Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003906

Physical Location & Seq

Genomic Coordinates Forward (+)

21176179 .. 21180901

Gene Structure 4723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3627 bp

ATGGAGGAAGACGAAGATGCAATTTTGCTCAACAGTTTGAAAGGGGCGACGGCGGCGAATCCCGAGGATATCGAGAGGGACATTTTATCAGGGGTACATAATAATGGCAATGGTAGTAATGTTGGTGAAGTTGGAGGGAGTAATGAGGAGGAGGAACGCCTTGAGAAATCCGAAAGTATTGATCCATCGGTTACCAGTGGGGTCAAATTGTATAACAAATTGAGGGCAGTTGAGTTTGAAATTGATGCCGTTGAGTCCACTGTTGAACCAGAACAAGCGGGGAGTGAAGAGGGTGATCGTGATGGTGGTGATGGCACAGAGGCGGGAAATAAGGAAGATAACCTCCAGCATGCCCTGGCTACTGACCGGTTAAGAAGTCTAAAGAAAACAAAGGCGCAACTTGAGAAGGAGCTTTCGGATTTAGGCAAGGGAAGACCATCCAAGGGTATTGCGCGTGACAAAGTCTTATTGGATATTGTCAAGGACAAGCCTGCACCCAAGAGGAAGTCGAAACAAGTTCAGATATCCGGAAAAAAGCTAAAGAAAAGGATCAAAACGGTCTCATTTGATGAGGATGATGACTTTGATGCTGTGTTGGATGCAGCATCTGCAGGCTTTGTTGAAACAGAAAGGGATGAATTAGTTCGGAAAGGAATTTTAACTCCTTTCCATAAGCTAAAGGGCTTTGAGCGCGGCCTTCAAGAACAAGGGCCATCTCGGGGCCGTAATGTTCCCGCGGAAGGAGGCAGGAGTGATGATTTTGTTTCAGCCAGTGTTGCTAGAGCAGTTCAGTCACTTTCAGAGGCTGCTCAAGCTCGCCCAGCTACCAAGTTGCTTGATCCAGAAGCTCTACCAAAGCTTGATCCACCCACTCATCCTTTTAAGAGGCTAAGGAAACCGCTTAAAATTCCTCAATCCCTAGAAAATGGTACACAGAGGACTAAAAGTTCAGGAAAGAAAAGGAAGCGTCCTTTGCCGGACAAAAGATGGAGAAAGCGCATTTCTCTTGAGGAAAATAATTTGCTTGAAAGTGAAAACACTCCCAGCTGTGAAGAAGAAAACAAAGATGATGTTGGAGATGTAGATGATGATGAGTATCCACATGTTACCCTAGAAGGGGGGCTGAAAATTCCGGAGTACATTTTTAACGAACTCTTTGACTATCAAAAGGTAGGGGTCCAGTGGCTATGGGAACTGCATTGCCAAAGAGCAGGTGGAATTATTGGAGATGAGATGGGTCTTGGTAAAACCATCCAGGTTCTGTCGTTCCTCGGTGCATTGCATTTCAGTCATATGTATAAACCAAGCATTATTGTCTGCCCAGTTACTCTTTTGCGCCAATGGAAAAGGGAGGCTAAAAAATGGTACCCGAGCTTTCATGTGGAGCTACTTCATGATTCAGCTCGGGAGCCTGCCATTAAAAATAAAGGATCAAAGTCTGATGAAAGTGATTCTGATAGTGAAGGTTCATCGGACAGTGATTATGAGAGACCAGAATCATCTAAAAGCACCAAAAAATGGGATTCCTTGATCAACCGTGTTTTGAGGTCGGAATCTGGGTTGCTAGTTACAACTTATGAGCAACTCCGTATTGTAGGGGAAAGTTTGCTTGACGTTGATTGGGGTTATGCAGTTCTGGACGAAGGACACCGAATCAGGAACCCAAATGCAGAAGTTACTCTAGTTTGTAAGCAGTTACAAACAGTACATCGTATTATAATGACGGGTGCACCAATTCAGAACAAGCTGACTGAACTGTGGTCCTTGTTTGATTTTGTTTTCCCTGGAAAGTTGGGGGTGTTGCCCATATTTGAGGCTGAGTTTGCAGTTCCCATATCTGTTGGTGGCTATGCGAATGCTTCACCATTACAAGTATCCACTGCATACAGGTGTGCTGTGGTTTTGCGAGACTTGATCATGCCGTATCTCCTCCGGCGCATGAAGGCTGATGTGGACGCGCAGCTTCCTAAGAAGACTGAACATGTCATCTTTTGCAGCCTCACTGATGAGCAAAGATCTGCATATAGAGCATTTCTTGCTAGTTCTGAGGTGGAACAGATTATGGATGGTAATAGGAATTCACTTTATGGAATTGATGTCATGCGCAAGATCTGCAACCACCCTGATCTGCTTGAGAGGGAACACTGCGGCCAGAATCCAGATTATGGGAATCTAGAACGTAGTGGGAAATTAAAAGTTGTTTCACAAGTGCTTAAAGTTTGGAAGGATCAAGCGCATTGTGTTCTTCTTTTTACACAAACTCAGCAAATGCTTGACATTATTGAAAGTTTTCTGGTTGCTGATGGTTATAGTTACCGGAGGATGGATGGTCTTACTCCCATCAAACAGAGGATGGCTTTAATAGATGAATTTAACAACTCAAATGATGTGTTTGTTTTCATTTTAACAACTAAAGTGGGTGGTTTAGGAACAAATCTGACAGGTGCAAACAGGGTGATCATCTGGATTGATCCCGACTGGAACCCTTCAACTGACATCCAGGCAAGAGAGCGGGCTTGGCGTATTGGTCAAAAGCGGGATGTAACCATATATAGATTGATCACCCGCGGAACCATAGAGGAGAAGGTATATCATAGACAAATTTACAAGCATTTCCTGACCAATAAGATATTGAAGAACCCGCAACAGAGAAGGATCTTTAAAGCTAGAGACATGAAGGATCTTTTCACTCTGAGTGATGACAGAGAGAATGGGTCTACTGAAACAGCTAATCTGTTCGGTCAATTATCTGAAGATGCCAACGTCGTTGGTGTGCAGAATGATAAACCCGATAAGCAAGATTCTCAGAGAGGTTCTGTACGGTCTACCAATGGTGTTGTGGCTGACAAGGCAAATAACTCAGAGGCTGGACCATCCAGGAGGAATGGGAAAGAAAAGGCTGACCAGAGTGACGGTGAAGTAGATGAAGAGACAAATATTTTGAGGTGCCTTTTTGACGCCCAAGGGATACATAGTGCTATGAACCATGATGTAATCATGAATGCCCATGATGAAGAGAAGATGAAGCTTGACGAGCAAGCTTCCCGAGTTGCACAAAGAGCAGCAGAAGCGTTGCGCCAGTCACGGATGCTTCGAAGCCGTGATGGCGTGTCTGTCCCCACATGGACTGGGAAATCAGGAATGGCAGGTGCACCATCAGCTGTCCGTGGGAAATTCGGGTCTACTCTGAACTCCCAGTTGGTCAAGAATACCAAACGATCAGATGAAGGCCCCAGCAACGGCACAAATGGTTTTGTGGCTGGGGCTCCTGCTGGGAAGGCACTATCTTCTGCTGAATTACTGGCAAAAATTAGAGGAAACCAAGAAAGAGCTGTGGAAGCCGGAATTGAGCATCAGTTTAACCGAGCAAAATCCCTTGATGTTGGACCTTCTAGGACGGGTCACAACTTAGGCGGAGTGCAACCTGAAGTAGTGATTCGTCAGATCTGTACATTCATCCAACAAAGAGGCGGAAGTACGGATTCTTCAAGCATAGTGCAGCATTTTAAGGACAGAATACCATCAAAGGATCTTCCCTTGTTTAAGAATCTGTTGAAGGAAATAGCCAAACTGGAGAAAAACCAAAACGGAGCAGTTTGGGTTCTAAAGCCAGAGATCGATCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001207 GO:0001208 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006325 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010767 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034644 GO:0034728 GO:0042623 GO:0043170 GO:0043618 GO:0043620 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0104004 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

1209

Amino Acids

134.71

Weight (kDa)

6.45

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	388 - 710	1.8e-77	SNF2-related domain
HDA2-3	PF11496	700 - 864	4.2e-06	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	730 - 843	1.4e-21	Helicase conserved C-terminal domain
WHD_Rad26_CSB	PF25875	1144 - 1206	1.2e-13	Rad26/CSB winged helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760
fragaria_vesca	FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200
malus_domestica	MD05G1194600.v1.1
prunus_persica	Prupe.8G221300_v2.0.a1
