Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007152

Physical Location & Seq

Genomic Coordinates Reverse (-)

21635090 .. 21638029

Gene Structure 2940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18780.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGATAAGAGTTCAGGCTGCTCTGTGTTCCGTAAATGGGGAAGAGTGGGGAATGATAAAATTGGAGGAAGTAAACTGGAAGATATGTCGAAATCAGATGCGATCCATCGTCGAATTTAAACGTTTGTTCCTTGAGAAGACTGGGAATCCGTGGGAAGCATGGGAGCAAAAACAAAATTTTCAGAAGCAAGCTGGAAGATTCTTTCCATTGGATATTGATTATGGAGTTAATAAACAGGTTTCCAACAAAAACCAGAACAATGCAGACAGCAAATTGGCTCCTCAGTTGGCAGAATTGATGAAGATGCTTTTCAATGTTGAGACATACAGAGCTGCCATGATGGAATTTGAGATAAATATGTCAGAAATGCCGGTTGGCAAACTGAGTAAAGCCAACATCCAAAAGGGGTTTGAGGCATTAACGGAAATACAGAATTTATTGAATAATAATGGTCATGCTCCTTCCACAAAAGAAAGCTTGATTATAGATGCAAGCAACCGTTTTTTCACTGTGATCCCTTCCATACACCCACGGGTTATCAGGGATGAGGATGATTTTAAGTCAAAGGTGAAAATGTTAGAAGCTCTCCAGGACATTGAAATTGCTTCCAGATTAGTTGGTTTTGATGCTGATAGTGATGATTCCCTTGATGAGAAGTATAAGAAGCTCCGGTGTGATATTGACCCAATCCCTCATGATAGTGAAGATTATCAGTTGATTGAAAAATATCTTCTTACTACTCATGCCCCTACACATACGGATTGGAGTCTTGAACTCGAAGAAGTTTTTGCACTTGAAAGGGAAGGCGAATTCAATAAATTTGCTCCCTATCAGAAAAAGCTGAAGAACAAAATGCTTCTTTGGCATGGTTCTCGGTTTACAAATTTTGTGGGTATACTTAGCCAAGGACTGAGAATAGCTCCTCCTGAAGCTCCAGCTACTGGTTATATGTTCGGCAAGGGAATTTACTTTGCTGACCTTGTCAGCAAGAGTGCACAGTATTGCTATACAGATAAGAAAAATCCTGTTGGCCTCATGCTTTTAAGTGAAGTCGCATTGGGGGAGGTCTACGAGCTCAAGAAGGCTGCATATATGGACAAACCTCCAAAGGGAAAGCACTCTACAAAGGGGCTTGGCAAGAAAATACCTCAGGAGTCACAGTATGTAAAATGGAAGGACGATGTCGTCGTGCCTTGTGGCAAACCAGTGCCATCAAATATCAAAGCTTCTGAGCTCATGTATAACGAGTACATCGTTTATGATACAGCTCAAGTGAAGATGCAATACCTGTTGAAGGTGAGGTTTCATCACAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

440

Amino Acids

50.5

Weight (kDa)

