Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007152

Physical Location & Seq

Genomic Coordinates Forward (+)

31964770 .. 31968273

Gene Structure 3504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0198600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGGGAAATCATCTCTGCCTCCTGGTTTTCGGTTCAATCCTACTGATGTTGAACTGGTACAATATTATTTGAAGAGGAAGGTAATGGGAAAGAGACTCCATGTTAAAGTTATTGCTGAGGTGGACATTTACAAATGGGCTCCTTCGGATCTTCCAGACAAGTCTTGTTGGCGAAGTGGAGATTTGAAGTGGTACTTCTTTTGTCCTAGAGAGAAAAAATATGCAAGTGGAGCTAGAATGAATCGTGCCACTGACCGTGGTTACTGGAAAACCACAGGAAAGGATAGATCTGTTCTTTACAGTAATGAAGTTGTTGGTTGGATTAAAACATTAATTTTCCACACCGGTCGAGCTCCACGAGGACAGCGGACTGATTGGGTTTTACATGAGTATAGGCTTGAAGACAAGAAACTGGTTGATATGGGTGTGCCTCAGGATTCTTATGTGCTCTGTATGGTTTTCCAAAAGGATGGGATAGGACCAAGAAGCAATAAACAATATGGTGCGCCCTTCAAAGAGGAAGATTGGACTGATGATGAGGTTGAAACTGTTGTAGTTCCACATGTAAACATGTCTGAGCCAAACCTTGTTCATGCAAACATTCATCAGCCAGAGCCACATCTTATTCATTCAAACATGCCTGAGCCAGACCTTGTTCAAGCAAACATACCTGATCAAGTACCTGTTAATTCAAACATCACTGAGCCCGATCTTGTTTATGGAAACATGCCCGACCCATACCTTGTTTATCCAAACATGCCTGAATCAGACCTTGATTATGCAAATATGCCTCAATCAGACCTTGGTTATGCAAACATGTCTGAGCCATCCCTTGTCTTGCCCAGCAACTATAATAGCTCTATTGCTACTCGCACCAATTCCCGTGAGTCTTGTGTTTCTGATATCTTGCCACCTTCTAGCAATGTTCTGCAGTCTGTTTCCAGTAATTATGTTACAACAGAGAAACCTCATGTTTCAACTGATGATGATATCATGTCGATGCTTAATTGCTTTACAGAAGAAGGAACTTTCTCCATGAGTGACATTGACAAAAATGAGTGTCTGACTTTTTCATGGGTTTACAGCAGCTTGATAATCTCATTTATTCTGGAGACGCTAATCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

375

Amino Acids

42.74

Weight (kDa)

5.12

Isoelectric Point (pI)

