Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020364.1

Orthogroup ID

OG0011114

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 801

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020364.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

gttggtacggcaagaggcattgcatatttacatgaggggtgtagagattccataatccattgtgatatcaaaccagaaaacattttgcttgattgtgattacacggcaaaggtgtcagattttgggttagcaaagctaattcacagagactttagtggagcattagctgctgatggtaatcatggctatacctatggctatgtagcgccagagtgcagacctggtgatccaatcaccacaaaagccgatgtttacagctatggaaagacattgatagaattacttggaggccatagaatgtgggaggcacctccatctgctggcggcagagagggtggaaatgaaataacagattcttggtgctttccttcgtgggcggcacagcagataattgatggcaatgtggtggctgtaattgatgatagacttgggagcaagtataaccttaaggaggcagagcgtgttgcattagtggcggtgtggtgcatacaggacgacgaggcaacaaggcctacaatggggatggtagtgacaatgttggaaggggttgtggaagtgactgttcctccagcaccaaagttgttacaagcgctggtttcaggggagtcattctgtggggtgaattccgattctggacacagtccatcgattgccagcgacaacttctctggttgtaatacgaaattatctagttgcggttcagagtcgtcacttggtaatgtctcttccttagtaaatgagaatgtgcatgaaaaccgaagaagttcagtgagctttactgtcaatactgaccatagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

266

Amino Acids

28.43

Weight (kDa)

