Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007152

Physical Location & Seq

Genomic Coordinates Reverse (-)

31976236 .. 31983759

Gene Structure 7524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0198700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGACGTTTTCTGCTAAGAATGTTACATGTTACAATATAGATATCAGGTTTTCTGGGTTCTATGCAAAAGAGTATATGCTTGATTTTCGTGCCGCTGTTCCTCTGCATATTGCTTACAGCTATTTCAACGCTGATCATCATGGATGCATTGACCTTGGTGGCCTCTTCAAAGTGACTGCAGGAAACATTGGTTTCTCAGTGATTACATGCTCTTCCAACGGAAGGGGGCCTGATTCAGTGAAGAACGAAGTGAAGAGTGTGGAACAGTTGGCTCAAGAGAAAAGGCGAGCTGACCTGTCTGCTCGGACTGCCTCAGAAGAGTTCACTGTGAATAAATCTGGTCAGTGGAAGAGATGGGTTTTGCAGCAGAATCTCAGCCAAAGCAGGGAATGCCCTGAGGAATGTAAGGAAGCTATTGCACCACTGATGCTTGCTGCAGCTAGATTTTCTGGTTTACCAAATTTTTCATGTGTTCTACTATATGACAAGCTTCGCTTTCGAAAGGCACAAGATTTGTTATGTAGTTCAGAATTTTTAATCCTGCAGCTGAGAGTCAGCAAAAAAGCTCCCCAAACTAAGCGGGTTGTTGACAACAAATTACTGGAGGCTGATCATCATGGATGCATTGACCTTGGTGGCCTCTTCAAACTGACTGCAGGTTATGAGAAAAGTGTATCAATTTCTGTCTACTCCAACAATGATGTTTTACTGAATCTTCAGTCTCAAACTGAGAAAAGGGTGTTGATAAATTCATCAAAGGTGCCTGACGTTTGCGTGGCTGGTACTCAGATGGAAAATATGGTTTTTGAAATTGTCAGCTCTGATGGTGTTGTTGATGATACTATTCATCATGACGAGAAAAGTGGCCAATTACATATAGCTACAATAATGGCCGGTTCATCATCCATGGAGGAATCCCTTCGATACACATTCAAGCATGGACGCTGTACAATACCAAGACCCCCACACCCTACCTCGAAGAGTAGGGACTTATTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

333

Amino Acids

37.16

Weight (kDa)

