Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0014835

Physical Location & Seq

Genomic Coordinates Forward (+)

25352054 .. 25353786

Gene Structure 1733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGGAACTCTTCTCATTTCCAAGATCCGAGAGGAGTATCCGGACCGAATGATGCTCACATTCTCCGTGTTTCCGTCGCCAAAGGTGTCTGACACCGTCGTTGAGCCATACAATGCAACTCTCTCTGTTCACCAGCTTGTTGAAAATGCAGATGAGTGTATGGTTTTGGACAACGAAGCTCTCTACGACATTTGCTTCCGGACACTGAAGCTCACTACTCCCAGCTTTGGCGACCTCAATCATCTTATTTCTGCTACCATGAGCGGCGTAACTTGCTGCCTTCGTTTCCCTGGTCAACTCAACTCAGATCTTCGCAAGCTTGCTGTTAATCTCATCCCATTCCCCCGACTGCACTTCTTCATGGTTGGGTTTGCTCCACTCACATCCCGCGGATCACAGCAGTACAGGGCCCTTACTGTTCCAGAGCTCACTCAACAGATGTGGGATGCAAAGAACATGATGTGCGCCGCTGATCCACGTCATGGACGGTATTTGACTGCTTCAGCCATGTTCCGTGGCAAGATGAGCACCAAGGAAGTTGACGAACAGATGATCAATGTGCAAAACAAGAACTCATCCTACTTTGTTGAGTGGATCCCAAACAATGTCAAGTCCACTGTTTGTGATATTCCACCAACCGGTCTGAAGATGGCCTCGACCTTCATTGGCAACTCCACCTCCATTCAGGAAATGTTCAGGAGGGTGAGTGAGCAGTTCACTGCTATGTTCCGAAGAAAGGCTTTCTTGCATTGGTACACCGGAGAGGGAATGGATGAGATGGAGTTCACCGAGGCAGAGAGCAACATGAACGACCTCGTTTCAGAGTACCAGCAGTACCAGGATGCTACAGCCGATGAGGAGGGGTACGACTATGAAGAAGAGGAGGAAGTTCAGGAGGAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005856 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045298 GO:0050896 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04145 ko04540 ko05130 map04145 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

302

Amino Acids

34.45

Weight (kDa)