pyrus_communis	pycom05g18190 pycom10g15720
rosa_chinensis	RchiOBHm_Chr6g0287701
rosa_laevigata	RLG00000012472
rosa_multiflora	Rmu_sc0003335.1_g000002 Rmu_sc0037270.1_g000001 Rmu_sc0037271.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181080 Rroxscaffold_7G00181270
rosa_rugosa	Rorug06G0190800 Rorug06G0190900 Rorug06G0191000 Rorug06G0191100
rosa_samantha	Rh6AG301300 Rh6BG307000 Rh6CG302500 Rh6CG315200 Rh6DG298700
rosa_wichuraiana	Rw6G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1718
AarI	CACCTGC	2 cut(s)	1202, 3137
Acc16I	TGCGCA	1 cut(s)	2105
Acc36I	ACCTGC	2 cut(s)	1202, 3137
Acc65I	GGTACC	1 cut(s)	1365
AccB1I	GGYRCC	2 cut(s)	1365, 2946
AccB7I	CCANNNNNTGG	2 cut(s)	1518, 2165
AccBSI	CCGCTC	1 cut(s)	2512
AccI	GTMKAC	3 cut(s)	2717, 2825, 3182
AccII	CGCG	5 cut(s)	454, 693, 737, 1958, 2568
AccIII	TCCGGA	2 cut(s)	527, 1132
AcoI	YGGCCR	1 cut(s)	2149
AcsI	RAATTY	7 cut(s)	654, 906, 1128, 2077, 2369, 2601, 3173
AcuI	CTGAAG	2 cut(s)	2772, 3447
AcyI	GRCGYC	1 cut(s)	2958
AfaI	GTAC	8 cut(s)	96, 931, 1139, 1367, 1707, 2820, 3451, 3478
AfiI	CCNNNNNNNGG	9 cut(s)	443, 719, 740, 1116, 1117, 1518, 2165, 2323, 3239
AflIII	ACRYGT	2 cut(s)	1102, 1981
AgeI	ACCGGT	1 cut(s)	366
AjnI	CCWGG	5 cut(s)	354, 1254, 1783, 2499, 2876
AjuI	GAANNNNNNNTTGG	2 cut(s)	3182, 3214
AloI	GAACNNNNNNTCC	2 cut(s)	931, 963
Alw21I	GWGCWC	2 cut(s)	1732, 3154
Alw26I	GTCTC	5 cut(s)	565, 1483, 1902, 2664, 2924
Alw44I	GTGCAC	2 cut(s)	1728, 3150
AlwNI	CAGNNNCTG	4 cut(s)	608, 806, 1261, 2867
Ama87I	CYCGRG	5 cut(s)	62, 717, 1369, 1404, 3045
Aor13HI	TCCGGA	2 cut(s)	527, 1132
AoxI	GGCC	5 cut(s)	694, 710, 721, 2149, 3229
ApaLI	GTGCAC	2 cut(s)	1728, 3150
ApeKI	GCWGC	6 cut(s)	602, 806, 1960, 1995, 3062, 3499
ApoI	RAATTY	7 cut(s)	654, 906, 1128, 2077, 2369, 2601, 3173
ArsI	GACNNNNNNTTYG	2 cut(s)	2923, 2955
AsiGI	ACCGGT	1 cut(s)	366
Asp700I	GAANNNNTTC	2 cut(s)	642, 2289
Asp718I	GGTACC	1 cut(s)	1365
AspS9I	GGNCC	7 cut(s)	710, 721, 1177, 1761, 2870, 3230, 3386
AsuHPI	GGTGA	7 cut(s)	137, 305, 320, 1854, 2467, 2554, 2927
AsuII	TTCGAA	1 cut(s)	3094
AvaI	CYCGRG	5 cut(s)	62, 717, 1369, 1404, 3045
AvaII	GGWCC	4 cut(s)	1177, 1761, 2870, 3386
BaeGI	GKGCMC	2 cut(s)	1732, 3154
BanI	GGYRCC	2 cut(s)	1365, 2946
BanII	GRGCYC	1 cut(s)	3268
BarI	GAAGNNNNNNTAC	2 cut(s)	3469, 3501
BbsI	GAAGAC	3 cut(s)	15, 439, 1979
Bbv12I	GWGCWC	2 cut(s)	1732, 3154
BbvI	GCAGC	6 cut(s)	614, 793, 1972, 2007, 3074, 3511
BceAI	ACGGC	6 cut(s)	66, 233, 708, 1906, 3084, 3256