8.26

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31320
fragaria_vesca	FvH4_2g21980 FvH4_2g21980 FvH4_2g21980
malus_domestica	MD05G1201000.v1.1 MD10G1187800.v1.1
prunus_persica	Prupe.8G227600_v2.0.a1 Prupe.8G227600_v2.0.a1
pyrus_communis	pycom05g18780 pycom10g16230
rosa_chinensis	RchiOBHm_Chr6g0288861
rosa_laevigata	RLG00000012360
rosa_multiflora	Rmu_sc0005314.1_g000009
rosa_roxburghii	Rroxscaffold_7G00179830
rosa_rugosa	Rorug06G0198600 Rorug06G0198600 Rorug06G0198600 Rorug06G0198700 Rorug06G0198800 Rorug06G0198900 Rorug06G0198900
rosa_samantha	Rh6AG310000 Rh6BG315900 Rh6CG323400
rosa_wichuraiana	Rw6G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	647
AccB1I	GGYRCC	1 cut(s)	760
AccI	GTMKAC	1 cut(s)	687
AciI	CCGC	2 cut(s)	93, 580
AcoI	YGGCCR	2 cut(s)	865, 891
AcsI	RAATTY	3 cut(s)	460, 530, 748
AcuI	CTGAAG	1 cut(s)	701
AfaI	GTAC	2 cut(s)	784, 949
AfiI	CCNNNNNNNGG	2 cut(s)	222, 385
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	5 cut(s)	127, 169, 646, 809, 934
AluBI	AGCT	9 cut(s)	120, 290, 413, 440, 490, 547, 566, 819, 881
AluI	AGCT	9 cut(s)	120, 290, 413, 440, 490, 547, 566, 819, 881
Alw26I	GTCTC	1 cut(s)	726
AoxI	GGCC	5 cut(s)	160, 227, 637, 865, 891
ApeKI	GCWGC	4 cut(s)	364, 434, 437, 544
ApoI	RAATTY	3 cut(s)	460, 530, 748
Asp700I	GAANNNNTTC	1 cut(s)	918
AspS9I	GGNCC	1 cut(s)	227
AsuII	TTCGAA	1 cut(s)	499
AxyI	CCTNAGG	1 cut(s)	396
BalI	TGGCCA	1 cut(s)	867
BanI	GGYRCC	1 cut(s)	760
BbvI	GCAGC	4 cut(s)	376, 421, 449, 556
BccI	CCATC	3 cut(s)	348, 784, 818
BclI	TGATCA	2 cut(s)	133, 610
BcoDI	GTCTC	1 cut(s)	726
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	4 cut(s)	177, 435, 542, 654
BfuAI	ACCTGC	1 cut(s)	647
BisI	GCNGC	5 cut(s)	93, 365, 435, 438, 545
BlsI	GCNGC	5 cut(s)	94, 366, 436, 439, 546
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	228, 762
BmsI	GCATC	3 cut(s)	134, 417, 611
BpmI	CTGGAG	1 cut(s)	623
Bpu14I	TTCGAA	1 cut(s)	499
BpuEI	CTTGAG	1 cut(s)	258
BsaJI	CCNNGG	3 cut(s)	154, 631, 906
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 385
Bse118I	RCCGGY	1 cut(s)	893
Bse1I	ACTGG	1 cut(s)	606
Bse21I	CCTNAGG	1 cut(s)	396
BseDI	CCNNGG	3 cut(s)	154, 631, 906
BseGI	GGATG	3 cut(s)	149, 626, 902
BseLI	CCNNNNNNNGG	2 cut(s)	222, 385
BseMII	CTCAG	7 cut(s)	210, 327, 387, 388, 539, 720, 800
BseNI	ACTGG	1 cut(s)	606
BseXI	GCAGC	4 cut(s)	376, 421, 449, 556
BshFI	GGCC	5 cut(s)	162, 229, 639, 867, 893
BshNI	GGYRCC	1 cut(s)	760
BsiSI	CCGG	1 cut(s)	894
BslI	CCNNNNNNNGG	2 cut(s)	222, 385
BsmAI	GTCTC	1 cut(s)	726
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	5 cut(s)	162, 229, 639, 867, 893
Bsp119I	TTCGAA	1 cut(s)	499
Bsp1407I	TGTACA	1 cut(s)	947
Bsp143I	GATC	2 cut(s)	133, 610
Bsp19I	CCATGG	1 cut(s)	906
BspACI	CCGC	2 cut(s)	93, 580
BspANI	GGCC	5 cut(s)	162, 229, 639, 867, 893
BspCNI	CTCAG	7 cut(s)	209, 326, 387, 388, 540, 721, 799
BspHI	TCATGA	1 cut(s)	850
BspLI	GGNNCC	2 cut(s)	228, 762
BspMAI	CTGCAG	4 cut(s)	181, 439, 546, 658
BspMI	ACCTGC	1 cut(s)	647
BspQI	GCTCTTC	1 cut(s)	217
BspT104I	TTCGAA	1 cut(s)	499
BspT107I	GGYRCC	1 cut(s)	760
