Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007152

Physical Location & Seq

Genomic Coordinates Reverse (-)

50880588 .. 50888764

Gene Structure 8177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG310000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2946 bp

ATGGCGGACCCTCAGAACCAGAAGCCATGGAAGGTCGAGTACGCCAAGTCTTCACGATCGTCATGCAAAACCTGCAGAAACCCCATTGAAAAAGAGAACCTCCGCTTCGGCAAAATGGTCCAGGCCAAACAATTCGACGGCTTCATGCCCATGTGGAACCATGCTAGTTGCATAATGAAGAAGGCGAAGCAGATAAAATCAACTGATGATGTTGAAGGCCTTGAGCTCCTCCGGTGGGAAGATCAGAAGAAAATTAGAGATTATGTACAAAGTGGTGGATCTGGTGGTTCTGGTGGACCCTCGGATACAACCACTACAAGCAAGGCCAGTGCTACAGAAAGTGGTATTGAAGTTTCGCAAACTTCTCGGGCTACTTGCAGGCTCTGCAGCCAAAAGATTTTAAAAGGGGAGGTCCGTATATCAACCAAGCCTGAAGGTCAAGGAGCTAGGGGCTTGGCATGGCACCATGCGAAGTGTTTCATGGAATCATCACCATCTACCCAAGTGGAGAAGCTGTCTGGATGGGAGACCATCCCAGTTTCTGATCAGGCAGCTGTGTCTGCCTTAGTTAAGGATGGCAAAGAAGTTAAAGAGATCCTGCCACAGTCAACTTCTAAAGCTGGCACTAAACGAAGAAAAGATGGGGATGGTGATCAGAAGTCAAAAGTTTCGAAGTTGGAAGGTGACGTGTCAACAAGCAGGGATGTGTCTGTGAGTAATGCTACTGATATGGAGAGCAAAATGGAGGCGCAAACTAAAGAGCTGTGGGCTCTGAAAGATGATCTCAAAAAGCATGTGACAACTGTAGAGCTGCGTAAAATGCTTGAAGCCAATGATCAAGGTTCAACAGGATCAGAGCTTGATTTGCGTGAGCGCTGCGCTGATGGAATGATGTTTGGAGCACTTAGTACCTGCCCACTCTGTTCCGGTCATCTTCACTATTCTGGAGCCATGTACAGGTGCCATGGGTTCCTGACTGCATGGAGCAAGTGTTCTTACTCTACTCAAGAACCTGAACGTCGTAAAGGGAAGTGGAAAATCCCAGAAGATACAGATAATCAATTTCTGCAGAAGTGGTTTAAATCACAGAAGGTTAGCAAACCTACACGAATACTGCCACCACCATCATCTAACAATCCTGGAGGTCAAGCTTTCAATGGCCAATCTCAGTCTGGTGCAAGCTTGGCGGATTTGAAAGTTTCTTTTCGTGGATTACCAAAAGAATCCATGGAAAAGTGGAATAAAGATATAGAGGGTGTAGCTGGGTCCGTTCATGCCAAGATAAAAAAAGATACTAATTGCTTGGTTGTGGGTGGAGGACTGGATGATAAAGATGCTGAGATGAAAAAAGCAAGGAGGATGAAAATACCAATTGTTAGGGAGGATTATCTGGTTGATTGCTTTAAAAGAAAGAAGAAGCTTCCATTTGATCTTTACAAAGTTGAAGCTGTTGGTGAAGCCTCTAGCATGGTCACTGTCAAAGTGAAAGGGCGAAGTGCCGTTCATGAATCTTCTGGATTGCAAGATACAGGTCACATACTTGAGGATGGAAAAAGCATATATAATACAACTTTAAGCATGTCTGATTTGTCAACCGGTGTTAATAGTTATTACATCCTCCAAATTATACAAGATGATAAAAGTTCAGACTGCCATGTGTTCCGTAAATGGGGACGAGTAGGCAATGACAAAATTGGAGGAACCAAACTAGAAGAGATGTCAAAATATGATGCCATATCTGATTTTAAACGTTTGTTTCTTGAGAAGACCGGCAATTCATGGGAAGCATGGGAGAAAAAGCAAGATTTTCAGAAGCAACCAGGAAAATTCTTTCCATTGGATATTGATTATGGTGTTAACAAAGGGGTTTCAAAGAAAAATCAGAACAACGAACCCAGCAAATTGCCTCCTCAGTTAGCAGAGTTGATGAAGATGCTCTTCAACGTTGAAACATACAGAGCTGCCATGATGGAATTTGAGATAAATATGTCAGAGATGCCACTTGGAAAACTGAGTAAAAGCAATATCCAAAAGGGGTTTGAGGCATTAACGGAAATACAGAATCTATTAAAGAGTGATGGTGCCTCTTCCATAAAAGATAGCTTGATTGTAGATGCAAGCAATCGATTTTTCACAGTGATCCCTTCCATACATCCGCATATTATTAGGGATGAGGATGACTTTAAGTCAAAGTTGAAAATGCTAGAAGCTCTCCAGGACATTGAAATTGCTTCCAGATTAGTCGGTTTTGATGCTGATAGTGATGACTCTTTGGATGAGAAGTATAAGAAGCTCCGGTGTTGTATGAATCCACTTCCTCACGATAGTGAAGATTATCGGTTGATTGAAAAGTATCTTCTTACTACTCATGCCCCTACGCATACGGATTGGAGTCTGGAACTTGAAGAAGTTTTTTCACTTGAAAGGGAAGGGGAATTCGATAAATACGCTCCTTACCGGAAAAATCTTAAAAACAGAATGCTGCTTTGGCATGGTTCTCGGTTTACGAACTTTGTGGGAATACTTAGCCAAGGACTAAGAATAGCTCCTCCTGAAGCTCCAGCTACTGGTTATATGTTTGGCAAGGGGATTTACTTTGCTGACCTTGTCAGTAAGAGTGCTCAGTATTGCTATACAGATAAGAAAAATCCTGTGGGCCTCATGCTTTTAAGTGAAGTTGCCCTGGGAGAGATCCATGAGCTCCAGAAGGCCACATATATGGATAAACCTCCTAAGGGAAAGCACTCTACAAAGGGACTTGGCAGGAAAAAACCTGAGGAGTCGGACTATGTTAAATGGAGGGATGATGTCACTGTGCCCTGCGGCAAACCAGTGGATTCACATGTCAGGGCCTCTGGGCTGATGTATAATGAGTATATTGTTTATGATACAGCTCAAGTAAGTTATGAACTCTGTTCTTGTTTTTTTATCTTCCATATGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

981

Amino Acids

110.13

Weight (kDa)

8.61

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-PARP	PF00645	13 - 88	6.7e-22	Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
zf-PARP	PF00645	117 - 188	4.8e-12	Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
PADR1_N	PF21728	242 - 300	7.6e-21	PADR1, N-terminal helical domain
Zn_ribbon_PADR1	PF08063	301 - 341	4.3e-15	PADR1 domain, zinc ribbon fold
BRCT	PF00533	395 - 468	8.1e-09	BRCA1 C Terminus (BRCT) domain
WGR	PF05406	521 - 600	8e-17	WGR domain
PARP_reg	PF02877	633 - 762	4.8e-37	Poly(ADP-ribose) polymerase, regulatory domain
PARP	PF00644	776 - 968	8.5e-76	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31320
fragaria_vesca	FvH4_2g21980 FvH4_2g21980 FvH4_2g21980
malus_domestica	MD05G1201000.v1.1 MD10G1187800.v1.1
prunus_persica	Prupe.8G227600_v2.0.a1 Prupe.8G227600_v2.0.a1
pyrus_communis	pycom05g18780 pycom10g16230
rosa_chinensis	RchiOBHm_Chr6g0288861
rosa_laevigata	RLG00000012360
rosa_multiflora	Rmu_sc0005314.1_g000009
rosa_roxburghii	Rroxscaffold_7G00179830
rosa_rugosa	Rorug06G0198600 Rorug06G0198600 Rorug06G0198600 Rorug06G0198700 Rorug06G0198800 Rorug06G0198900 Rorug06G0198900
rosa_samantha	Rh6AG310000 Rh6BG315900 Rh6CG323400
