Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012926

Physical Location & Seq

Genomic Coordinates Reverse (-)

15683614 .. 15684983

Gene Structure 1370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAAGCCCTGATTAGCTCGTCTTCTCCTAAAATCACGTTGTCCGCTTCTTCCTTCTCCGTTTTCTCTCCCCGAAAGTCCCTCCCTTCACGGCCCTTTCAGCTTCCGCTCGCCTCCAAAGGAAACGAGAATGAATCAAATCCGAAGTCGGATTCCAAAGAAATCAATCGCCTTCCGATTCTCAGCAATAGCCTCCTCTCCCTCTCACCACTCTCCAAGGACGCAGCAATGGGACTGGTGATGGGTGCGGCGACAGGAAGAGGGTGGACTACGGGTTCTGGAATGGAAGGCCCTCCTGCCCCTCCTGGGGTTCAGACACAAAGCACAGAGAATGTCTCCACTTTTCCCTGGTCTCTCTTCACCAAATCGCCTCGCCGGAGGATGCTTGTAGCTTTCACTTGTAACATTTGTGGGCAAAGGACAACGCGGGCAATTAACCCCCATGCTTACACTGACGGCACCGTCTTTGTGCAGTGTTGTGGATGCAATGCATTTCATAAGCTTGTGGATCGATTTGAACCTGTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006986 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0033036 GO:0033365 GO:0034613 GO:0035966 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

177

Amino Acids

18.88

Weight (kDa)