BsrFI	RCCGGY	1 cut(s)	893
BsrGI	TGTACA	1 cut(s)	947
BsrI	ACTGG	1 cut(s)	606
BssAI	RCCGGY	1 cut(s)	893
BssECI	CCNNGG	3 cut(s)	154, 631, 906
BssMI	GATC	2 cut(s)	133, 610
BssT1I	CCWWGG	3 cut(s)	154, 631, 906
Bst4CI	ACNGT	2 cut(s)	267, 328
Bst6I	CTCTTC	7 cut(s)	170, 217, 248, 312, 344, 647, 974
BstAPI	GCANNNNNTGC	1 cut(s)	390
BstAUI	TGTACA	1 cut(s)	947
BstBI	TTCGAA	1 cut(s)	499
BstC8I	GCNNGC	2 cut(s)	288, 432
BstDEI	CTNAG	9 cut(s)	15, 196, 313, 374, 396, 548, 576, 729, 786
BstDSI	CCRYGG	1 cut(s)	906
BstF5I	GGATG	3 cut(s)	149, 626, 902
BstKTI	GATC	2 cut(s)	136, 613
BstMAI	GTCTC	1 cut(s)	726
BstMBI	GATC	2 cut(s)	133, 610
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 390
BstNSI	RCATGY	2 cut(s)	30, 210
BstSFI	CTRYAG	4 cut(s)	177, 435, 542, 654
BstV1I	GCAGC	4 cut(s)	376, 421, 449, 556
Bsu36I	CCTNAGG	1 cut(s)	396
BsuRI	GGCC	5 cut(s)	162, 229, 639, 867, 893
BtgI	CCRYGG	1 cut(s)	906
BtsCI	GGATG	3 cut(s)	149, 626, 902
BtsIMutI	CAGTG	5 cut(s)	204, 243, 324, 350, 422
BveI	ACCTGC	1 cut(s)	647
Cac8I	GCNNGC	2 cut(s)	288, 432
CciI	TCATGA	1 cut(s)	850
Cfr10I	RCCGGY	1 cut(s)	893
Cfr13I	GGNCC	1 cut(s)	227
CseI	GACGC	1 cut(s)	951
Csp6I	GTAC	2 cut(s)	783, 948
CviAII	CATG	8 cut(s)	27, 140, 207, 468, 617, 851, 907, 938
CviQI	GTAC	2 cut(s)	783, 948
DdeI	CTNAG	9 cut(s)	15, 196, 313, 374, 396, 548, 576, 729, 786
DpnI	GATC	2 cut(s)	135, 612
DpnII	GATC	2 cut(s)	133, 610
EaeI	YGGCCR	2 cut(s)	865, 891
Eam1104I	CTCTTC	7 cut(s)	170, 217, 248, 312, 344, 647, 974
EarI	CTCTTC	7 cut(s)	170, 217, 248, 312, 344, 647, 974
Eco130I	CCWWGG	3 cut(s)	154, 631, 906
Eco32I	GATATC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	701
Eco81I	CCTNAGG	1 cut(s)	396
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRV	GATATC	1 cut(s)	43
EcoT14I	CCWWGG	3 cut(s)	154, 631, 906
EcoT22I	ATGCAT	2 cut(s)	149, 626
ErhI	CCWWGG	3 cut(s)	154, 631, 906
FaeI	CATG	8 cut(s)	30, 143, 210, 471, 620, 854, 910, 941
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FatI	CATG	8 cut(s)	26, 139, 206, 467, 616, 850, 906, 937
FauI	CCCGC	1 cut(s)	573
FbaI	TGATCA	2 cut(s)	133, 610
FblI	GTMKAC	1 cut(s)	687
Fnu4HI	GCNGC	5 cut(s)	93, 365, 435, 438, 545
FokI	GGATG	3 cut(s)	156, 633, 889
Fsp4HI	GCNGC	5 cut(s)	93, 365, 435, 438, 545
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	5 cut(s)	93, 365, 435, 438, 545
GsuI	CTGGAG	1 cut(s)	623
HaeIII	GGCC	5 cut(s)	162, 229, 639, 867, 893
HapII	CCGG	1 cut(s)	894
HgaI	GACGC	1 cut(s)	951
Hin1II	CATG	8 cut(s)	30, 143, 210, 471, 620, 854, 910, 941
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	5 cut(s)	233, 370, 552, 712, 914
HpaII	CCGG	1 cut(s)	894
Hpy166II	GTNNAC	4 cut(s)	324, 455, 589, 688
Hpy188I	TCNGA	5 cut(s)	306, 316, 529, 789, 823
Hpy188III	TCNNGA	2 cut(s)	275, 851
Hpy8I	GTNNAC	4 cut(s)	324, 455, 589, 688
HpyAV	CCTTC	2 cut(s)	216, 929
HpyCH4III	ACNGT	2 cut(s)	267, 328
HpyCH4IV	ACGT	2 cut(s)	5, 768
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 390
HpyF3I	CTNAG	9 cut(s)	15, 196, 313, 374, 396, 548, 576, 729, 786
HpySE526I	ACGT	2 cut(s)	5, 768
Hsp92II	CATG	8 cut(s)	30, 143, 210, 471, 620, 854, 910, 941