8.04

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31320
fragaria_vesca	FvH4_2g21980 FvH4_2g21980 FvH4_2g21980
malus_domestica	MD05G1201000.v1.1 MD10G1187800.v1.1
prunus_persica	Prupe.8G227600_v2.0.a1 Prupe.8G227600_v2.0.a1
pyrus_communis	pycom05g18780 pycom10g16230
rosa_chinensis	RchiOBHm_Chr6g0288861
rosa_laevigata	RLG00000012360
rosa_multiflora	Rmu_sc0005314.1_g000009
rosa_roxburghii	Rroxscaffold_7G00179830
rosa_rugosa	Rorug06G0198600 Rorug06G0198600 Rorug06G0198600 Rorug06G0198700 Rorug06G0198800 Rorug06G0198900 Rorug06G0198900
rosa_samantha	Rh6AG310000 Rh6BG315900 Rh6CG323400
rosa_wichuraiana	Rw6G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1184
AccB7I	CCANNNNNTGG	1 cut(s)	941
AccI	GTMKAC	2 cut(s)	895, 1068
AclI	AACGTT	1 cut(s)	121
AclWI	GGATC	2 cut(s)	96, 508
AcsI	RAATTY	8 cut(s)	113, 175, 344, 433, 809, 818, 883, 963
AcuI	CTGAAG	2 cut(s)	863, 948
AfaI	GTAC	1 cut(s)	1250
AfiI	CCNNNNNNNGG	4 cut(s)	36, 941, 1109, 1294
AgsI	TTSAA	8 cut(s)	313, 442, 599, 722, 773, 797, 814, 1294
AjnI	CCWGG	1 cut(s)	588
AjuI	GAANNNNNNNTTGG	2 cut(s)	357, 389
Alw21I	GWGCWC	3 cut(s)	997, 1077, 1236
Alw26I	GTCTC	1 cut(s)	314
Alw44I	GTGCAC	1 cut(s)	993
AlwI	GGATC	2 cut(s)	96, 508
AlwNI	CAGNNNCTG	1 cut(s)	941
AoxI	GGCC	1 cut(s)	1030
ApaLI	GTGCAC	1 cut(s)	993
ApeKI	GCWGC	3 cut(s)	17, 332, 1085
ApoI	RAATTY	8 cut(s)	113, 175, 344, 433, 809, 818, 883, 963
AsuHPI	GGTGA	2 cut(s)	580, 1309
AxyI	CCTNAGG	1 cut(s)	1149
BaeGI	GKGCMC	1 cut(s)	997
BanII	GRGCYC	2 cut(s)	1077, 1236
BarI	GAAGNNNNNNTAC	2 cut(s)	1268, 1300
BbsI	GAAGAC	1 cut(s)	143
Bbv12I	GWGCWC	3 cut(s)	997, 1077, 1236
BbvI	GCAGC	3 cut(s)	4, 319, 1072
BccI	CCATC	3 cut(s)	113, 334, 1219
BcgI	CGANNNNNNTGC	2 cut(s)	854, 888
BciT130I	CCWGG	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	314
BisI	GCNGC	3 cut(s)	18, 333, 1086
BlsI	GCNGC	3 cut(s)	19, 334, 1087
Bme1390I	CCNGG	1 cut(s)	590
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	590
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	5 cut(s)	87, 294, 478, 616, 1269
BmuI	ACTGGG	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	143
BplI	GAGNNNNNCTC	2 cut(s)	904, 936
BpmI	CTGGAG	2 cut(s)	572, 918
BpuEI	CTTGAG	3 cut(s)	152, 1061, 1254
BsaJI	CCNNGG	3 cut(s)	149, 530, 904
BsaWI	WCCGGW	1 cut(s)	669
BsaXI	ACNNNNNCTCC	2 cut(s)	1145, 1175
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 941, 1109, 1294
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	4 cut(s)	80, 145, 946, 1205
Bse21I	CCTNAGG	1 cut(s)	1149
BseBI	CCWGG	1 cut(s)	590
BseDI	CCNNGG	3 cut(s)	149, 530, 904
BseGI	GGATG	3 cut(s)	396, 550, 556
BseLI	CCNNNNNNNGG	4 cut(s)	36, 941, 1109, 1294
BseMII	CTCAG	5 cut(s)	296, 374, 902, 1163, 1221
BseNI	ACTGG	4 cut(s)	80, 145, 946, 1205
BseRI	GAGGAG	2 cut(s)	270, 912
BseSI	GKGCMC	1 cut(s)	997
BseXI	GCAGC	3 cut(s)	4, 319, 1072
BshFI	GGCC	1 cut(s)	1032
BsiHKAI	GWGCWC	3 cut(s)	997, 1077, 1236
BsiSI	CCGG	2 cut(s)	371, 670
BslI	CCNNNNNNNGG	4 cut(s)	36, 941, 1109, 1294
BsmAI	GTCTC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	1032
