Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011114

Physical Location & Seq

Genomic Coordinates Forward (+)

14033603 .. 14034154

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAATGAAATTTCACCACGCCCGCCGTCGCCGCCACTCGCCATGGCTTCTTCCATGCTGCCCATTTCTCTTCTCCTTCTTGTACTCCTAGCCCTTCTTCTAAAACCCACAAACGCCAACCCCATTGACGAATTGTTACCCCGAATTGAATCCCAGTTCTACACCAGAGCCAAGGTCCCCGACTTTCCTGACTCCCCCACGCGCAGCACAAACGGGTCTCCCATACTCGCGACGGCGACGGCGACGCTCCCGAATTTACAGAACCCAATGGCGAGGAAAAGCAAAGTCGTAATCTTTGGGAACGCGACGCTCTCGAGCCCCAACCGGACCTTTGCGCTCGGCTTCTTCTCCACCAACGACGAAAGTCCCAACTGGTACTTGGGTATTTGGTATCCTCTGATTCCGGTCCCGACTTATGTCTGGGTCGCGAACCGGGACCGACCCGTCAAGAATCTCACCTCCTCGAGCTTGGAAATCACCGGGTCGGCGACAGCCGTGGTGAAATTTCATTCATTTTGTTTCAGTATTGGAAGTTTTGCTTTCCGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

184

Amino Acids

20.0

Weight (kDa)