55.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 133	6.8e-44	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31320
fragaria_vesca	FvH4_2g21980 FvH4_2g21980 FvH4_2g21980
malus_domestica	MD05G1201000.v1.1 MD10G1187800.v1.1
prunus_persica	Prupe.8G227600_v2.0.a1 Prupe.8G227600_v2.0.a1
pyrus_communis	pycom05g18780 pycom10g16230
rosa_chinensis	RchiOBHm_Chr6g0288861
rosa_laevigata	RLG00000012360
rosa_multiflora	Rmu_sc0005314.1_g000009
rosa_roxburghii	Rroxscaffold_7G00179830
rosa_rugosa	Rorug06G0198600 Rorug06G0198600 Rorug06G0198600 Rorug06G0198700 Rorug06G0198800 Rorug06G0198900 Rorug06G0198900
rosa_samantha	Rh6AG310000 Rh6BG315900 Rh6CG323400
rosa_wichuraiana	Rw6G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	367
AclWI	GGATC	1 cut(s)	156
AfaI	GTAC	3 cut(s)	60, 194, 681
AflIII	ACRYGT	3 cut(s)	562, 570, 816
AgeI	ACCGGT	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	4 cut(s)	233, 353, 858, 1089
AluI	AGCT	4 cut(s)	233, 353, 858, 1089
Alw21I	GWGCWC	2 cut(s)	355, 450
Alw26I	GTCTC	2 cut(s)	88, 1106
AlwI	GGATC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	1086
AseI	ATTAAT	1 cut(s)	332
AsiGI	ACCGGT	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	479
AxyI	CCTNAGG	1 cut(s)	432
BanII	GRGCYC	3 cut(s)	142, 355, 708
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	2 cut(s)	355, 450
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	1098
BccI	CCATC	2 cut(s)	464, 835
BciT130I	CCWGG	1 cut(s)	24
BclI	TGATCA	1 cut(s)	673
BcoDI	GTCTC	2 cut(s)	88, 1106
BfaI	CTAG	3 cut(s)	207, 234, 918
BfmI	CTRYAG	2 cut(s)	929, 1124
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	1 cut(s)	1087
BlsI	GCNGC	1 cut(s)	1088
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	990
BpiI	GAAGAC	1 cut(s)	408
Bpu10I	CCTNAGC	2 cut(s)	117, 642
BsaJI	CCNNGG	2 cut(s)	256, 802
BsaWI	WCCGGW	1 cut(s)	344
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	4 cut(s)	60, 269, 417, 942
Bse21I	CCTNAGG	1 cut(s)	432
Bse3DI	GCAATG	1 cut(s)	928
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	256, 802
BseGI	GGATG	2 cut(s)	475, 827
BseMI	GCAATG	1 cut(s)	928
BseMII	CTCAG	6 cut(s)	108, 446, 567, 633, 693, 813
BseNI	ACTGG	4 cut(s)	60, 269, 417, 942
BseXI	GCAGC	1 cut(s)	1098
BseYI	CCCAGC	1 cut(s)	842
Bsh1285I	CGRYCG	1 cut(s)	349
BshTI	ACCGGT	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	349
BsiHKAI	GWGCWC	2 cut(s)	355, 450
BsiSI	CCGG	1 cut(s)	345
BsmAI	GTCTC	2 cut(s)	88, 1106
BsmBI	CGTCTC	1 cut(s)	1106
Bsp1286I	GDGCHC	4 cut(s)	142, 355, 450, 708
Bsp143I	GATC	4 cut(s)	148, 287, 673, 709
BspACI	CCGC	1 cut(s)	367
BspCNI	CTCAG	6 cut(s)	109, 445, 568, 634, 694, 814
BspLI	GGNNCC	1 cut(s)	141
BspMAI	CTGCAG	1 cut(s)	933
BspPI	GGATC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	928
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	4 cut(s)	60, 269, 417, 942
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	256, 802
BssMI	GATC	4 cut(s)	148, 287, 673, 709
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	802
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	3 cut(s)	257, 302, 550
Bst6I	CTCTTC	1 cut(s)	68
BstDEI	CTNAG	6 cut(s)	117, 432, 576, 642, 702, 822
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	2 cut(s)	475, 827
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	4 cut(s)	151, 290, 676, 712
BstMAI	GTCTC	2 cut(s)	88, 1106
BstMBI	GATC	4 cut(s)	148, 287, 673, 709
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	6 cut(s)	566, 574, 640, 730, 760, 820
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	2 cut(s)	929, 1124
BstV1I	GCAGC	1 cut(s)	1098
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	2 cut(s)	148, 287
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	2 cut(s)	148, 287
Bsu36I	CCTNAGG	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	475, 827
BtsIMutI	CAGTG	2 cut(s)	249, 699
CfoI	GCGC	1 cut(s)	508
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	479
CseI	GACGC	1 cut(s)	1123
Csp6I	GTAC	3 cut(s)	59, 193, 680
CspAI	ACCGGT	1 cut(s)	344
CviQI	GTAC	3 cut(s)	59, 193, 680
DdeI	CTNAG	6 cut(s)	117, 432, 576, 642, 702, 822
DpnI	GATC	4 cut(s)	150, 289, 675, 711