rosa_wichuraiana	Rw6G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	80, 920
AccB1I	GGYRCC	3 cut(s)	462, 960, 2081
AccB7I	CCANNNNNTGG	1 cut(s)	2567
AciI	CCGC	5 cut(s)	5, 103, 1187, 2156, 2823
AclI	AACGTT	2 cut(s)	1750, 1944
AclWI	GGATC	5 cut(s)	286, 589, 859, 2134, 2686
AcoI	YGGCCR	1 cut(s)	1159
AcsI	RAATTY	3 cut(s)	1826, 1973, 2435
AcuI	CTGAAG	2 cut(s)	453, 2574
AfaI	GTAC	4 cut(s)	41, 267, 910, 956
AfeI	AGCGCT	1 cut(s)	875
AfiI	CCNNNNNNNGG	5 cut(s)	235, 957, 1669, 2567, 2735
AflIII	ACRYGT	2 cut(s)	687, 2842
AgeI	ACCGGT	1 cut(s)	1595
AhdI	GACNNNNNGTC	1 cut(s)	2185
AjiI	CACGTC	1 cut(s)	688
AjnI	CCWGG	5 cut(s)	120, 1138, 1819, 2214, 2682
AjuI	GAANNNNNNNTTGG	2 cut(s)	2470, 2502
AleI	CACNNNNGTG	1 cut(s)	2325
AloI	GAACNNNNNNTCC	2 cut(s)	976, 1008
Alw21I	GWGCWC	4 cut(s)	228, 904, 2623, 2703
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	5 cut(s)	286, 589, 859, 2134, 2686
AlwNI	CAGNNNCTG	3 cut(s)	384, 542, 2567
Ama87I	CYCGRG	1 cut(s)	366
Aor51HI	AGCGCT	1 cut(s)	875
AoxI	GGCC	7 cut(s)	123, 217, 324, 1159, 2656, 2709, 2850
ApeKI	GCWGC	6 cut(s)	387, 551, 811, 876, 1961, 2482
ApoI	RAATTY	3 cut(s)	1826, 1973, 2435
AsiGI	ACCGGT	1 cut(s)	1595
Asp700I	GAANNNNTTC	1 cut(s)	476
AspLEI	GCGC	3 cut(s)	751, 876, 881
AspS9I	GGNCC	7 cut(s)	7, 118, 296, 412, 1266, 2656, 2850
AsuHPI	GGTGA	4 cut(s)	483, 662, 695, 1466
AsuII	TTCGAA	1 cut(s)	671
AvaI	CYCGRG	1 cut(s)	366
AvaII	GGWCC	5 cut(s)	7, 118, 296, 412, 1266
AxyI	CCTNAGG	2 cut(s)	2733, 2775
BaeGI	GKGCMC	1 cut(s)	2820
BalI	TGGCCA	1 cut(s)	1161
BanI	GGYRCC	3 cut(s)	462, 960, 2081
BanII	GRGCYC	3 cut(s)	228, 772, 2703
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BbsI	GAAGAC	2 cut(s)	42, 1772
Bbv12I	GWGCWC	4 cut(s)	228, 904, 2623, 2703
BbvI	GCAGC	6 cut(s)	399, 563, 798, 863, 1948, 2469
BceAI	ACGGC	2 cut(s)	154, 1484
BcgI	CGANNNNNNTGC	6 cut(s)	45, 79, 347, 381, 2480, 2514
BciT130I	CCWGG	5 cut(s)	122, 1140, 1821, 2216, 2684
BciVI	GTATCC	1 cut(s)	298
BclI	TGATCA	3 cut(s)	544, 652, 835
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	5 cut(s)	165, 447, 1464, 1709, 2204
BfmI	CTRYAG	5 cut(s)	73, 333, 385, 804, 1067
BfoI	RGCGCY	1 cut(s)	877
BfuAI	ACCTGC	2 cut(s)	80, 920
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	7 cut(s)	388, 552, 812, 877, 1962, 2483, 2824
BlsI	GCNGC	7 cut(s)	389, 553, 813, 878, 1963, 2484, 2825