4.72

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014835)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g25230 pycom07g24800 pycom10g20570
rosa_multiflora	Rmu_ssc0000354.1_g000001
rosa_roxburghii	Rroxscaffold_1G00013720
rosa_samantha	Rh3BG132000 Rh3CG134200 Rh5AG129900 Rh5BG460900 Rh5CG140500 Rh5CG483200 Rh5DG130100 Rh5DG475900 Rh7AG016100 Rh7AG167500 Rh7BG170300 Rh7DG169400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	482
AccBSI	CCGCTC	1 cut(s)	264
AccII	CGCG	1 cut(s)	390
AccIII	TCCGGA	2 cut(s)	40, 198
AciI	CCGC	4 cut(s)	264, 388, 390, 468
AclWI	GGATC	5 cut(s)	19, 400, 467, 589, 602
AcuI	CTGAAG	3 cut(s)	227, 486, 665
AfaI	GTAC	5 cut(s)	404, 755, 827, 836, 866
AfiI	CCNNNNNNNGG	4 cut(s)	227, 482, 638, 736
AgeI	ACCGGT	1 cut(s)	638
AgsI	TTSAA	1 cut(s)	143
AjiI	CACGTC	1 cut(s)	479
AjnI	CCWGG	2 cut(s)	289, 837
AluBI	AGCT	6 cut(s)	136, 179, 211, 225, 319, 427
AluI	AGCT	6 cut(s)	136, 179, 211, 225, 319, 427
Alw21I	GWGCWC	2 cut(s)	429, 530
AlwI	GGATC	5 cut(s)	19, 400, 467, 589, 602
Aor13HI	TCCGGA	2 cut(s)	40, 198
AoxI	GGCC	2 cut(s)	408, 651
ApaI	GGGCCC	1 cut(s)	412
ApeKI	GCWGC	1 cut(s)	276
AsiGI	ACCGGT	1 cut(s)	638
AspLEI	GCGC	1 cut(s)	467
AspS9I	GGNCC	3 cut(s)	43, 408, 409
AsuHPI	GGTGA	3 cut(s)	122, 715, 778
AvaII	GGWCC	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	412
BamHI	GGATCC	1 cut(s)	594
BanII	GRGCYC	2 cut(s)	412, 429
Bbv12I	GWGCWC	2 cut(s)	429, 530
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	2 cut(s)	643, 772
BciT130I	CCWGG	2 cut(s)	291, 839
BciVI	GTATCC	1 cut(s)	48
BclI	TGATCA	1 cut(s)	552
BfmI	CTRYAG	1 cut(s)	846
BfuI	GTATCC	1 cut(s)	48
BglII	AGATCT	1 cut(s)	307
BisI	GCNGC	3 cut(s)	265, 277, 468
BlsI	GCNGC	3 cut(s)	266, 278, 469
Bme1390I	CCNGG	2 cut(s)	291, 839
Bme18I	GGWCC	1 cut(s)	43
BmgBI	CACGTC	1 cut(s)	479
BmgT120I	GGNCC	3 cut(s)	43, 408, 409
BmiI	GGNNCC	2 cut(s)	410, 596
BmrFI	CCNGG	2 cut(s)	291, 839
BmsI	GCATC	3 cut(s)	42, 436, 832
BsaJI	CCNNGG	5 cut(s)	289, 388, 514, 531, 789
BsaWI	WCCGGW	4 cut(s)	40, 198, 638, 758
BsaXI	ACNNNNNCTCC	4 cut(s)	662, 691, 692, 721
Bsc4I	CCNNNNNNNGG	4 cut(s)	227, 482, 638, 736
Bse118I	RCCGGY	1 cut(s)	638
BseAI	TCCGGA	2 cut(s)	40, 198
BseBI	CCWGG	2 cut(s)	291, 839
BseDI	CCNNGG	5 cut(s)	289, 388, 514, 531, 789
BseGI	GGATG	6 cut(s)	333, 383, 451, 575, 778, 847
BseLI	CCNNNNNNNGG	4 cut(s)	227, 482, 638, 736
BseMII	CTCAG	1 cut(s)	318
BseRI	GAGGAG	3 cut(s)	47, 872, 896
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	263
BseYI	CCCAGC	1 cut(s)	221
BsgI	GTGCAG	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	2 cut(s)	410, 653
BshTI	ACCGGT	1 cut(s)	638
BsiHKAI	GWGCWC	2 cut(s)	429, 530
BsiSI	CCGG	4 cut(s)	41, 199, 639, 759
BslI	CCNNNNNNNGG	4 cut(s)	227, 482, 638, 736
BsnI	GGCC	2 cut(s)	410, 653
Bsp120I	GGGCCC	1 cut(s)	408
Bsp1286I	GDGCHC	3 cut(s)	412, 429, 530
Bsp13I	TCCGGA	2 cut(s)	40, 198
Bsp143I	GATC	6 cut(s)	24, 307, 392, 472, 552, 594
BspACI	CCGC	4 cut(s)	264, 388, 390, 468
BspANI	GGCC	2 cut(s)	410, 653
BspCNI	CTCAG	1 cut(s)	317
BspEI	TCCGGA	2 cut(s)	40, 198
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	2 cut(s)	410, 596
BspPI	GGATC	5 cut(s)	19, 400, 467, 589, 602
BsrBI	CCGCTC	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	638
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	5 cut(s)	289, 388, 514, 531, 789
BssMI	GATC	6 cut(s)	24, 307, 392, 472, 552, 594
