Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0014835

Physical Location & Seq

Genomic Coordinates Forward (+)

26688953 .. 26689802

Gene Structure 850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g25230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGATCTTTTTTTTTGGTGATCTTAATCACCTCATCTCTGCTACCATGAGCGGTGTCACATGTTGTCTTCGGTTCCCTGGACAGTTGAACTCTGACCTACGCAAGCTTGCTGTTAACCTTATCTCTTTCCCACGGCTGCACTTCTTTATGGTTGGGTTTGCACCCCTAACTTCAAGAGGATCACAGCAGTACCGTTCTCTGTCTGTGCCCGAATTGACCCAGCAGATGTGGGATGCCAAAAACATGATGTGTGCTGCTGATCCACGCCATGGACGTTACCTTACTGCGTCTGCTGTGTTCCGTGGTAAGATGAGCACCAAAGAAGTTGATGAACAGATGATTAATGTCCAGAACAAGAACTCCTCATACTTTGTCGAGTGGATTCCCAATAATGTTAAGTCCAGCGTGTGTGACATCCCACCCAAGGGTCTGCAAATGGCATCCACTTTCATTGGGAATTCGACTTCAATTCAGGAAATGTTCAGGAGAGTTAGCGAGCAGTTCACAGCTATGTTCAGGCGAAAGGCTTTCTTGCATTGGTACACGGGAGAGGGAATGGATGAGATGGAGTTCACCGAGGCTGAGAGTAACATGAATGATCTGGTTGCCGAGTACCAGCAATACCAGGATGCAACTATCGAAGTGGAGGAGTACGAAGAGGAGGAAGAGGAGGTTGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005198 GO:0005200 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006996 GO:0007010 GO:0008150 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016043 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045298 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04145 ko04540 ko05130 map04145 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

228

Amino Acids

26.05

Weight (kDa)