Bme1390I	CCNGG	5 cut(s)	122, 1140, 1821, 2216, 2684
Bme18I	GGWCC	5 cut(s)	7, 118, 296, 412, 1266
BmeRI	GACNNNNNGTC	1 cut(s)	2185
BmeT110I	CYCGRG	1 cut(s)	366
BmgBI	CACGTC	1 cut(s)	688
BmgT120I	GGNCC	7 cut(s)	7, 118, 296, 412, 1266, 2656, 2850
BmrFI	CCNGG	5 cut(s)	122, 1140, 1821, 2216, 2684
BmrI	ACTGGG	1 cut(s)	530
BmsI	GCATC	6 cut(s)	1324, 1720, 1923, 1986, 2104, 2242
BmuI	ACTGGG	1 cut(s)	530
BpiI	GAAGAC	2 cut(s)	42, 1772
BpmI	CTGGAG	5 cut(s)	966, 1161, 2198, 2544, 2687
Bpu14I	TTCGAA	1 cut(s)	671
BpuEI	CTTGAG	5 cut(s)	242, 990, 1562, 1781, 2880
Bsa29I	ATCGAT	1 cut(s)	2125
BsaBI	GATNNNNATC	1 cut(s)	651
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	7 cut(s)	26, 300, 964, 1227, 2530, 2682, 2683
BsaWI	WCCGGW	5 cut(s)	231, 926, 1595, 2295, 2457
BsaXI	ACNNNNNCTCC	4 cut(s)	500, 530, 976, 1006
Bsc4I	CCNNNNNNNGG	5 cut(s)	235, 957, 1669, 2567, 2735
Bse118I	RCCGGY	2 cut(s)	1595, 1769
Bse1I	ACTGG	5 cut(s)	327, 536, 1326, 2572, 2831
Bse21I	CCTNAGG	2 cut(s)	2733, 2775
Bse3DI	GCAATG	1 cut(s)	1690
Bse8I	GATNNNNATC	1 cut(s)	651
BseBI	CCWGG	5 cut(s)	122, 1140, 1821, 2216, 2684
BseCI	ATCGAT	1 cut(s)	2125
BseDI	CCNNGG	7 cut(s)	26, 300, 964, 1227, 2530, 2682, 2683
BseJI	GATNNNNATC	1 cut(s)	651
BseLI	CCNNNNNNNGG	5 cut(s)	235, 957, 1669, 2567, 2735
BseMI	GCAATG	1 cut(s)	1690
BseMII	CTCAG	7 cut(s)	26, 1181, 1329, 1925, 2003, 2636, 2766
BseNI	ACTGG	5 cut(s)	327, 536, 1326, 2572, 2831
BseRI	GAGGAG	4 cut(s)	218, 1899, 2538, 2792
BseSI	GKGCMC	1 cut(s)	2820
BseXI	GCAGC	6 cut(s)	399, 563, 798, 863, 1948, 2469
BseYI	CCCAGC	2 cut(s)	1262, 1895
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	7 cut(s)	125, 219, 326, 1161, 2658, 2711, 2852
BshNI	GGYRCC	3 cut(s)	462, 960, 2081
BshTI	ACCGGT	1 cut(s)	1595
BshVI	ATCGAT	1 cut(s)	2125
BsiEI	CGRYCG	1 cut(s)	59
BsiHKAI	GWGCWC	4 cut(s)	228, 904, 2623, 2703
BsiHKCI	CYCGRG	1 cut(s)	366
BsiSI	CCGG	6 cut(s)	232, 927, 1596, 1770, 2296, 2458
BslFI	GGGAC	2 cut(s)	1686, 2769
BslI	CCNNNNNNNGG	5 cut(s)	235, 957, 1669, 2567, 2735
BsmAI	GTCTC	1 cut(s)	521
BsmFI	GGGAC	2 cut(s)	1686, 2769
BsmI	GAATGC	1 cut(s)	2484
BsnI	GGCC	7 cut(s)	125, 219, 326, 1161, 2658, 2711, 2852
Bso31I	GGTCTC	1 cut(s)	521
BsoBI	CYCGRG	1 cut(s)	366
Bsp119I	TTCGAA	1 cut(s)	671
Bsp1286I	GDGCHC	6 cut(s)	228, 772, 904, 2623, 2703, 2820