Ksp22I	TGATCA	2 cut(s)	133, 610
Kzo9I	GATC	2 cut(s)	133, 610
LguI	GCTCTTC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	571
Lsp1109I	GCAGC	4 cut(s)	376, 421, 449, 556
LweI	GCATC	3 cut(s)	134, 417, 611
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	2 cut(s)	5, 768
MaeIII	GTNAC	3 cut(s)	22, 29, 172
MalI	GATC	2 cut(s)	135, 612
MboI	GATC	2 cut(s)	133, 610
MboII	GAAGA	9 cut(s)	157, 204, 253, 265, 329, 361, 634, 707, 991
MlsI	TGGCCA	1 cut(s)	867
MluCI	AATT	7 cut(s)	460, 530, 596, 678, 748, 810, 869
MluNI	TGGCCA	1 cut(s)	867
MlyI	GAGTC	1 cut(s)	561
MmeI	TCCRAC	2 cut(s)	240, 717
MnlI	CCTC	8 cut(s)	111, 173, 322, 391, 598, 650, 904, 985
Mox20I	TGGCCA	1 cut(s)	867
Mph1103I	ATGCAT	2 cut(s)	149, 626
MroXI	GAANNNNTTC	1 cut(s)	918
MscI	TGGCCA	1 cut(s)	867
MseI	TTAA	2 cut(s)	536, 1000
Msp20I	TGGCCA	1 cut(s)	867
MspA1I	CMGCKG	2 cut(s)	95, 547
MspI	CCGG	1 cut(s)	894
Mva1269I	GAATGC	1 cut(s)	395
MwoI	GCNNNNNNNGC	2 cut(s)	308, 390
NcoI	CCATGG	1 cut(s)	906
NdeII	GATC	2 cut(s)	133, 610
NlaIII	CATG	8 cut(s)	30, 143, 210, 471, 620, 854, 910, 941
NlaIV	GGNNCC	2 cut(s)	228, 762
NmuCI	GTSAC	1 cut(s)	172
NsiI	ATGCAT	2 cut(s)	149, 626
NspI	RCATGY	2 cut(s)	30, 210
NspV	TTCGAA	1 cut(s)	499
PagI	TCATGA	1 cut(s)	850
PciI	ACATGT	1 cut(s)	26
PciSI	GCTCTTC	1 cut(s)	217
PctI	GAATGC	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	918
PfeI	GAWTC	4 cut(s)	233, 370, 712, 914
PkrI	GCNGC	5 cut(s)	94, 366, 436, 439, 546
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
PscI	ACATGT	1 cut(s)	26
PspN4I	GGNNCC	2 cut(s)	228, 762
PspPI	GGNCC	1 cut(s)	227
PstI	CTGCAG	4 cut(s)	181, 439, 546, 658
PvuII	CAGCTG	1 cut(s)	547
RsaI	GTAC	2 cut(s)	784, 949
RsaNI	GTAC	2 cut(s)	783, 948
SapI	GCTCTTC	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	536, 1000
SatI	GCNGC	5 cut(s)	93, 365, 435, 438, 545
Sau3AI	GATC	2 cut(s)	133, 610
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	561
SfaNI	GCATC	3 cut(s)	134, 417, 611
SfcI	CTRYAG	4 cut(s)	177, 435, 542, 654
SfuI	TTCGAA	1 cut(s)	499
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
Sse9I	AATT	7 cut(s)	460, 530, 596, 678, 748, 810, 869
SsiI	CCGC	2 cut(s)	93, 580
SspMI	CTAG	1 cut(s)	441
StyI	CCWWGG	3 cut(s)	154, 631, 906
TaaI	ACNGT	2 cut(s)	267, 328
TaiI	ACGT	2 cut(s)	8, 771
TaqI	TCGA	3 cut(s)	499, 922, 977
TasI	AATT	7 cut(s)	460, 530, 596, 678, 748, 810, 869
TatI	WGTACW	1 cut(s)	947
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	4 cut(s)	233, 370, 712, 914
Tru1I	TTAA	2 cut(s)	536, 1000
Tru9I	TTAA	2 cut(s)	536, 1000
TscAI	CASTG	5 cut(s)	204, 243, 331, 350, 429
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	4 cut(s)	364, 434, 437, 544
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	4 cut(s)	456, 741, 836, 888
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	5 cut(s)	204, 243, 331, 350, 429
XapI	RAATTY	3 cut(s)	460, 530, 748
XceI	RCATGY	2 cut(s)	30, 210
XmiI	GTMKAC	1 cut(s)	687
XmnI	GAANNNNTTC	1 cut(s)	918
XspI	CTAG	1 cut(s)	441
Zsp2I	ATGCAT	2 cut(s)	149, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.