4.89

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00340 AT4G00340
fragaria_vesca	FvH4_7g14760
malus_domestica	MD01G1066300.v1.1
prunus_persica	Prupe.2G173300_v2.0.a1
pyrus_communis	pycom01g09580 pycom05g10610
rosa_chinensis	RchiOBHm_Chr1g0356701
rosa_laevigata	RLG00000028086
rosa_multiflora	Rmu_sc0000517.1_g000017 Rmu_sc0020364.1_g000001 Rmu_sc0033799.1_g000001 Rmu_sc0033800.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299390
rosa_rugosa	Rorug01G0250900
rosa_samantha	Rh1AG264800 Rh1BG232300 Rh1CG248500 Rh1DG259900
rosa_wichuraiana	Rw1G023430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AccB7I	CCANNNNNTGG	1 cut(s)	320
AciI	CCGC	4 cut(s)	324, 377, 476, 696
AclWI	GGATC	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	622
AfaI	GTAC	1 cut(s)	7
AfeI	AGCGCT	1 cut(s)	591
AfiI	CCNNNNNNNGG	3 cut(s)	320, 451, 518
AflII	CTTAAG	1 cut(s)	446
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	5 cut(s)	136, 167, 258, 774, 798
AluI	AGCT	5 cut(s)	136, 167, 258, 774, 798
Alw26I	GTCTC	2 cut(s)	141, 727
AlwI	GGATC	1 cut(s)	221
Aor51HI	AGCGCT	1 cut(s)	591
AoxI	GGCC	2 cut(s)	289, 509
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	622
Asp700I	GAANNNNTTC	1 cut(s)	763
AspLEI	GCGC	2 cut(s)	208, 592
AsuHPI	GGTGA	3 cut(s)	226, 236, 631
BanI	GGYRCC	1 cut(s)	307
BarI	GAAGNNNNNNTAC	2 cut(s)	709, 741
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	5 cut(s)	167, 322, 389, 517, 652
BceAI	ACGGC	2 cut(s)	24, 120
BciT130I	CCWGG	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	141, 727
BfaI	CTAG	1 cut(s)	690
BfoI	RGCGCY	2 cut(s)	209, 593
BfrI	CTTAAG	1 cut(s)	446
BisI	GCNGC	3 cut(s)	168, 325, 378
BlsI	GCNGC	3 cut(s)	169, 326, 379
Bme1390I	CCNGG	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	552
Bsa29I	ATCGAT	1 cut(s)	647
BsaBI	GATNNNNATC	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	550, 580
Bsc4I	CCNNNNNNNGG	3 cut(s)	320, 451, 518
Bse3DI	GCAATG	2 cut(s)	18, 406
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	222
BseCI	ATCGAT	1 cut(s)	647
BseGI	GGATG	1 cut(s)	528
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	3 cut(s)	320, 451, 518
BseMI	GCAATG	2 cut(s)	18, 406
BseXI	GCAGC	1 cut(s)	154
BsgI	GTGCAG	1 cut(s)	235
BshFI	GGCC	2 cut(s)	291, 511
BshNI	GGYRCC	1 cut(s)	307
BshVI	ATCGAT	1 cut(s)	647
BslI	CCNNNNNNNGG	3 cut(s)	320, 451, 518
BsmAI	GTCTC	2 cut(s)	141, 727
BsnI	GGCC	2 cut(s)	291, 511
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	4 cut(s)	324, 377, 476, 696
BspANI	GGCC	2 cut(s)	291, 511
BspDI	ATCGAT	1 cut(s)	647
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	307
BspTI	CTTAAG	1 cut(s)	446
BsrDI	GCAATG	2 cut(s)	18, 406
BssMI	GATC	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	3 cut(s)	562, 641, 781
Bst6I	CTCTTC	1 cut(s)	730
BstAFI	CTTAAG	1 cut(s)	446
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	322, 655
BstDEI	CTNAG	1 cut(s)	730
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	1 cut(s)	528
BstH2I	RGCGCY	2 cut(s)	209, 593
BstHHI	GCGC	2 cut(s)	208, 592
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	2 cut(s)	141, 727
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 473
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	647
BsuRI	GGCC	2 cut(s)	291, 511
BsuTUI	ATCGAT	1 cut(s)	647
BtsCI	GGATG	1 cut(s)	528
BtsIMutI	CAGTG	1 cut(s)	774
Cac8I	GCNNGC	2 cut(s)	322, 655
CfoI	GCGC	2 cut(s)	208, 592
ClaI	ATCGAT	1 cut(s)	647
CsiI	ACCWGGT	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	3 cut(s)	32, 182, 749
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	1 cut(s)	730
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	730
EarI	CTCTTC	1 cut(s)	730
Eco147I	AGGCCT	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	67
Eco47III	AGCGCT	1 cut(s)	591
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	622
EcoRII	CCWGG	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	67
FaeI	CATG	3 cut(s)	35, 185, 752
FatI	CATG	3 cut(s)	31, 181, 748
Fnu4HI	GCNGC	3 cut(s)	168, 325, 378
FokI	GGATG	1 cut(s)	535
Fsp4HI	GCNGC	3 cut(s)	168, 325, 378
FspBI	CTAG	1 cut(s)	690
GlaI	GCGC	2 cut(s)	207, 591
GluI	GCNGC	3 cut(s)	168, 325, 378
GsuI	CTGGAG	1 cut(s)	552
HaeII	RGCGCY	2 cut(s)	209, 593
HaeIII	GGCC	2 cut(s)	291, 511
HhaI	GCGC	2 cut(s)	208, 592
Hin1II	CATG	3 cut(s)	35, 185, 752
Hin6I	GCGC	2 cut(s)	206, 590
HinP1I	GCGC	2 cut(s)	206, 590
HinfI	GANTC	5 cut(s)	47, 353, 605, 629, 704
HphI	GGTGA	3 cut(s)	226, 236, 631
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	118, 628, 703
Hpy188III	TCNNGA	1 cut(s)	633
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	1 cut(s)	500
HpyAV	CCTTC	2 cut(s)	378, 536
HpyCH4III	ACNGT	3 cut(s)	562, 641, 781
HpyCH4V	TGCA	5 cut(s)	23, 216, 467, 486, 748
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 473
HpyF3I	CTNAG	1 cut(s)	730
Hsp92II	CATG	3 cut(s)	35, 185, 752
HspAI	GCGC	2 cut(s)	206, 590
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	158, 432
Lsp1109I	GCAGC	1 cut(s)	154
MabI	ACCWGGT	1 cut(s)	220
MaeI	CTAG	1 cut(s)	690
MaeIII	GTNAC	4 cut(s)	529, 556, 582, 708
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	717, 771
MluCI	AATT	6 cut(s)	138, 278, 390, 414, 622, 683
MlyI	GAGTC	2 cut(s)	614, 713
MmeI	TCCRAC	1 cut(s)	519
MnlI	CCTC	9 cut(s)	8, 28, 281, 298, 321, 325, 445, 493, 576
MroXI	GAANNNNTTC	1 cut(s)	763
MseI	TTAA	1 cut(s)	447
MspCI	CTTAAG	1 cut(s)	446
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	167, 473
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	35, 185, 752
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	3 cut(s)	529, 556, 708
PceI	AGGCCT	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	763
PfeI	GAWTC	3 cut(s)	47, 353, 629
PflFI	GACNNNGTC	1 cut(s)	639
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	169, 326, 379
PleI	GAGTC	2 cut(s)	613, 712
PpsI	GAGTC	2 cut(s)	613, 712
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	309
PsyI	GACNNNGTC	1 cut(s)	639
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	3 cut(s)	168, 325, 378
Sau3AI	GATC	1 cut(s)	226
SchI	GAGTC	2 cut(s)	614, 713
ScrFI	CCNGG	1 cut(s)	222
SexAI	ACCWGGT	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	6 cut(s)	138, 278, 390, 414, 622, 683
SseBI	AGGCCT	1 cut(s)	511
SsiI	CCGC	4 cut(s)	324, 377, 476, 696
SspMI	CTAG	1 cut(s)	690
StuI	AGGCCT	1 cut(s)	511
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	562, 641, 781
TaqI	TCGA	1 cut(s)	647
TasI	AATT	6 cut(s)	138, 278, 390, 414, 622, 683
TauI	GCSGC	2 cut(s)	327, 380
TfiI	GAWTC	3 cut(s)	47, 353, 629
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	774
TseFI	GTSAC	3 cut(s)	529, 556, 708
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	3 cut(s)	529, 556, 708
TspDTI	ATGAA	2 cut(s)	357, 765
TspRI	CASTG	1 cut(s)	774
Tth111I	GACNNNGTC	1 cut(s)	639
Van91I	CCANNNNNTGG	1 cut(s)	320
Vha464I	CTTAAG	1 cut(s)	446
XagI	CCTNNNNNAGG	1 cut(s)	449
XapI	RAATTY	1 cut(s)	622
XmnI	GAANNNNTTC	1 cut(s)	763
XspI	CTAG	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.