Bsp1407I	TGTACA	2 cut(s)	265, 954
Bsp19I	CCATGG	3 cut(s)	26, 964, 1227
BspACI	CCGC	5 cut(s)	5, 103, 1187, 2156, 2823
BspANI	GGCC	7 cut(s)	125, 219, 326, 1161, 2658, 2711, 2852
BspCNI	CTCAG	7 cut(s)	25, 1180, 1330, 1924, 2004, 2635, 2767
BspDI	ATCGAT	1 cut(s)	2125
BspHI	TCATGA	1 cut(s)	1504
BspMAI	CTGCAG	3 cut(s)	77, 389, 1071
BspMI	ACCTGC	2 cut(s)	80, 920
BspPI	GGATC	5 cut(s)	286, 589, 859, 2134, 2686
BspQI	GCTCTTC	1 cut(s)	1943
BspT104I	TTCGAA	1 cut(s)	671
BspT107I	GGYRCC	3 cut(s)	462, 960, 2081
BspTNI	GGTCTC	1 cut(s)	521
BsrDI	GCAATG	1 cut(s)	1690
BsrFI	RCCGGY	2 cut(s)	1595, 1769
BsrGI	TGTACA	2 cut(s)	265, 954
BsrI	ACTGG	5 cut(s)	327, 536, 1326, 2572, 2831
BssAI	RCCGGY	2 cut(s)	1595, 1769
BssECI	CCNNGG	7 cut(s)	26, 300, 964, 1227, 2530, 2682, 2683
BssT1I	CCWWGG	4 cut(s)	26, 964, 1227, 2530
Bst2UI	CCWGG	5 cut(s)	122, 1140, 1821, 2216, 2684
Bst4CI	ACNGT	5 cut(s)	606, 805, 1477, 2137, 2815
Bst6I	CTCTTC	3 cut(s)	1707, 1943, 2092
BstAPI	GCANNNNNTGC	2 cut(s)	72, 384
BstAUI	TGTACA	2 cut(s)	265, 954
BstBI	TTCGAA	1 cut(s)	671
BstC8I	GCNNGC	4 cut(s)	380, 622, 1180, 2119
BstDSI	CCRYGG	3 cut(s)	26, 964, 1227
BstH2I	RGCGCY	1 cut(s)	877
BstHHI	GCGC	3 cut(s)	751, 876, 881
BstMAI	GTCTC	1 cut(s)	521
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	7 cut(s)	72, 384, 560, 820, 865, 1184, 2488
BstNI	CCWGG	5 cut(s)	122, 1140, 1821, 2216, 2684
BstNSI	RCATGY	3 cut(s)	797, 1582, 2846
BstSCI	CCNGG	5 cut(s)	120, 1138, 1819, 2214, 2682
BstSFI	CTRYAG	5 cut(s)	73, 333, 385, 804, 1067
BstSLI	GKGCMC	1 cut(s)	2820
BstV1I	GCAGC	6 cut(s)	399, 563, 798, 863, 1948, 2469
BstV2I	GAAGAC	2 cut(s)	42, 1772
BstX2I	RGATCY	3 cut(s)	278, 594, 2691
BstXI	CCANNNNNNTGG	1 cut(s)	2719
BstYI	RGATCY	3 cut(s)	278, 594, 2691
Bsu15I	ATCGAT	1 cut(s)	2125
Bsu36I	CCTNAGG	2 cut(s)	2733, 2775
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	7 cut(s)	125, 219, 326, 1161, 2658, 2711, 2852
BsuTUI	ATCGAT	1 cut(s)	2125
BtgI	CCRYGG	3 cut(s)	26, 964, 1227
BtrI	CACGTC	1 cut(s)	688
BtsIMutI	CAGTG	5 cut(s)	334, 1473, 2142, 2811, 2838
BveI	ACCTGC	2 cut(s)	80, 920
Cac8I	GCNNGC	4 cut(s)	380, 622, 1180, 2119
CaiI	CAGNNNCTG	3 cut(s)	384, 542, 2567
CciI	TCATGA	1 cut(s)	1504
CfoI	GCGC	3 cut(s)	751, 876, 881
Cfr10I	RCCGGY	2 cut(s)	1595, 1769