9.66

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00340 AT4G00340
fragaria_vesca	FvH4_7g14760
malus_domestica	MD01G1066300.v1.1
prunus_persica	Prupe.2G173300_v2.0.a1
pyrus_communis	pycom01g09580 pycom05g10610
rosa_chinensis	RchiOBHm_Chr1g0356701
rosa_laevigata	RLG00000028086
rosa_multiflora	Rmu_sc0000517.1_g000017 Rmu_sc0020364.1_g000001 Rmu_sc0033799.1_g000001 Rmu_sc0033800.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299390
rosa_rugosa	Rorug01G0250900
rosa_samantha	Rh1AG264800 Rh1BG232300 Rh1CG248500 Rh1DG259900
rosa_wichuraiana	Rw1G023430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	443
AccII	CGCG	4 cut(s)	202, 230, 305, 428
AciI	CCGC	2 cut(s)	23, 32
AcsI	RAATTY	3 cut(s)	9, 253, 503
AfaI	GTAC	2 cut(s)	84, 377
AgsI	TTSAA	1 cut(s)	149
AluBI	AGCT	1 cut(s)	468
AluI	AGCT	1 cut(s)	468
Alw26I	GTCTC	1 cut(s)	222
Ama87I	CYCGRG	2 cut(s)	313, 463
ApeKI	GCWGC	2 cut(s)	58, 204
ApoI	RAATTY	3 cut(s)	9, 253, 503
AspLEI	GCGC	2 cut(s)	204, 337
AspS9I	GGNCC	4 cut(s)	175, 327, 406, 436
AsuC2I	CCSGG	3 cut(s)	434, 481, 545
AsuHPI	GGTGA	4 cut(s)	6, 448, 469, 511
AvaI	CYCGRG	2 cut(s)	313, 463
AvaII	GGWCC	4 cut(s)	175, 327, 406, 436
BaeI	ACNNNNGTAYC	2 cut(s)	367, 400
BanII	GRGCYC	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	45, 216
BceAI	ACGGC	4 cut(s)	10, 249, 255, 479
BciVI	GTATCC	1 cut(s)	402
BcnI	CCSGG	3 cut(s)	434, 481, 545
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	1 cut(s)	89
BfuI	GTATCC	1 cut(s)	402
BisI	GCNGC	3 cut(s)	32, 59, 205
BlsI	GCNGC	3 cut(s)	33, 60, 206
Bme1390I	CCNGG	3 cut(s)	434, 481, 545
Bme18I	GGWCC	4 cut(s)	175, 327, 406, 436
BmeT110I	CYCGRG	2 cut(s)	313, 463
BmgT120I	GGNCC	4 cut(s)	175, 327, 406, 436
BmiI	GGNNCC	3 cut(s)	177, 408, 437
BmrFI	CCNGG	3 cut(s)	434, 481, 545
BmrI	ACTGGG	1 cut(s)	148
BmuI	ACTGGG	1 cut(s)	148
BoxI	GACNNNNGTC	2 cut(s)	363, 416
BpuMI	CCSGG	3 cut(s)	434, 481, 545
BsaI	GGTCTC	1 cut(s)	222
BsaJI	CCNNGG	4 cut(s)	42, 171, 495, 544
BsaWI	WCCGGW	2 cut(s)	324, 403
Bse1I	ACTGG	2 cut(s)	154, 377
BseDI	CCNNGG	4 cut(s)	42, 171, 495, 544
BseNI	ACTGG	2 cut(s)	154, 377
BseRI	GAGGAG	1 cut(s)	451
BseXI	GCAGC	2 cut(s)	45, 216
Bsh1236I	CGCG	4 cut(s)	202, 230, 305, 428
BsiHKCI	CYCGRG	2 cut(s)	313, 463
BsiSI	CCGG	5 cut(s)	325, 404, 433, 480, 544
BslFI	GGGAC	4 cut(s)	161, 351, 392, 449
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	4 cut(s)	161, 351, 392, 449
Bso31I	GGTCTC	1 cut(s)	222
BsoBI	CYCGRG	2 cut(s)	313, 463
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp19I	CCATGG	1 cut(s)	42
Bsp68I	TCGCGA	2 cut(s)	230, 428
BspACI	CCGC	2 cut(s)	23, 32
BspFNI	CGCG	4 cut(s)	202, 230, 305, 428
BspLI	GGNNCC	3 cut(s)	177, 408, 437
BspTNI	GGTCTC	1 cut(s)	222
BsrI	ACTGG	2 cut(s)	154, 377
BssECI	CCNNGG	4 cut(s)	42, 171, 495, 544
BssT1I	CCWWGG	2 cut(s)	42, 171
Bst6I	CTCTTC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	23
BstDSI	CCRYGG	2 cut(s)	42, 495
BstFNI	CGCG	4 cut(s)	202, 230, 305, 428
BstHHI	GCGC	2 cut(s)	204, 337
BstMAI	GTCTC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstPAI	GACNNNNGTC	2 cut(s)	363, 416
BstSCI	CCNGG	3 cut(s)	432, 479, 543
BstUI	CGCG	4 cut(s)	202, 230, 305, 428
BstV1I	GCAGC	2 cut(s)	45, 216
BsuI	GTATCC	1 cut(s)	402
BtgI	CCRYGG	2 cut(s)	42, 495
BtuMI	TCGCGA	2 cut(s)	230, 428
Cac8I	GCNNGC	1 cut(s)	23
CfoI	GCGC	2 cut(s)	204, 337
Cfr13I	GGNCC	4 cut(s)	175, 327, 406, 436
CseI	GACGC	2 cut(s)	253, 316
Csp6I	GTAC	2 cut(s)	83, 376
CviAII	CATG	2 cut(s)	43, 55
CviJI	RGCY	7 cut(s)	47, 92, 170, 318, 342, 468, 494
CviKI_1	RGCY	7 cut(s)	47, 92, 170, 318, 342, 468, 494
CviQI	GTAC	2 cut(s)	83, 376
DrdI	GACNNNNNNGTC	1 cut(s)	443
DseDI	GACNNNNNNGTC	1 cut(s)	443