Bsp1286I	GDGCHC	3 cut(s)	997, 1077, 1236
Bsp143I	GATC	2 cut(s)	101, 513
BspANI	GGCC	1 cut(s)	1032
BspCNI	CTCAG	5 cut(s)	295, 375, 903, 1162, 1222
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	2 cut(s)	96, 508
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	4 cut(s)	80, 145, 946, 1205
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	3 cut(s)	149, 530, 904
BssMI	GATC	2 cut(s)	101, 513
BssNAI	GTATAC	1 cut(s)	896
BssT1I	CCWWGG	1 cut(s)	904
Bst1107I	GTATAC	1 cut(s)	896
Bst2UI	CCWGG	1 cut(s)	590
Bst4CI	ACNGT	4 cut(s)	500, 511, 999, 1161
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	189, 493
BstDEI	CTNAG	6 cut(s)	282, 383, 899, 911, 1149, 1230
BstDSI	CCRYGG	2 cut(s)	149, 530
BstENI	CCTNNNNNAGG	1 cut(s)	1292
BstF5I	GGATG	3 cut(s)	396, 550, 556
BstKTI	GATC	2 cut(s)	104, 516
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	2 cut(s)	101, 513
BstMWI	GCNNNNNNNGC	1 cut(s)	862
BstNI	CCWGG	1 cut(s)	590
BstSCI	CCNGG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	997
BstV1I	GCAGC	3 cut(s)	4, 319, 1072
BstV2I	GAAGAC	1 cut(s)	143
BstZ17I	GTATAC	1 cut(s)	896
Bsu36I	CCTNAGG	1 cut(s)	1149
BsuRI	GGCC	1 cut(s)	1032
BtgI	CCRYGG	2 cut(s)	149, 530
BtsCI	GGATG	3 cut(s)	396, 550, 556
BtsIMutI	CAGTG	2 cut(s)	507, 1212
Cac8I	GCNNGC	2 cut(s)	189, 493
CaiI	CAGNNNCTG	1 cut(s)	941
CciI	TCATGA	1 cut(s)	694
Cfr10I	RCCGGY	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	1249
CspCI	CAANNNNNGTGG	2 cut(s)	870, 905
CviAII	CATG	8 cut(s)	159, 337, 455, 695, 743, 866, 1036, 1237
CviQI	GTAC	1 cut(s)	1249
DdeI	CTNAG	6 cut(s)	282, 383, 899, 911, 1149, 1230
DpnI	GATC	2 cut(s)	103, 515
DpnII	GATC	2 cut(s)	101, 513
DraI	TTTAAA	1 cut(s)	118
DrdI	GACNNNNNNGTC	1 cut(s)	1184
DseDI	GACNNNNNNGTC	1 cut(s)	1184
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Ecl136II	GAGCTC	2 cut(s)	1075, 1234
Eco130I	CCWWGG	1 cut(s)	904
Eco24I	GRGCYC	2 cut(s)	1077, 1236
Eco53kI	GAGCTC	2 cut(s)	1075, 1234
Eco57I	CTGAAG	2 cut(s)	863, 948
Eco81I	CCTNAGG	1 cut(s)	1149
EcoICRI	GAGCTC	2 cut(s)	1075, 1234
EcoNI	CCTNNNNNAGG	1 cut(s)	1292
EcoRI	GAATTC	1 cut(s)	809
EcoRII	CCWGG	1 cut(s)	588
EcoT14I	CCWWGG	1 cut(s)	904
EcoT38I	GRGCYC	2 cut(s)	1077, 1236
ErhI	CCWWGG	1 cut(s)	904
FaeI	CATG	8 cut(s)	162, 340, 458, 698, 746, 869, 1039, 1240
FatI	CATG	8 cut(s)	158, 336, 454, 694, 742, 865, 1035, 1236
FblI	GTMKAC	2 cut(s)	895, 1068
Fnu4HI	GCNGC	3 cut(s)	18, 333, 1086
FokI	GGATG	3 cut(s)	383, 557, 563
FriOI	GRGCYC	2 cut(s)	1077, 1236
Fsp4HI	GCNGC	3 cut(s)	18, 333, 1086
GluI	GCNGC	3 cut(s)	18, 333, 1086
GsuI	CTGGAG	2 cut(s)	572, 918
HaeIII	GGCC	1 cut(s)	1032
HapII	CCGG	2 cut(s)	371, 670
Hin1II	CATG	8 cut(s)	162, 340, 458, 698, 746, 869, 1039, 1240
HindIII	AAGCTT	2 cut(s)	475, 1224
HinfI	GANTC	5 cut(s)	145, 198, 641, 766, 1154
HpaII	CCGG	2 cut(s)	371, 670
HphI	GGTGA	2 cut(s)	580, 1309
Hpy166II	GTNNAC	5 cut(s)	73, 879, 896, 995, 1069
Hpy188I	TCNGA	5 cut(s)	96, 183, 364, 834, 1231
Hpy188III	TCNNGA	6 cut(s)	609, 695, 770, 926, 1078, 1151