Cfr13I	GGNCC	7 cut(s)	7, 118, 296, 412, 1266, 2656, 2850
ClaI	ATCGAT	1 cut(s)	2125
Csp6I	GTAC	4 cut(s)	40, 266, 909, 955
CspAI	ACCGGT	1 cut(s)	1595
CviQI	GTAC	4 cut(s)	40, 266, 909, 955
DraI	TTTAAA	4 cut(s)	402, 1081, 1405, 1747
DriI	GACNNNNNGTC	1 cut(s)	2185
EaeI	YGGCCR	1 cut(s)	1159
Eam1104I	CTCTTC	3 cut(s)	1707, 1943, 2092
Eam1105I	GACNNNNNGTC	1 cut(s)	2185
EarI	CTCTTC	3 cut(s)	1707, 1943, 2092
EciI	GGCGGA	2 cut(s)	20, 1202
Ecl136II	GAGCTC	2 cut(s)	226, 2701
Eco130I	CCWWGG	4 cut(s)	26, 964, 1227, 2530
Eco147I	AGGCCT	1 cut(s)	219
Eco24I	GRGCYC	3 cut(s)	228, 772, 2703
Eco31I	GGTCTC	1 cut(s)	521
Eco47I	GGWCC	5 cut(s)	7, 118, 296, 412, 1266
Eco47III	AGCGCT	1 cut(s)	875
Eco53kI	GAGCTC	2 cut(s)	226, 2701
Eco57I	CTGAAG	2 cut(s)	453, 2574
Eco81I	CCTNAGG	2 cut(s)	2733, 2775
Eco88I	CYCGRG	1 cut(s)	366
EcoICRI	GAGCTC	2 cut(s)	226, 2701
EcoO109I	RGGNCCY	1 cut(s)	2850
EcoRI	GAATTC	1 cut(s)	2435
EcoRII	CCWGG	5 cut(s)	120, 1138, 1819, 2214, 2682
EcoT14I	CCWWGG	4 cut(s)	26, 964, 1227, 2530
EcoT38I	GRGCYC	3 cut(s)	228, 772, 2703
ErhI	CCWWGG	4 cut(s)	26, 964, 1227, 2530
FalI	AAGNNNNNCTT	2 cut(s)	1922, 1954
FaqI	GGGAC	2 cut(s)	1686, 2769
FauNDI	CATATG	1 cut(s)	2937
FbaI	TGATCA	3 cut(s)	544, 652, 835
Fnu4HI	GCNGC	7 cut(s)	388, 552, 812, 877, 1962, 2483, 2824
FriOI	GRGCYC	3 cut(s)	228, 772, 2703
Fsp4HI	GCNGC	7 cut(s)	388, 552, 812, 877, 1962, 2483, 2824
FspBI	CTAG	5 cut(s)	165, 447, 1464, 1709, 2204
GlaI	GCGC	3 cut(s)	750, 875, 880
GluI	GCNGC	7 cut(s)	388, 552, 812, 877, 1962, 2483, 2824
GsaI	CCCAGC	2 cut(s)	1266, 1899
GsuI	CTGGAG	5 cut(s)	966, 1161, 2198, 2544, 2687
HaeII	RGCGCY	1 cut(s)	877
HaeIII	GGCC	7 cut(s)	125, 219, 326, 1161, 2658, 2711, 2852
HapII	CCGG	6 cut(s)	232, 927, 1596, 1770, 2296, 2458
HhaI	GCGC	3 cut(s)	751, 876, 881
Hin6I	GCGC	3 cut(s)	749, 874, 879
HinP1I	GCGC	3 cut(s)	749, 874, 879
HincII	GTYRAC	4 cut(s)	609, 693, 1593, 1858
HindII	GTYRAC	4 cut(s)	609, 693, 1593, 1858
HindIII	AAGCTT	3 cut(s)	1149, 1180, 1418
HinfI	GANTC	9 cut(s)	485, 1223, 1508, 2062, 2267, 2308, 2392, 2780, 2837
HpaI	GTTAAC	1 cut(s)	1858
HpaII	CCGG	6 cut(s)	232, 927, 1596, 1770, 2296, 2458
HphI	GGTGA	4 cut(s)	483, 662, 695, 1466
Hpy166II	GTNNAC	6 cut(s)	296, 609, 693, 1593, 1858, 2505
Hpy8I	GTNNAC	6 cut(s)	296, 609, 693, 1593, 1858, 2505
Hpy99I	CGWCG	2 cut(s)	140, 1023