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco130I	CCWWGG	2 cut(s)	42, 171
Eco24I	GRGCYC	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	222
Eco47I	GGWCC	4 cut(s)	175, 327, 406, 436
Eco88I	CYCGRG	2 cut(s)	313, 463
EcoO109I	RGGNCCY	1 cut(s)	175
EcoT14I	CCWWGG	2 cut(s)	42, 171
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	2 cut(s)	42, 171
FaeI	CATG	2 cut(s)	46, 58
FaiI	YATR	4 cut(s)	44, 56, 224, 417
FalI	AAGNNNNNCTT	1 cut(s)	523
FaqI	GGGAC	4 cut(s)	161, 351, 392, 449
FatI	CATG	2 cut(s)	42, 54
FauI	CCCGC	1 cut(s)	30
Fnu4HI	GCNGC	3 cut(s)	32, 59, 205
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	3 cut(s)	32, 59, 205
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	2 cut(s)	203, 336
GluI	GCNGC	3 cut(s)	32, 59, 205
HapII	CCGG	5 cut(s)	325, 404, 433, 480, 544
HgaI	GACGC	2 cut(s)	253, 316
HhaI	GCGC	2 cut(s)	204, 337
Hin1II	CATG	2 cut(s)	46, 58
Hin6I	GCGC	2 cut(s)	202, 335
HinP1I	GCGC	2 cut(s)	202, 335
HinfI	GANTC	4 cut(s)	149, 191, 400, 451
HpaII	CCGG	5 cut(s)	325, 404, 433, 480, 544
HphI	GGTGA	4 cut(s)	6, 448, 469, 511
Hpy188I	TCNGA	1 cut(s)	399
Hpy188III	TCNNGA	7 cut(s)	188, 229, 250, 313, 409, 427, 448
Hpy99I	CGWCG	6 cut(s)	31, 235, 241, 247, 310, 362
HpyAV	CCTTC	2 cut(s)	86, 104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
Hsp92II	CATG	2 cut(s)	46, 58
HspAI	GCGC	2 cut(s)	202, 335
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	9 cut(s)	167, 178, 201, 338, 358, 406, 417, 446, 493
Lsp1109I	GCAGC	2 cut(s)	45, 216
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	135
MboII	GAAGA	4 cut(s)	42, 62, 89, 337
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	5 cut(s)	9, 131, 144, 253, 503
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	4 cut(s)	267, 405, 469, 472
MspI	CCGG	5 cut(s)	325, 404, 433, 480, 544
MspR9I	CCNGG	3 cut(s)	434, 481, 545
MvnI	CGCG	4 cut(s)	202, 230, 305, 428
MwoI	GCNNNNNNNGC	1 cut(s)	31
NciI	CCSGG	3 cut(s)	434, 481, 545
NcoI	CCATGG	1 cut(s)	42
NlaIII	CATG	2 cut(s)	46, 58
NlaIV	GGNNCC	3 cut(s)	177, 408, 437
NmeAIII	GCCGAG	1 cut(s)	318
NruI	TCGCGA	2 cut(s)	230, 428
PaeR7I	CTCGAG	2 cut(s)	313, 463
PcsI	WCGNNNNNNNCGW	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	149, 400, 451
PkrI	GCNGC	3 cut(s)	33, 60, 206
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	175
PshAI	GACNNNNGTC	2 cut(s)	363, 416
Psp5II	RGGWCCY	1 cut(s)	175
PspN4I	GGNNCC	3 cut(s)	177, 408, 437
PspPI	GGNCC	4 cut(s)	175, 327, 406, 436
PspPPI	RGGWCCY	1 cut(s)	175
PspXI	VCTCGAGB	1 cut(s)	463
RruI	TCGCGA	2 cut(s)	230, 428
RsaI	GTAC	2 cut(s)	84, 377
RsaNI	GTAC	2 cut(s)	83, 376
SatI	GCNGC	3 cut(s)	32, 59, 205
Sau96I	GGNCC	4 cut(s)	175, 327, 406, 436
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	3 cut(s)	434, 481, 545
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	4 cut(s)	177, 332, 461, 470
Sfr274I	CTCGAG	2 cut(s)	313, 463
SinI	GGWCC	4 cut(s)	175, 327, 406, 436
SlaI	CTCGAG	2 cut(s)	313, 463
SmlI	CTYRAG	2 cut(s)	313, 463
SmoI	CTYRAG	2 cut(s)	313, 463
Sse9I	AATT	5 cut(s)	9, 131, 144, 253, 503
SsiI	CCGC	2 cut(s)	23, 32
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	3 cut(s)	432, 479, 543
StyI	CCWWGG	2 cut(s)	42, 171
TaqI	TCGA	2 cut(s)	314, 464
TaqII	GACCGA	1 cut(s)	453
TasI	AATT	5 cut(s)	9, 131, 144, 253, 503
TatI	WGTACW	1 cut(s)	82
TauI	GCSGC	1 cut(s)	34
TfiI	GAWTC	3 cut(s)	149, 400, 451
TseI	GCWGC	2 cut(s)	58, 204
TspDTI	ATGAA	4 cut(s)	17, 21, 497, 501
VpaK11BI	GGWCC	4 cut(s)	175, 327, 406, 436
XapI	RAATTY	3 cut(s)	9, 253, 503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XhoI	CTCGAG	2 cut(s)	313, 463
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.