DpnII	GATC	4 cut(s)	148, 287, 673, 709
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	802
Eco24I	GRGCYC	3 cut(s)	142, 355, 708
Eco32I	GATATC	2 cut(s)	904, 991
Eco47I	GGWCC	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	353
Eco81I	CCTNAGG	1 cut(s)	432
EcoICRI	GAGCTC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	22
EcoRV	GATATC	2 cut(s)	904, 991
EcoT14I	CCWWGG	1 cut(s)	802
EcoT38I	GRGCYC	3 cut(s)	142, 355, 708
ErhI	CCWWGG	1 cut(s)	802
Esp3I	CGTCTC	1 cut(s)	1106
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FbaI	TGATCA	1 cut(s)	673
Fnu4HI	GCNGC	1 cut(s)	1087
FokI	GGATG	2 cut(s)	482, 814
FriOI	GRGCYC	3 cut(s)	142, 355, 708
Fsp4HI	GCNGC	1 cut(s)	1087
FspBI	CTAG	3 cut(s)	207, 234, 918
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	1 cut(s)	1087
GsaI	CCCAGC	1 cut(s)	846
HapII	CCGG	1 cut(s)	345
HgaI	GACGC	1 cut(s)	1123
HhaI	GCGC	1 cut(s)	508
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HinfI	GANTC	5 cut(s)	96, 241, 437, 764, 887
HpaII	CCGG	1 cut(s)	345
Hpy166II	GTNNAC	3 cut(s)	124, 568, 1081
Hpy188I	TCNGA	7 cut(s)	148, 577, 769, 799, 823, 901, 1065
Hpy188III	TCNNGA	3 cut(s)	155, 434, 1109
Hpy8I	GTNNAC	3 cut(s)	124, 568, 1081
HpyAV	CCTTC	5 cut(s)	73, 153, 520, 924, 1016
HpyCH4III	ACNGT	3 cut(s)	257, 302, 550
HpyCH4V	TGCA	5 cut(s)	224, 596, 782, 812, 931
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	6 cut(s)	117, 432, 576, 642, 702, 822
HspAI	GCGC	1 cut(s)	506
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	4 cut(s)	148, 287, 673, 709
LmnI	GCTCC	3 cut(s)	145, 230, 358
Lsp1109I	GCAGC	1 cut(s)	1098
LweI	GCATC	1 cut(s)	990
MaeI	CTAG	3 cut(s)	207, 234, 918
MaeIII	GTNAC	3 cut(s)	260, 952, 1040
MalI	GATC	4 cut(s)	150, 289, 675, 711
MboI	GATC	4 cut(s)	148, 287, 673, 709
MboII	GAAGA	5 cut(s)	85, 143, 413, 533, 1031
MflI	RGATCY	2 cut(s)	148, 287
MhlI	GDGCHC	4 cut(s)	142, 355, 450, 708
MluCI	AATT	5 cut(s)	333, 688, 877, 946, 1006
MlyI	GAGTC	2 cut(s)	90, 896
MmeI	TCCRAC	1 cut(s)	299
MnlI	CCTC	9 cut(s)	30, 69, 112, 353, 441, 511, 532, 801, 978
MseI	TTAA	5 cut(s)	105, 324, 332, 687, 1005
MslI	CAYNNNNRTG	1 cut(s)	998
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	4 cut(s)	148, 287, 673, 709
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	1040
NspI	RCATGY	6 cut(s)	566, 574, 640, 730, 760, 820
PciI	ACATGT	3 cut(s)	562, 570, 816
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PfeI	GAWTC	3 cut(s)	241, 437, 764
PinAI	ACCGGT	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	1088
PleI	GAGTC	2 cut(s)	90, 895
PpsI	GAGTC	2 cut(s)	90, 895
PscI	ACATGT	3 cut(s)	562, 570, 816
PshBI	ATTAAT	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	842
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	479
PstI	CTGCAG	1 cut(s)	933
PsuI	RGATCY	2 cut(s)	148, 287
RsaI	GTAC	3 cut(s)	60, 194, 681
RsaNI	GTAC	3 cut(s)	59, 193, 680
RseI	CAYNNNNRTG	1 cut(s)	998
SacI	GAGCTC	1 cut(s)	355
SaqAI	TTAA	5 cut(s)	105, 324, 332, 687, 1005
SatI	GCNGC	1 cut(s)	1087
Sau3AI	GATC	4 cut(s)	148, 287, 673, 709
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	2 cut(s)	90, 896
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	4 cut(s)	142, 355, 450, 708
SfaNI	GCATC	1 cut(s)	990
SfcI	CTRYAG	2 cut(s)	929, 1124
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	998
Sse9I	AATT	5 cut(s)	333, 688, 877, 946, 1006
SsiI	CCGC	1 cut(s)	367
SspI	AATATT	1 cut(s)	65
SspMI	CTAG	3 cut(s)	207, 234, 918
SstI	GAGCTC	1 cut(s)	355
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	802
TaaI	ACNGT	3 cut(s)	257, 302, 550
TaqI	TCGA	2 cut(s)	349, 998
TasI	AATT	5 cut(s)	333, 688, 877, 946, 1006
TfiI	GAWTC	3 cut(s)	241, 437, 764
Tru1I	TTAA	5 cut(s)	105, 324, 332, 687, 1005
Tru9I	TTAA	5 cut(s)	105, 324, 332, 687, 1005
TscAI	CASTG	2 cut(s)	256, 706
TseFI	GTSAC	1 cut(s)	1040
TseI	GCWGC	1 cut(s)	1086
Tsp45I	GTSAC	1 cut(s)	1040
TspDTI	ATGAA	6 cut(s)	254, 321, 581, 593, 617, 1062
TspRI	CASTG	2 cut(s)	256, 706
VpaK11BI	GGWCC	1 cut(s)	479
VspI	ATTAAT	1 cut(s)	332
XceI	RCATGY	6 cut(s)	566, 574, 640, 730, 760, 820
XspI	CTAG	3 cut(s)	207, 234, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.