HpyAV	CCTTC	9 cut(s)	25, 175, 209, 428, 674, 1084, 2154, 2423, 2701
HpyCH4III	ACNGT	5 cut(s)	606, 805, 1477, 2137, 2815
HpyCH4IV	ACGT	4 cut(s)	687, 1018, 1750, 1944
HpyF10VI	GCNNNNNNNGC	7 cut(s)	72, 384, 560, 820, 865, 1184, 2488
HpySE526I	ACGT	4 cut(s)	687, 1018, 1750, 1944
HspAI	GCGC	3 cut(s)	749, 874, 879
Ksp22I	TGATCA	3 cut(s)	544, 652, 835
KspAI	GTTAAC	1 cut(s)	1858
LguI	GCTCTTC	1 cut(s)	1943
Lsp1109I	GCAGC	6 cut(s)	399, 563, 798, 863, 1948, 2469
LweI	GCATC	6 cut(s)	1324, 1720, 1923, 1986, 2104, 2242
MaeI	CTAG	5 cut(s)	165, 447, 1464, 1709, 2204
MaeII	ACGT	4 cut(s)	687, 1018, 1750, 1944
MaeIII	GTNAC	5 cut(s)	683, 796, 1471, 1532, 2809
MfeI	CAATTG	1 cut(s)	1371
MflI	RGATCY	3 cut(s)	278, 594, 2691
MhlI	GDGCHC	6 cut(s)	228, 772, 904, 2623, 2703, 2820
MlsI	TGGCCA	1 cut(s)	1161
MluNI	TGGCCA	1 cut(s)	1161
MlyI	GAGTC	3 cut(s)	2261, 2401, 2789
MmeI	TCCRAC	2 cut(s)	657, 2763
Mox20I	TGGCCA	1 cut(s)	1161
MroXI	GAANNNNTTC	1 cut(s)	476
MscI	TGGCCA	1 cut(s)	1161
MslI	CAYNNNNRTG	3 cut(s)	149, 2325, 2717
Msp20I	TGGCCA	1 cut(s)	1161
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	6 cut(s)	232, 927, 1596, 1770, 2296, 2458
MspR9I	CCNGG	5 cut(s)	122, 1140, 1821, 2216, 2684
MteI	GCGCNGCGC	1 cut(s)	877
MunI	CAATTG	1 cut(s)	1371
Mva1269I	GAATGC	1 cut(s)	2484
MvaI	CCWGG	5 cut(s)	122, 1140, 1821, 2216, 2684
MwoI	GCNNNNNNNGC	7 cut(s)	72, 384, 560, 820, 865, 1184, 2488
NcoI	CCATGG	3 cut(s)	26, 964, 1227
NdeI	CATATG	1 cut(s)	2937
NmuCI	GTSAC	5 cut(s)	683, 796, 1471, 1532, 2809
NspI	RCATGY	3 cut(s)	797, 1582, 2846
NspV	TTCGAA	1 cut(s)	671
OliI	CACNNNNGTG	1 cut(s)	2325
PagI	TCATGA	1 cut(s)	1504
PasI	CCCWGGG	1 cut(s)	2683
PceI	AGGCCT	1 cut(s)	219
PciI	ACATGT	1 cut(s)	2842
PciSI	GCTCTTC	1 cut(s)	1943
PctI	GAATGC	1 cut(s)	2484
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	6 cut(s)	485, 1223, 1508, 2062, 2308, 2837
PflFI	GACNNNGTC	1 cut(s)	2606
PflMI	CCANNNNNTGG	1 cut(s)	2567
PfoI	TCCNGGA	2 cut(s)	1138, 2214
PinAI	ACCGGT	1 cut(s)	1595
PkrI	GCNGC	7 cut(s)	389, 553, 813, 878, 1963, 2484, 2825
Ple19I	CGATCG	1 cut(s)	59
PleI	GAGTC	3 cut(s)	2261, 2400, 2788
PpsI	GAGTC	3 cut(s)	2261, 2400, 2788
PscI	ACATGT	1 cut(s)	2842
Psp124BI	GAGCTC	2 cut(s)	228, 2703
Psp1406I	AACGTT	2 cut(s)	1750, 1944
Psp6I	CCWGG	5 cut(s)	120, 1138, 1819, 2214, 2682