4.93

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin_C	PF03953	44 - 165	9e-41	Tubulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014835)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g25230 pycom07g24800 pycom10g20570
rosa_multiflora	Rmu_ssc0000354.1_g000001
rosa_roxburghii	Rroxscaffold_1G00013720
rosa_samantha	Rh3BG132000 Rh3CG134200 Rh5AG129900 Rh5BG460900 Rh5CG140500 Rh5CG483200 Rh5DG130100 Rh5DG475900 Rh7AG016100 Rh7AG167500 Rh7BG170300 Rh7DG169400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	269
AccBSI	CCGCTC	1 cut(s)	51
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	2 cut(s)	187, 254
AcsI	RAATTY	1 cut(s)	457
AfaI	GTAC	4 cut(s)	191, 542, 614, 653
AfiI	CCNNNNNNNGG	3 cut(s)	269, 424, 425
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	88, 174, 468
AjnI	CCWGG	2 cut(s)	76, 624
AjuI	GAANNNNNNNTTGG	1 cut(s)	657
AloI	GAACNNNNNNTCC	2 cut(s)	344, 376
AluBI	AGCT	2 cut(s)	106, 509
AluI	AGCT	2 cut(s)	106, 509
Alw21I	GWGCWC	1 cut(s)	317
AlwI	GGATC	2 cut(s)	187, 254
ApeKI	GCWGC	2 cut(s)	136, 254
ApoI	RAATTY	1 cut(s)	457
AseI	ATTAAT	1 cut(s)	342
AsuHPI	GGTGA	3 cut(s)	20, 29, 565
BaeGI	GKGCMC	1 cut(s)	210
BaeI	ACNNNNGTAYC	2 cut(s)	173, 206
BbsI	GAAGAC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	123, 241
BccI	CCATC	1 cut(s)	559
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	2 cut(s)	78, 626
BisI	GCNGC	2 cut(s)	137, 255
BlsI	GCNGC	2 cut(s)	138, 256
Bme1390I	CCNGG	2 cut(s)	78, 626
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	2 cut(s)	78, 626
BmsI	GCATC	3 cut(s)	223, 449, 619
BpiI	GAAGAC	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	24
BsaJI	CCNNGG	6 cut(s)	76, 131, 268, 301, 423, 576
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	3 cut(s)	269, 424, 425
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	78, 626
BseDI	CCNNGG	6 cut(s)	76, 131, 268, 301, 423, 576
BseGI	GGATG	5 cut(s)	238, 414, 440, 565, 634
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	3 cut(s)	269, 424, 425
BseMII	CTCAG	1 cut(s)	573
BseRI	GAGGAG	4 cut(s)	352, 662, 674, 683
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	2 cut(s)	123, 241
BseYI	CCCAGC	1 cut(s)	219
BsgI	GTGCAG	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	317
BslI	CCNNNNNNNGG	3 cut(s)	269, 424, 425
Bsp1286I	GDGCHC	2 cut(s)	210, 317
Bsp143I	GATC	5 cut(s)	3, 19, 179, 259, 598
Bsp19I	CCATGG	1 cut(s)	268
BspACI	CCGC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	574
BspLI	GGNNCC	1 cut(s)	74
BspPI	GGATC	2 cut(s)	187, 254
BsrBI	CCGCTC	1 cut(s)	51
BssECI	CCNNGG	6 cut(s)	76, 131, 268, 301, 423, 576
BssMI	GATC	5 cut(s)	3, 19, 179, 259, 598
BssT1I	CCWWGG	2 cut(s)	268, 423
Bst2UI	CCWGG	2 cut(s)	78, 626
Bst4CI	ACNGT	2 cut(s)	84, 194
Bst6I	CTCTTC	2 cut(s)	651, 660
BstC8I	GCNNGC	3 cut(s)	104, 108, 497
BstDEI	CTNAG	1 cut(s)	582
BstDSI	CCRYGG	3 cut(s)	131, 268, 301
BstF5I	GGATG	5 cut(s)	238, 414, 440, 565, 634
BstKTI	GATC	5 cut(s)	6, 22, 182, 262, 601
BstMBI	GATC	5 cut(s)	3, 19, 179, 259, 598
BstNI	CCWGG	2 cut(s)	78, 626
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	2 cut(s)	76, 624
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	123, 241
BstV2I	GAAGAC	1 cut(s)	59
BtgI	CCRYGG	3 cut(s)	131, 268, 301
BtsCI	GGATG	5 cut(s)	238, 414, 440, 565, 634
Cac8I	GCNNGC	3 cut(s)	104, 108, 497
CseI	GACGC	1 cut(s)	276
Csp6I	GTAC	4 cut(s)	190, 541, 613, 652
CspCI	CAANNNNNGTGG	2 cut(s)	433, 468
CviAII	CATG	5 cut(s)	46, 60, 244, 269, 592
CviJI	RGCY	5 cut(s)	106, 136, 509, 527, 581