9.5

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	130 - 172	4.5e-14	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27280
fragaria_vesca	FvH4_2g15740
malus_domestica	MD05G1126400.v1.1 MD10G1129200.v1.1
prunus_persica	Prupe.8G169800_v2.0.a1
pyrus_communis	pycom05g12220 pycom10g11080
rosa_chinensis	RchiOBHm_Chr6g0279051
rosa_laevigata	RLG00000013170
rosa_multiflora	Rmu_sc0002080.1_g000007
rosa_roxburghii	Rroxscaffold_7G00189180
rosa_rugosa	Rorug06G0121700
rosa_samantha	Rh6AG230700 Rh6BG235500 Rh6CG237500
rosa_wichuraiana	Rw0G017040 Rw0G021120 Rw6G020190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	461
AccB1I	GGYRCC	1 cut(s)	458
AccBSI	CCGCTC	1 cut(s)	109
AccII	CGCG	1 cut(s)	427
AciI	CCGC	4 cut(s)	45, 107, 248, 427
AclWI	GGATC	1 cut(s)	516
AfiI	CCNNNNNNNGG	2 cut(s)	306, 307
AgsI	TTSAA	1 cut(s)	518
AjnI	CCWGG	2 cut(s)	304, 347
AloI	GAACNNNNNNTCC	2 cut(s)	259, 291
AluBI	AGCT	4 cut(s)	18, 103, 392, 502
AluI	AGCT	4 cut(s)	18, 103, 392, 502
Alw26I	GTCTC	2 cut(s)	340, 357
AlwI	GGATC	1 cut(s)	516
AoxI	GGCC	2 cut(s)	92, 289
ApeKI	GCWGC	1 cut(s)	224
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AspS9I	GGNCC	2 cut(s)	93, 290
AsuHPI	GGTGA	3 cut(s)	198, 250, 352
BanI	GGYRCC	1 cut(s)	458
BbsI	GAAGAC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	1 cut(s)	235
BceAI	ACGGC	2 cut(s)	107, 472
BciT130I	CCWGG	2 cut(s)	306, 349
BcoDI	GTCTC	2 cut(s)	340, 357
BisI	GCNGC	2 cut(s)	225, 249
BlsI	GCNGC	2 cut(s)	226, 250
Bme1390I	CCNGG	2 cut(s)	306, 349
BmgT120I	GGNCC	2 cut(s)	93, 290
BmiI	GGNNCC	1 cut(s)	460
BmrFI	CCNGG	2 cut(s)	306, 349
BmsI	GCATC	2 cut(s)	372, 473
BpiI	GAAGAC	1 cut(s)	15
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
Bsa29I	ATCGAT	1 cut(s)	511
BsaI	GGTCTC	1 cut(s)	357
BsaJI	CCNNGG	3 cut(s)	216, 305, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	306, 307
Bse1I	ACTGG	1 cut(s)	240
Bse3DI	GCAATG	2 cut(s)	234, 493
BseBI	CCWGG	2 cut(s)	306, 349
BseCI	ATCGAT	1 cut(s)	511
BseDI	CCNNGG	3 cut(s)	216, 305, 347
BseGI	GGATG	2 cut(s)	387, 488
BseLI	CCNNNNNNNGG	2 cut(s)	306, 307
BseMI	GCAATG	2 cut(s)	234, 493
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	491
Bsh1236I	CGCG	1 cut(s)	427
BshFI	GGCC	2 cut(s)	94, 291
BshNI	GGYRCC	1 cut(s)	458
BshVI	ATCGAT	1 cut(s)	511
BsiSI	CCGG	1 cut(s)	376
BslFI	GGGAC	2 cut(s)	64, 246
BslI	CCNNNNNNNGG	2 cut(s)	306, 307
BsmAI	GTCTC	2 cut(s)	340, 357
BsmFI	GGGAC	2 cut(s)	64, 246
BsnI	GGCC	2 cut(s)	94, 291
Bso31I	GGTCTC	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	508
BspACI	CCGC	4 cut(s)	45, 107, 248, 427
BspANI	GGCC	2 cut(s)	94, 291
BspCNI	CTCAG	1 cut(s)	195
BspDI	ATCGAT	1 cut(s)	511
BspFNI	CGCG	1 cut(s)	427
BspHI	TCATGA	1 cut(s)	527
BspLI	GGNNCC	1 cut(s)	460
BspPI	GGATC	1 cut(s)	516
BspT107I	GGYRCC	1 cut(s)	458
BspTNI	GGTCTC	1 cut(s)	357
BsrBI	CCGCTC	1 cut(s)	109
BsrDI	GCAATG	2 cut(s)	234, 493
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	3 cut(s)	216, 305, 347
BssMI	GATC	1 cut(s)	508
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	306, 349
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	2 cut(s)	253, 362
BstC8I	GCNNGC	2 cut(s)	111, 429
BstDEI	CTNAG	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	387, 488
BstFNI	CGCG	1 cut(s)	427
BstKTI	GATC	1 cut(s)	511
BstMAI	GTCTC	2 cut(s)	340, 357
BstMBI	GATC	1 cut(s)	508
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	2 cut(s)	306, 349
BstSCI	CCNGG	2 cut(s)	304, 347
BstUI	CGCG	1 cut(s)	427
BstV1I	GCAGC	1 cut(s)	236
BstV2I	GAAGAC	1 cut(s)	15
Bsu15I	ATCGAT	1 cut(s)	511
BsuRI	GGCC	2 cut(s)	94, 291
BsuTUI	ATCGAT	1 cut(s)	511
BtsCI	GGATG	2 cut(s)	387, 488
BtsI	GCAGTG	1 cut(s)	479
BtsIMutI	CAGTG	2 cut(s)	450, 479
Cac8I	GCNNGC	2 cut(s)	111, 429
CciI	TCATGA	1 cut(s)	527
Cfr13I	GGNCC	2 cut(s)	93, 290
ClaI	ATCGAT	1 cut(s)	511
CseI	GACGC	1 cut(s)	230
CviAII	CATG	2 cut(s)	443, 528
CviJI	RGCY	8 cut(s)	8, 18, 94, 103, 192, 291, 392, 502
CviKI_1	RGCY	8 cut(s)	8, 18, 94, 103, 192, 291, 392, 502
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	1 cut(s)	510
DpnII	GATC	1 cut(s)	508
DrdI	GACNNNNNNGTC	1 cut(s)	461
DseDI	GACNNNNNNGTC	1 cut(s)	461
Eam1104I	CTCTTC	2 cut(s)	253, 362
EarI	CTCTTC	2 cut(s)	253, 362
Eco130I	CCWWGG	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	304, 347
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	493
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	446, 531
FaiI	YATR	3 cut(s)	444, 498, 529
FaqI	GGGAC	2 cut(s)	64, 246
FatI	CATG	2 cut(s)	442, 527
FauI	CCCGC	1 cut(s)	420
Fnu4HI	GCNGC	2 cut(s)	225, 249
FokI	GGATG	2 cut(s)	394, 495
Fsp4HI	GCNGC	2 cut(s)	225, 249
GluI	GCNGC	2 cut(s)	225, 249
HaeIII	GGCC	2 cut(s)	94, 291
HapII	CCGG	1 cut(s)	376
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	446, 531
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	3 cut(s)	134, 152, 178
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	3 cut(s)	198, 250, 352
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	4 cut(s)	144, 151, 177, 315
Hpy188III	TCNNGA	2 cut(s)	279, 528
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	4 cut(s)	64, 96, 182, 281
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	3 cut(s)	472, 486, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	446, 531
Kzo9I	GATC	1 cut(s)	508
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	2 cut(s)	372, 473
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	1 cut(s)	510
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	1 cut(s)	508
MboII	GAAGA	4 cut(s)	15, 42, 270, 349
MluCI	AATT	1 cut(s)	432
MmeI	TCCRAC	1 cut(s)	129
Mph1103I	ATGCAT	1 cut(s)	493
MseI	TTAA	1 cut(s)	435
MspI	CCGG	1 cut(s)	376
MspR9I	CCNGG	2 cut(s)	306, 349
MvaI	CCWGG	2 cut(s)	306, 349
MvnI	CGCG	1 cut(s)	427
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeII	GATC	1 cut(s)	508
NlaIII	CATG	2 cut(s)	446, 531
NlaIV	GGNNCC	1 cut(s)	460
NsiI	ATGCAT	1 cut(s)	493
PagI	TCATGA	1 cut(s)	527
PfeI	GAWTC	3 cut(s)	134, 152, 178
PkrI	GCNGC	2 cut(s)	226, 250
Psp6I	CCWGG	2 cut(s)	304, 347
PspGI	CCWGG	2 cut(s)	304, 347
PspN4I	GGNNCC	1 cut(s)	460
PspPI	GGNCC	2 cut(s)	93, 290
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	2 cut(s)	225, 249
Sau3AI	GATC	1 cut(s)	508
Sau96I	GGNCC	2 cut(s)	93, 290
ScrFI	CCNGG	2 cut(s)	306, 349
SetI	ASST	6 cut(s)	20, 41, 105, 394, 504, 523
SfaNI	GCATC	2 cut(s)	372, 473
Sse9I	AATT	1 cut(s)	432
SsiI	CCGC	4 cut(s)	45, 107, 248, 427
StyD4I	CCNGG	2 cut(s)	304, 347
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	463
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	511
TasI	AATT	1 cut(s)	432
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	3 cut(s)	134, 152, 178
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	2 cut(s)	457, 479
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	3 cut(s)	147, 485, 516
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	2 cut(s)	457, 479
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.