BciT130I	CCWGG	5 cut(s)	356, 1256, 1785, 2501, 2878
BciVI	GTATCC	3 cut(s)	1107, 1885, 2961
BclI	TGATCA	4 cut(s)	1530, 1914, 2457, 2559
BcoDI	GTCTC	5 cut(s)	565, 1483, 1902, 2664, 2924
BfaI	CTAG	9 cut(s)	780, 920, 1112, 1565, 1682, 2040, 2174, 2667, 3393
BfmI	CTRYAG	1 cut(s)	609
BfuAI	ACCTGC	2 cut(s)	1202, 3137
BfuI	GTATCC	3 cut(s)	1107, 1885, 2961
BglI	GCCNNNNNGGC	1 cut(s)	3105
BglII	AGATCT	3 cut(s)	2015, 2109, 3444
BisI	GCNGC	9 cut(s)	54, 603, 694, 807, 1961, 1996, 2149, 3063, 3500
BlsI	GCNGC	9 cut(s)	55, 604, 695, 808, 1962, 1997, 2150, 3064, 3501
Bme1390I	CCNGG	5 cut(s)	356, 1256, 1785, 2501, 2878
Bme18I	GGWCC	4 cut(s)	1177, 1761, 2870, 3386
BmeT110I	CYCGRG	5 cut(s)	62, 717, 1369, 1404, 3045
BmgT120I	GGNCC	7 cut(s)	710, 721, 1177, 1761, 2870, 3230, 3386
BmrFI	CCNGG	5 cut(s)	356, 1256, 1785, 2501, 2878
BmrI	ACTGGG	3 cut(s)	1316, 3138, 3190
BmsI	GCATC	8 cut(s)	7, 235, 577, 589, 614, 2746, 3078, 3361
BmuI	ACTGGG	3 cut(s)	1316, 3138, 3190
BpiI	GAAGAC	3 cut(s)	15, 439, 1979
BpmI	CTGGAG	2 cut(s)	329, 3593
Bpu10I	CCTNAGC	1 cut(s)	890
Bpu14I	TTCGAA	1 cut(s)	3094
BpuEI	CTTGAG	5 cut(s)	182, 422, 795, 1028, 2153
Bsa29I	ATCGAT	1 cut(s)	3618
BsaBI	GATNNNNATC	1 cut(s)	1095
BsaHI	GRCGYC	1 cut(s)	2958
BsaI	GGTCTC	2 cut(s)	565, 1483
BsaJI	CCNNGG	9 cut(s)	63, 354, 441, 735, 1270, 1783, 2566, 2962, 3166
BsaWI	WCCGGW	4 cut(s)	366, 527, 1132, 2316
Bsc4I	CCNNNNNNNGG	9 cut(s)	443, 719, 740, 1116, 1117, 1518, 2165, 2323, 3239
Bse118I	RCCGGY	1 cut(s)	366
Bse3DI	GCAATG	3 cut(s)	115, 1198, 1277
Bse8I	GATNNNNATC	1 cut(s)	1095
BseAI	TCCGGA	2 cut(s)	527, 1132
BseBI	CCWGG	5 cut(s)	356, 1256, 1785, 2501, 2878
BseCI	ATCGAT	1 cut(s)	3618
BseDI	CCNNGG	9 cut(s)	63, 354, 441, 735, 1270, 1783, 2566, 2962, 3166
BseJI	GATNNNNATC	1 cut(s)	1095
BseLI	CCNNNNNNNGG	9 cut(s)	443, 719, 740, 1116, 1117, 1518, 2165, 2323, 3239
BseMI	GCAATG	3 cut(s)	115, 1198, 1277
BseMII	CTCAG	6 cut(s)	1809, 2037, 2276, 2684, 2819, 2874
BseRI	GAGGAG	4 cut(s)	161, 164, 1919, 2594
BseSI	GKGCMC	2 cut(s)	1732, 3154
BseXI	GCAGC	6 cut(s)	614, 793, 1972, 2007, 3074, 3511
BseYI	CCCAGC	5 cut(s)	820, 1043, 3233, 3260, 3272
BsgI	GTGCAG	3 cut(s)	477, 2795, 3518
Bsh1236I	CGCG	5 cut(s)	454, 693, 737, 1958, 2568
Bsh1285I	CGRYCG	1 cut(s)	3622
BshFI	GGCC	5 cut(s)	696, 712, 723, 2151, 3231
BshNI	GGYRCC	2 cut(s)	1365, 2946
BshTI	ACCGGT	1 cut(s)	366
BshVI	ATCGAT	1 cut(s)	3618
BsiEI	CGRYCG	1 cut(s)	3622
BsiHKAI	GWGCWC	2 cut(s)	1732, 3154