Hpy8I	GTNNAC	5 cut(s)	73, 879, 896, 995, 1069
Hpy99I	CGWCG	2 cut(s)	113, 1190
HpyAV	CCTTC	6 cut(s)	471, 528, 797, 1075, 1168, 1288
HpyCH4III	ACNGT	4 cut(s)	500, 511, 999, 1161
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	6 cut(s)	263, 491, 791, 995, 1088, 1282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	862
HpyF3I	CTNAG	6 cut(s)	282, 383, 899, 911, 1149, 1230
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	8 cut(s)	162, 340, 458, 698, 746, 869, 1039, 1240
Kzo9I	GATC	2 cut(s)	101, 513
LmnI	GCTCC	7 cut(s)	163, 283, 463, 672, 829, 925, 937
Lsp1109I	GCAGC	3 cut(s)	4, 319, 1072
LweI	GCATC	5 cut(s)	87, 294, 478, 616, 1269
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	1155
MalI	GATC	2 cut(s)	103, 515
MboI	GATC	2 cut(s)	101, 513
MhlI	GDGCHC	3 cut(s)	997, 1077, 1236
MlyI	GAGTC	2 cut(s)	775, 1163
MmeI	TCCRAC	1 cut(s)	267
MseI	TTAA	5 cut(s)	117, 228, 419, 558, 1043
MslI	CAYNNNNRTG	1 cut(s)	699
MspI	CCGG	2 cut(s)	371, 670
MspR9I	CCNGG	1 cut(s)	590
MvaI	CCWGG	1 cut(s)	590
MwoI	GCNNNNNNNGC	1 cut(s)	862
NdeII	GATC	2 cut(s)	101, 513
NlaIII	CATG	8 cut(s)	162, 340, 458, 698, 746, 869, 1039, 1240
NlaIV	GGNNCC	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	1155
PagI	TCATGA	1 cut(s)	694
PcsI	WCGNNNNNNNCGW	2 cut(s)	1185, 1251
PfeI	GAWTC	3 cut(s)	145, 198, 641
PflFI	GACNNNGTC	2 cut(s)	980, 1181
PflMI	CCANNNNNTGG	1 cut(s)	941
PfoI	TCCNGGA	1 cut(s)	588
PkrI	GCNGC	3 cut(s)	19, 334, 1087
PleI	GAGTC	2 cut(s)	774, 1162
PpsI	GAGTC	2 cut(s)	774, 1162
Psp124BI	GAGCTC	2 cut(s)	1077, 1236
Psp1406I	AACGTT	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	588
PspN4I	GGNNCC	1 cut(s)	279
PstNI	CAGNNNCTG	1 cut(s)	941
PsyI	GACNNNGTC	2 cut(s)	980, 1181
RsaI	GTAC	1 cut(s)	1250
RsaNI	GTAC	1 cut(s)	1249
RseI	CAYNNNNRTG	1 cut(s)	699
SacI	GAGCTC	2 cut(s)	1077, 1236
SaqAI	TTAA	5 cut(s)	117, 228, 419, 558, 1043
SatI	GCNGC	3 cut(s)	18, 333, 1086
Sau3AI	GATC	2 cut(s)	101, 513
SchI	GAGTC	2 cut(s)	775, 1163
ScrFI	CCNGG	1 cut(s)	590
SduI	GDGCHC	3 cut(s)	997, 1077, 1236
SfaNI	GCATC	5 cut(s)	87, 294, 478, 616, 1269
SmiMI	CAYNNNNRTG	1 cut(s)	699
SmlI	CTYRAG	3 cut(s)	131, 1076, 1269
SmoI	CTYRAG	3 cut(s)	131, 1076, 1269
SstI	GAGCTC	2 cut(s)	1077, 1236
StyD4I	CCNGG	1 cut(s)	588
StyI	CCWWGG	1 cut(s)	904
TaaI	ACNGT	4 cut(s)	500, 511, 999, 1161
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	3 cut(s)	88, 111, 777
TatI	WGTACW	1 cut(s)	1248
TfiI	GAWTC	3 cut(s)	145, 198, 641
Tru1I	TTAA	5 cut(s)	117, 228, 419, 558, 1043
Tru9I	TTAA	5 cut(s)	117, 228, 419, 558, 1043
TscAI	CASTG	2 cut(s)	514, 1212
TseFI	GTSAC	1 cut(s)	1155
TseI	GCWGC	3 cut(s)	17, 332, 1085
Tsp45I	GTSAC	1 cut(s)	1155
TspDTI	ATGAA	2 cut(s)	314, 1295
TspGWI	ACGGA	4 cut(s)	19, 138, 437, 773
TspRI	CASTG	2 cut(s)	514, 1212
Tth111I	GACNNNGTC	2 cut(s)	980, 1181
Van91I	CCANNNNNTGG	1 cut(s)	941
VneI	GTGCAC	1 cut(s)	993
XagI	CCTNNNNNAGG	1 cut(s)	1292
XapI	RAATTY	8 cut(s)	113, 175, 344, 433, 809, 818, 883, 963
XmiI	GTMKAC	2 cut(s)	895, 1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.