CviKI_1	RGCY	5 cut(s)	106, 136, 509, 527, 581
CviQI	GTAC	4 cut(s)	190, 541, 613, 652
DdeI	CTNAG	1 cut(s)	582
DpnI	GATC	5 cut(s)	5, 21, 181, 261, 600
DpnII	GATC	5 cut(s)	3, 19, 179, 259, 598
Eam1104I	CTCTTC	2 cut(s)	651, 660
EarI	CTCTTC	2 cut(s)	651, 660
Eco130I	CCWWGG	2 cut(s)	268, 423
EcoRI	GAATTC	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	76, 624
EcoT14I	CCWWGG	2 cut(s)	268, 423
ErhI	CCWWGG	2 cut(s)	268, 423
FaeI	CATG	5 cut(s)	49, 63, 247, 272, 595
FaiI	YATR	8 cut(s)	47, 61, 149, 245, 270, 367, 512, 593
FalI	AAGNNNNNCTT	2 cut(s)	515, 547
FatI	CATG	5 cut(s)	45, 59, 243, 268, 591
Fnu4HI	GCNGC	2 cut(s)	137, 255
FokI	GGATG	5 cut(s)	245, 401, 427, 572, 641
Fsp4HI	GCNGC	2 cut(s)	137, 255
GluI	GCNGC	2 cut(s)	137, 255
GsaI	CCCAGC	1 cut(s)	223
HgaI	GACGC	1 cut(s)	276
Hin1II	CATG	5 cut(s)	49, 63, 247, 272, 595
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	1 cut(s)	382
HpaI	GTTAAC	1 cut(s)	115
HphI	GGTGA	3 cut(s)	20, 29, 565
Hpy166II	GTNNAC	4 cut(s)	115, 504, 543, 573
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	4 cut(s)	174, 349, 473, 484
Hpy8I	GTNNAC	4 cut(s)	115, 504, 543, 573
HpyCH4III	ACNGT	2 cut(s)	84, 194
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	5 cut(s)	139, 161, 433, 535, 632
HpyF3I	CTNAG	1 cut(s)	582
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	5 cut(s)	49, 63, 247, 272, 595
KspAI	GTTAAC	1 cut(s)	115
Kzo9I	GATC	5 cut(s)	3, 19, 179, 259, 598
Lsp1109I	GCAGC	2 cut(s)	123, 241
LweI	GCATC	3 cut(s)	223, 449, 619
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	4 cut(s)	55, 275, 410, 587
MalI	GATC	5 cut(s)	5, 21, 181, 261, 600
MbiI	CCGCTC	1 cut(s)	51
MboI	GATC	5 cut(s)	3, 19, 179, 259, 598
MboII	GAAGA	3 cut(s)	59, 668, 677
MhlI	GDGCHC	2 cut(s)	210, 317
MluCI	AATT	3 cut(s)	212, 457, 468
MseI	TTAA	4 cut(s)	24, 114, 342, 396
MslI	CAYNNNNRTG	1 cut(s)	509
MspR9I	CCNGG	2 cut(s)	78, 626
MvaI	CCWGG	2 cut(s)	78, 626
NcoI	CCATGG	1 cut(s)	268
NdeII	GATC	5 cut(s)	3, 19, 179, 259, 598
NlaIII	CATG	5 cut(s)	49, 63, 247, 272, 595
NlaIV	GGNNCC	1 cut(s)	74
NmeAIII	GCCGAG	1 cut(s)	634
NmuCI	GTSAC	2 cut(s)	55, 410
NspI	RCATGY	1 cut(s)	63
PciI	ACATGT	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	138, 256
PscI	ACATGT	1 cut(s)	59
PshBI	ATTAAT	1 cut(s)	342
Psp6I	CCWGG	2 cut(s)	76, 624
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	2 cut(s)	76, 624
PspN4I	GGNNCC	1 cut(s)	74
PsrI	GAACNNNNNNTAC	2 cut(s)	350, 382
RsaI	GTAC	4 cut(s)	191, 542, 614, 653
RsaNI	GTAC	4 cut(s)	190, 541, 613, 652
RseI	CAYNNNNRTG	1 cut(s)	509
SaqAI	TTAA	4 cut(s)	24, 114, 342, 396
SatI	GCNGC	2 cut(s)	137, 255
Sau3AI	GATC	5 cut(s)	3, 19, 179, 259, 598
ScrFI	CCNGG	2 cut(s)	78, 626
SduI	GDGCHC	2 cut(s)	210, 317
SetI	ASST	8 cut(s)	33, 99, 108, 120, 277, 282, 511, 675
SfaNI	GCATC	3 cut(s)	223, 449, 619
SmiMI	CAYNNNNRTG	1 cut(s)	509
Sse9I	AATT	3 cut(s)	212, 457, 468
SsiI	CCGC	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	76, 624
StyI	CCWWGG	2 cut(s)	268, 423
TaaI	ACNGT	2 cut(s)	84, 194
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	3 cut(s)	375, 461, 639
TasI	AATT	3 cut(s)	212, 457, 468
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	4 cut(s)	24, 114, 342, 396
Tru9I	TTAA	4 cut(s)	24, 114, 342, 396
TseFI	GTSAC	2 cut(s)	55, 410
TseI	GCWGC	2 cut(s)	136, 254
Tsp45I	GTSAC	2 cut(s)	55, 410
TspDTI	ATGAA	3 cut(s)	345, 439, 608
TspGWI	ACGGA	1 cut(s)	290
Van91I	CCANNNNNTGG	1 cut(s)	269
VspI	ATTAAT	1 cut(s)	342
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.