PspFI	CCCAGC	2 cut(s)	1262, 1895
PspGI	CCWGG	5 cut(s)	120, 1138, 1819, 2214, 2682
PspPI	GGNCC	7 cut(s)	7, 118, 296, 412, 1266, 2656, 2850
PstI	CTGCAG	3 cut(s)	77, 389, 1071
PstNI	CAGNNNCTG	3 cut(s)	384, 542, 2567
PsuI	RGATCY	3 cut(s)	278, 594, 2691
PsyI	GACNNNGTC	1 cut(s)	2606
PvuI	CGATCG	1 cut(s)	59
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	4 cut(s)	41, 267, 910, 956
RsaNI	GTAC	4 cut(s)	40, 266, 909, 955
RseI	CAYNNNNRTG	3 cut(s)	149, 2325, 2717
SacI	GAGCTC	2 cut(s)	228, 2703
SapI	GCTCTTC	1 cut(s)	1943
SatI	GCNGC	7 cut(s)	388, 552, 812, 877, 1962, 2483, 2824
Sau96I	GGNCC	7 cut(s)	7, 118, 296, 412, 1266, 2656, 2850
SchI	GAGTC	3 cut(s)	2261, 2401, 2789
ScrFI	CCNGG	5 cut(s)	122, 1140, 1821, 2216, 2684
SduI	GDGCHC	6 cut(s)	228, 772, 904, 2623, 2703, 2820
SfaNI	GCATC	6 cut(s)	1324, 1720, 1923, 1986, 2104, 2242
SfcI	CTRYAG	5 cut(s)	73, 333, 385, 804, 1067
SfuI	TTCGAA	1 cut(s)	671
SinI	GGWCC	5 cut(s)	7, 118, 296, 412, 1266
SmiMI	CAYNNNNRTG	3 cut(s)	149, 2325, 2717
SmlI	CTYRAG	5 cut(s)	221, 1005, 1541, 1760, 2895
SmoI	CTYRAG	5 cut(s)	221, 1005, 1541, 1760, 2895
SseBI	AGGCCT	1 cut(s)	219
SsiI	CCGC	5 cut(s)	5, 103, 1187, 2156, 2823
SspMI	CTAG	5 cut(s)	165, 447, 1464, 1709, 2204
SstI	GAGCTC	2 cut(s)	228, 2703
StuI	AGGCCT	1 cut(s)	219
StyD4I	CCNGG	5 cut(s)	120, 1138, 1819, 2214, 2682
StyI	CCWWGG	4 cut(s)	26, 964, 1227, 2530
TaaI	ACNGT	5 cut(s)	606, 805, 1477, 2137, 2815
TaiI	ACGT	4 cut(s)	690, 1021, 1753, 1947
TaqI	TCGA	5 cut(s)	36, 135, 671, 2125, 2439
TatI	WGTACW	2 cut(s)	265, 954
TauI	GCSGC	1 cut(s)	2826
TfiI	GAWTC	6 cut(s)	485, 1223, 1508, 2062, 2308, 2837
TscAI	CASTG	5 cut(s)	334, 1480, 2142, 2818, 2838
TseFI	GTSAC	5 cut(s)	683, 796, 1471, 1532, 2809
TseI	GCWGC	6 cut(s)	387, 551, 811, 876, 1961, 2482
Tsp45I	GTSAC	5 cut(s)	683, 796, 1471, 1532, 2809
TspGWI	ACGGA	5 cut(s)	404, 1258, 1652, 2066, 2399
TspRI	CASTG	5 cut(s)	334, 1480, 2142, 2818, 2838
Tth111I	GACNNNGTC	1 cut(s)	2606
Van91I	CCANNNNNTGG	1 cut(s)	2567
VpaK11BI	GGWCC	5 cut(s)	7, 118, 296, 412, 1266
XapI	RAATTY	3 cut(s)	1826, 1973, 2435
XceI	RCATGY	3 cut(s)	797, 1582, 2846
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1169
XmnI	GAANNNNTTC	1 cut(s)	476
XspI	CTAG	5 cut(s)	165, 447, 1464, 1709, 2204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.