BsiHKCI	CYCGRG	5 cut(s)	62, 717, 1369, 1404, 3045
BsiSI	CCGG	7 cut(s)	367, 528, 977, 1133, 1933, 2317, 3342
BslFI	GGGAC	2 cut(s)	92, 3101
BslI	CCNNNNNNNGG	9 cut(s)	443, 719, 740, 1116, 1117, 1518, 2165, 2323, 3239
BsmAI	GTCTC	5 cut(s)	565, 1483, 1902, 2664, 2924
BsmFI	GGGAC	2 cut(s)	92, 3101
BsmI	GAATGC	2 cut(s)	1861, 3007
BsnI	GGCC	5 cut(s)	696, 712, 723, 2151, 3231
Bso31I	GGTCTC	2 cut(s)	565, 1483
BsoBI	CYCGRG	5 cut(s)	62, 717, 1369, 1404, 3045
Bsp119I	TTCGAA	1 cut(s)	3094
Bsp1286I	GDGCHC	3 cut(s)	1732, 3154, 3268
Bsp13I	TCCGGA	2 cut(s)	527, 1132
Bsp1407I	TGTACA	1 cut(s)	3449
BspANI	GGCC	5 cut(s)	696, 712, 723, 2151, 3231
BspCNI	CTCAG	6 cut(s)	1810, 2038, 2275, 2685, 2818, 2873
BspDI	ATCGAT	1 cut(s)	3618
BspEI	TCCGGA	2 cut(s)	527, 1132
BspFNI	CGCG	5 cut(s)	454, 693, 737, 1958, 2568
BspHI	TCATGA	2 cut(s)	1393, 2997
BspMAI	CTGCAG	1 cut(s)	613
BspMI	ACCTGC	2 cut(s)	1202, 3137
BspT104I	TTCGAA	1 cut(s)	3094
BspT107I	GGYRCC	2 cut(s)	1365, 2946
BspTNI	GGTCTC	2 cut(s)	565, 1483
BsrBI	CCGCTC	1 cut(s)	2512
BsrDI	GCAATG	3 cut(s)	115, 1198, 1277
BsrFI	RCCGGY	1 cut(s)	366
BsrGI	TGTACA	1 cut(s)	3449
BssAI	RCCGGY	1 cut(s)	366
BssECI	CCNNGG	9 cut(s)	63, 354, 441, 735, 1270, 1783, 2566, 2962, 3166
BssNI	GRCGYC	1 cut(s)	2958
BssT1I	CCWWGG	2 cut(s)	441, 2962
Bst2UI	CCWGG	5 cut(s)	356, 1256, 1785, 2501, 2878
Bst4CI	ACNGT	9 cut(s)	35, 262, 559, 1478, 1538, 1705, 1758, 2823, 2915
Bst6I	CTCTTC	3 cut(s)	282, 2922, 3009
BstACI	GRCGYC	1 cut(s)	2958
BstAPI	GCANNNNNTGC	3 cut(s)	608, 2036, 2112
BstAUI	TGTACA	1 cut(s)	3449
BstBI	TTCGAA	1 cut(s)	3094
BstC8I	GCNNGC	7 cut(s)	351, 492, 613, 817, 1413, 2514, 3039
BstDEI	CTNAG	9 cut(s)	890, 1818, 1968, 2046, 2262, 2693, 2805, 2860, 3409
BstDSI	CCRYGG	3 cut(s)	735, 2566, 3166
BstEII	GGTNACC	1 cut(s)	190
BstFNI	CGCG	5 cut(s)	454, 693, 737, 1958, 2568
BstMAI	GTCTC	5 cut(s)	565, 1483, 1902, 2664, 2924
BstMCI	CGRYCG	1 cut(s)	3622
BstNI	CCWGG	5 cut(s)	356, 1256, 1785, 2501, 2878
BstNSI	RCATGY	3 cut(s)	353, 1106, 1985
BstPI	GGTNACC	1 cut(s)	190
BstSCI	CCNGG	5 cut(s)	354, 1254, 1783, 2499, 2876
BstSFI	CTRYAG	1 cut(s)	609
BstSLI	GKGCMC	2 cut(s)	1732, 3154
BstUI	CGCG	5 cut(s)	454, 693, 737, 1958, 2568
BstV1I	GCAGC	6 cut(s)	614, 793, 1972, 2007, 3074, 3511
BstV2I	GAAGAC	3 cut(s)	15, 439, 1979
BstX2I	RGATCY	6 cut(s)	2015, 2109, 2655, 2680, 3444, 3529
BstYI	RGATCY	6 cut(s)	2015, 2109, 2655, 2680, 3444, 3529
Bsu15I	ATCGAT	1 cut(s)	3618
BsuI	GTATCC	3 cut(s)	1107, 1885, 2961
