CTAG 2 cut(s) 536, 554
GlaI GCGC 3 cut(s) 291, 456, 534
GluI GCNGC 3 cut(s) 170, 541, 562
HaeII RGCGCY 2 cut(s) 293, 536
HaeIII GGCC 3 cut(s) 129, 227, 468
HapII CCGG 2 cut(s) 44, 472
HgaI GACGC 2 cut(s) 129, 263
HhaI GCGC 3 cut(s) 292, 457, 535
Hin1II CATG 5 cut(s) 167, 218, 314, 323, 374
Hin6I GCGC 3 cut(s) 290, 455, 533
HinP1I GCGC 3 cut(s) 290, 455, 533
HindIII AAGCTT 1 cut(s) 505
HinfI GANTC 3 cut(s) 106, 307, 374
HpaII CCGG 2 cut(s) 44, 472
HphI GGTGA 4 cut(s) 33, 248, 356, 597
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 4 cut(s) 103, 371, 472, 527
Hpy8I GTNNAC 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 432
HpyF3I CTNAG 3 cut(s) 12, 305, 508
Hsp92II CATG 5 cut(s) 167, 218, 314, 323, 374
HspAI GCGC 3 cut(s) 290, 455, 533
Kpn2I TCCGGA 1 cut(s) 471
KpnI GGTACC 1 cut(s) 416
Kzo9I GATC 2 cut(s) 364, 462
LmnI GCTCC 1 cut(s) 574
LpnPI CCDG 6 cut(s) 57, 143, 209, 382, 386, 485
Lsp1109I GCAGC 3 cut(s) 156, 548, 552
LweI GCATC 1 cut(s) 166
MaeI CTAG 2 cut(s) 536, 554
MaeIII GTNAC 2 cut(s) 437, 603
MalI GATC 2 cut(s) 366, 464
MboI GATC 2 cut(s) 364, 462
MboII GAAGA 1 cut(s) 203
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 1 cut(s) 218
MluNI TGGCCA 1 cut(s) 227
MlyI GAGTC 2 cut(s) 316, 368
MmeI TCCRAC 2 cut(s) 97, 613
MnlI CCTC 4 cut(s) 138, 288, 479, 523
Mox20I TGGCCA 1 cut(s) 227
MroI TCCGGA 1 cut(s) 471
MroXI GAANNNNTTC 1 cut(s) 195
MscI TGGCCA 1 cut(s) 227
MseI TTAA 1 cut(s) 503
Msp20I TGGCCA 1 cut(s) 227
MspI CCGG 2 cut(s) 44, 472
MwoI GCNNNNNNNGC 2 cut(s) 263, 432
NdeII GATC 2 cut(s) 364, 462
NlaIII CATG 5 cut(s) 167, 218, 314, 323, 374
NlaIV GGNNCC 1 cut(s) 414
NmuCI GTSAC 2 cut(s) 437, 603
NspI RCATGY 1 cut(s) 167
PagI TCATGA 1 cut(s) 370
PciI ACATGT 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 106
PinAI ACCGGT 1 cut(s) 43
PkrI GCNGC 3 cut(s) 171, 542, 563
Ple19I CGATCG 1 cut(s) 465
PleI GAGTC 2 cut(s) 315, 368
PpsI GAGTC 2 cut(s) 315, 368
PscI ACATGT 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 414
PvuI CGATCG 1 cut(s) 465
RsaI GTAC 2 cut(s) 414, 552
RsaNI GTAC 2 cut(s) 413, 551
SaqAI TTAA 1 cut(s) 503
SatI GCNGC 3 cut(s) 170, 541, 562
Sau3AI GATC 2 cut(s) 364, 462
SchI GAGTC 2 cut(s) 316, 368
SetI ASST 7 cut(s) 394, 405, 509, 517, 523, 579, 595
SfaNI GCATC 1 cut(s) 166
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 1 cut(s) 218
SsiI CCGC 2 cut(s) 234, 435
SspMI CTAG 2 cut(s) 536, 554
StyI CCWWGG 1 cut(s) 86
TaqI TCGA 1 cut(s) 102
TasI AATT 1 cut(s) 218
TatI WGTACW 1 cut(s) 550
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 1 cut(s) 503
Tru9I TTAA 1 cut(s) 503
TseFI GTSAC 2 cut(s) 437, 603
TseI GCWGC 3 cut(s) 169, 540, 561
Tsp45I GTSAC 2 cut(s) 437, 603
TspDTI ATGAA 1 cut(s) 231
XceI RCATGY 1 cut(s) 167
XcmI CCANNNNNNNNNTGG 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 2 cut(s) 536, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.