BsuRI	GGCC	5 cut(s)	696, 712, 723, 2151, 3231
BsuTUI	ATCGAT	1 cut(s)	3618
BtgI	CCRYGG	3 cut(s)	735, 2566, 3166
BtsI	GCAGTG	2 cut(s)	1878, 2143
BtsIMutI	CAGTG	8 cut(s)	202, 258, 778, 1187, 1483, 1878, 2001, 2143
BveI	ACCTGC	2 cut(s)	1202, 3137
Cac8I	GCNNGC	7 cut(s)	351, 492, 613, 817, 1413, 2514, 3039
CaiI	CAGNNNCTG	4 cut(s)	608, 806, 1261, 2867
CciI	TCATGA	2 cut(s)	1393, 2997
Cfr10I	RCCGGY	1 cut(s)	366
Cfr13I	GGNCC	7 cut(s)	710, 721, 1177, 1761, 2870, 3230, 3386
Cfr42I	CCGCGG	2 cut(s)	738, 2569
ClaI	ATCGAT	1 cut(s)	3618
CseI	GACGC	3 cut(s)	956, 1964, 2966
Csp6I	GTAC	8 cut(s)	95, 930, 1138, 1366, 1706, 2819, 3450, 3477
CspAI	ACCGGT	1 cut(s)	366
CspCI	CAANNNNNGTGG	2 cut(s)	2397, 2432
CviQI	GTAC	8 cut(s)	95, 930, 1138, 1366, 1706, 2819, 3450, 3477
DdeI	CTNAG	9 cut(s)	890, 1818, 1968, 2046, 2262, 2693, 2805, 2860, 3409
DraI	TTTAAA	1 cut(s)	2662
EaeI	YGGCCR	1 cut(s)	2149
Eam1104I	CTCTTC	3 cut(s)	282, 2922, 3009
EarI	CTCTTC	3 cut(s)	282, 2922, 3009
EciI	GGCGGA	2 cut(s)	3429, 3486
Eco130I	CCWWGG	2 cut(s)	441, 2962
Eco24I	GRGCYC	1 cut(s)	3268
Eco31I	GGTCTC	2 cut(s)	565, 1483
Eco32I	GATATC	2 cut(s)	70, 525
Eco47I	GGWCC	4 cut(s)	1177, 1761, 2870, 3386
Eco57I	CTGAAG	2 cut(s)	2772, 3447
Eco88I	CYCGRG	5 cut(s)	62, 717, 1369, 1404, 3045
Eco91I	GGTNACC	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	3230
EcoO65I	GGTNACC	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	2077
EcoRII	CCWGG	5 cut(s)	354, 1254, 1783, 2499, 2876
EcoRV	GATATC	2 cut(s)	70, 525
EcoT14I	CCWWGG	2 cut(s)	441, 2962
EcoT38I	GRGCYC	1 cut(s)	3268
ErhI	CCWWGG	2 cut(s)	441, 2962
FaqI	GGGAC	2 cut(s)	92, 3101
FauI	CCCGC	7 cut(s)	271, 316, 742, 2505, 2529, 2573, 2649
FauNDI	CATATG	1 cut(s)	1293
FbaI	TGATCA	4 cut(s)	1530, 1914, 2457, 2559
FblI	GTMKAC	3 cut(s)	2717, 2825, 3182
Fnu4HI	GCNGC	9 cut(s)	54, 603, 694, 807, 1961, 1996, 2149, 3063, 3500
FriOI	GRGCYC	1 cut(s)	3268
Fsp4HI	GCNGC	9 cut(s)	54, 603, 694, 807, 1961, 1996, 2149, 3063, 3500
FspBI	CTAG	9 cut(s)	780, 920, 1112, 1565, 1682, 2040, 2174, 2667, 3393
FspI	TGCGCA	1 cut(s)	2105
GluI	GCNGC	9 cut(s)	54, 603, 694, 807, 1961, 1996, 2149, 3063, 3500
GsaI	CCCAGC	5 cut(s)	824, 1047, 3237, 3264, 3276
GsuI	CTGGAG	2 cut(s)	329, 3593
HaeIII	GGCC	5 cut(s)	696, 712, 723, 2151, 3231
HapII	CCGG	7 cut(s)	367, 528, 977, 1133, 1933, 2317, 3342
HgaI	GACGC	3 cut(s)	956, 1964, 2966
Hin1I	GRCGYC	1 cut(s)	2958
HindIII	AAGCTT	3 cut(s)	857, 3026, 3039
HpaII	CCGG	7 cut(s)	367, 528, 977, 1133, 1933, 2317, 3342
HphI	GGTGA	7 cut(s)	137, 305, 320, 1854, 2467, 2554, 2927
Hpy166II	GTNNAC	8 cut(s)	258, 932, 1730, 1954, 2718, 2826, 3152, 3183
Hpy8I	GTNNAC	8 cut(s)	258, 932, 1730, 1954, 2718, 2826, 3152, 3183
Hpy99I	CGWCG	2 cut(s)	52, 2768
HpyCH4III	ACNGT	9 cut(s)	35, 262, 559, 1478, 1538, 1705, 1758, 2823, 2915
HpyCH4IV	ACGT	3 cut(s)	1614, 2179, 2763
HpyF3I	CTNAG	9 cut(s)	890, 1818, 1968, 2046, 2262, 2693, 2805, 2860, 3409
HpySE526I	ACGT	3 cut(s)	1614, 2179, 2763
Hsp92I	GRCGYC	1 cut(s)	2958
Kpn2I	TCCGGA	2 cut(s)	527, 1132
KpnI	GGTACC	1 cut(s)	1369
Ksp22I	TGATCA	4 cut(s)	1530, 1914, 2457, 2559
KspI	CCGCGG	2 cut(s)	738, 2569
LmnI	GCTCC	5 cut(s)	409, 1384, 1408, 3271, 3590
Lsp1109I	GCAGC	6 cut(s)	614, 793, 1972, 2007, 3074, 3511
LweI	GCATC	8 cut(s)	7, 235, 577, 589, 614, 2746, 3078, 3361
MaeI	CTAG	9 cut(s)	780, 920, 1112, 1565, 1682, 2040, 2174, 2667, 3393
MaeII	ACGT	3 cut(s)	1614, 2179, 2763
MbiI	CCGCTC	1 cut(s)	2512
MflI	RGATCY	6 cut(s)	2015, 2109, 2655, 2680, 3444, 3529
MhlI	GDGCHC	3 cut(s)	1732, 3154, 3268
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	6 cut(s)	112, 576, 1054, 1530, 3364, 3484
MroI	TCCGGA	2 cut(s)	527, 1132
MroXI	GAANNNNTTC	2 cut(s)	642, 2289
MslI	CAYNNNNRTG	2 cut(s)	102, 1888
MspA1I	CMGCKG	4 cut(s)	737, 1047, 2568, 3161
MspI	CCGG	7 cut(s)	367, 528, 977, 1133, 1933, 2317, 3342
MspR9I	CCNGG	5 cut(s)	356, 1256, 1785, 2501, 2878
Mva1269I	GAATGC	2 cut(s)	1861, 3007
MvaI	CCWGG	5 cut(s)	356, 1256, 1785, 2501, 2878
MvnI	CGCG	5 cut(s)	454, 693, 737, 1958, 2568
NdeI	CATATG	1 cut(s)	1293
NmuCI	GTSAC	5 cut(s)	455, 792, 2909, 3081, 3401
NsbI	TGCGCA	1 cut(s)	2105
NspI	RCATGY	3 cut(s)	353, 1106, 1985
NspV	TTCGAA	1 cut(s)	3094
PaeI	GCATGC	1 cut(s)	353
PagI	TCATGA	2 cut(s)	1393, 2997
PaqCI	CACCTGC	2 cut(s)	1202, 3137
PciI	ACATGT	2 cut(s)	1102, 1981
PcsI	WCGNNNNNNNCGW	1 cut(s)	3091
PctI	GAATGC	2 cut(s)	1861, 3007
PdmI	GAANNNNTTC	2 cut(s)	642, 2289
PflFI	GACNNNGTC	1 cut(s)	461
PflMI	CCANNNNNTGG	2 cut(s)	1518, 2165
PfoI	TCCNGGA	1 cut(s)	2876
PinAI	ACCGGT	1 cut(s)	366
PkrI	GCNGC	9 cut(s)	55, 604, 695, 808, 1962, 1997, 2150, 3064, 3501
Ple19I	CGATCG	1 cut(s)	3622
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PscI	ACATGT	2 cut(s)	1102, 1981
PsiI	TTATAA	1 cut(s)	1718
Psp6I	CCWGG	5 cut(s)	354, 1254, 1783, 2499, 2876
PspEI	GGTNACC	1 cut(s)	190
PspFI	CCCAGC	5 cut(s)	820, 1043, 3233, 3260, 3272
PspGI	CCWGG	5 cut(s)	354, 1254, 1783, 2499, 2876
PspPI	GGNCC	7 cut(s)	710, 721, 1177, 1761, 2870, 3230, 3386
PstI	CTGCAG	1 cut(s)	613
PstNI	CAGNNNCTG	4 cut(s)	608, 806, 1261, 2867
PsuI	RGATCY	6 cut(s)	2015, 2109, 2655, 2680, 3444, 3529
PsyI	GACNNNGTC	1 cut(s)	461
PvuI	CGATCG	1 cut(s)	3622
PvuII	CAGCTG	2 cut(s)	1047, 3161
RsaI	GTAC	8 cut(s)	96, 931, 1139, 1367, 1707, 2820, 3451, 3478
RsaNI	GTAC	8 cut(s)	95, 930, 1138, 1366, 1706, 2819, 3450, 3477
RseI	CAYNNNNRTG	2 cut(s)	102, 1888
SacII	CCGCGG	2 cut(s)	738, 2569
SatI	GCNGC	9 cut(s)	54, 603, 694, 807, 1961, 1996, 2149, 3063, 3500
Sau96I	GGNCC	7 cut(s)	710, 721, 1177, 1761, 2870, 3230, 3386
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	5 cut(s)	356, 1256, 1785, 2501, 2878
SduI	GDGCHC	3 cut(s)	1732, 3154, 3268
SfaNI	GCATC	8 cut(s)	7, 235, 577, 589, 614, 2746, 3078, 3361
SfcI	CTRYAG	1 cut(s)	609
Sfr303I	CCGCGG	2 cut(s)	738, 2569
SfuI	TTCGAA	1 cut(s)	3094
SgrBI	CCGCGG	2 cut(s)	738, 2569
SinI	GGWCC	4 cut(s)	1177, 1761, 2870, 3386
SmiMI	CAYNNNNRTG	2 cut(s)	102, 1888
SmlI	CTYRAG	5 cut(s)	161, 401, 810, 1007, 2132
SmoI	CTYRAG	5 cut(s)	161, 401, 810, 1007, 2132
SphI	GCATGC	1 cut(s)	353
SspI	AATATT	1 cut(s)	2938
SspMI	CTAG	9 cut(s)	780, 920, 1112, 1565, 1682, 2040, 2174, 2667, 3393
StyD4I	CCNGG	5 cut(s)	354, 1254, 1783, 2499, 2876
StyI	CCWWGG	2 cut(s)	441, 2962
TaaI	ACNGT	9 cut(s)	35, 262, 559, 1478, 1538, 1705, 1758, 2823, 2915
TaiI	ACGT	3 cut(s)	1617, 2182, 2766
TaqI	TCGA	4 cut(s)	72, 509, 3094, 3618
TaqII	GACCGA	1 cut(s)	2729
TatI	WGTACW	3 cut(s)	1137, 1705, 3449
TauI	GCSGC	3 cut(s)	56, 696, 2151
TscAI	CASTG	8 cut(s)	202, 265, 778, 1187, 1483, 1885, 2008, 2150
TseFI	GTSAC	5 cut(s)	455, 792, 2909, 3081, 3401
TseI	GCWGC	6 cut(s)	602, 806, 1960, 1995, 3062, 3499
Tsp45I	GTSAC	5 cut(s)	455, 792, 2909, 3081, 3401
TspGWI	ACGGA	5 cut(s)	1577, 3100, 3155, 3494, 3603
TspRI	CASTG	8 cut(s)	202, 265, 778, 1187, 1483, 1885, 2008, 2150
Tth111I	GACNNNGTC	1 cut(s)	461
Van91I	CCANNNNNTGG	2 cut(s)	1518, 2165
VneI	GTGCAC	2 cut(s)	1728, 3150
VpaK11BI	GGWCC	4 cut(s)	1177, 1761, 2870, 3386
XapI	RAATTY	7 cut(s)	654, 906, 1128, 2077, 2369, 2601, 3173
XbaI	TCTAGA	1 cut(s)	2173
XceI	RCATGY	3 cut(s)	353, 1106, 1985
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1211, 2836
XmiI	GTMKAC	3 cut(s)	2717, 2825, 3182
XmnI	GAANNNNTTC	2 cut(s)	642, 2289
XspI	CTAG	9 cut(s)	780, 920, 1112, 1565, 1682, 2040, 2174, 2667, 3393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.