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	2 cut(s)	291, 839
Bst4CI	ACNGT	4 cut(s)	97, 418, 489, 619
Bst6I	CTCTTC	2 cut(s)	15, 873
BstC8I	GCNNGC	2 cut(s)	317, 321
BstDEI	CTNAG	1 cut(s)	304
BstDSI	CCRYGG	2 cut(s)	388, 514
BstF5I	GGATG	6 cut(s)	333, 383, 451, 575, 778, 847
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	6 cut(s)	27, 310, 395, 475, 555, 597
BstMBI	GATC	6 cut(s)	24, 307, 392, 472, 552, 594
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 525
BstNI	CCWGG	2 cut(s)	291, 839
BstSCI	CCNGG	2 cut(s)	289, 837
BstSFI	CTRYAG	1 cut(s)	846
BstSLI	GKGCMC	1 cut(s)	412
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	263
BstX2I	RGATCY	3 cut(s)	24, 307, 594
BstYI	RGATCY	3 cut(s)	24, 307, 594
BsuI	GTATCC	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	410, 653
BtgI	CCRYGG	2 cut(s)	388, 514
BtrI	CACGTC	1 cut(s)	479
BtsCI	GGATG	6 cut(s)	333, 383, 451, 575, 778, 847
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	3 cut(s)	203, 615, 717
Cac8I	GCNNGC	2 cut(s)	317, 321
CfoI	GCGC	1 cut(s)	467
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	3 cut(s)	43, 408, 409
Cfr42I	CCGCGG	1 cut(s)	391
CpoI	CGGWCCG	1 cut(s)	43
Csp6I	GTAC	5 cut(s)	403, 754, 826, 835, 865
CspAI	ACCGGT	1 cut(s)	638
CspCI	CAANNNNNGTGG	2 cut(s)	422, 457
CspI	CGGWCCG	1 cut(s)	43
CviAII	CATG	6 cut(s)	259, 361, 457, 482, 508, 805
CviQI	GTAC	5 cut(s)	403, 754, 826, 835, 865
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	6 cut(s)	26, 309, 394, 474, 554, 596
DpnII	GATC	6 cut(s)	24, 307, 392, 472, 552, 594
Eam1104I	CTCTTC	2 cut(s)	15, 873
EarI	CTCTTC	2 cut(s)	15, 873
Ecl136II	GAGCTC	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	2 cut(s)	412, 429
Eco47I	GGWCC	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	427
Eco57I	CTGAAG	3 cut(s)	227, 486, 665
EcoICRI	GAGCTC	1 cut(s)	427
EcoO109I	RGGNCCY	2 cut(s)	408, 409
EcoRII	CCWGG	2 cut(s)	289, 837
EcoT14I	CCWWGG	1 cut(s)	531
EcoT38I	GRGCYC	2 cut(s)	412, 429
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	6 cut(s)	262, 364, 460, 485, 511, 808
FalI	AAGNNNNNCTT	4 cut(s)	724, 756, 728, 760
FatI	CATG	6 cut(s)	258, 360, 456, 481, 507, 804
FauI	CCCGC	1 cut(s)	395
FbaI	TGATCA	1 cut(s)	552
Fnu4HI	GCNGC	3 cut(s)	265, 277, 468
FokI	GGATG	6 cut(s)	320, 370, 458, 562, 785, 854
FriOI	GRGCYC	2 cut(s)	412, 429
Fsp4HI	GCNGC	3 cut(s)	265, 277, 468
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	3 cut(s)	265, 277, 468
GsaI	CCCAGC	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	410, 653
HapII	CCGG	4 cut(s)	41, 199, 639, 759
HhaI	GCGC	1 cut(s)	467
Hin1II	CATG	6 cut(s)	262, 364, 460, 485, 511, 808
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HincII	GTYRAC	2 cut(s)	296, 541
HindII	GTYRAC	2 cut(s)	296, 541
HindIII	AAGCTT	1 cut(s)	317
HpaII	CCGG	4 cut(s)	41, 199, 639, 759
HphI	GGTGA	3 cut(s)	122, 715, 778
Hpy166II	GTNNAC	7 cut(s)	130, 296, 541, 615, 717, 756, 786
Hpy188I	TCNGA	6 cut(s)	29, 91, 307, 645, 731, 823
Hpy188III	TCNNGA	6 cut(s)	41, 199, 422, 686, 697, 893
Hpy8I	GTNNAC	7 cut(s)	130, 296, 541, 615, 717, 756, 786
Hpy99I	CGWCG	2 cut(s)	79, 101
HpyAV	CCTTC	2 cut(s)	290, 670
HpyCH4III	ACNGT	4 cut(s)	97, 418, 489, 619
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	6 cut(s)	116, 149, 352, 449, 562, 748
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 525
HpyF3I	CTNAG	1 cut(s)	304
HpySE526I	ACGT	1 cut(s)	478
Hsp92II	CATG	6 cut(s)	262, 364, 460, 485, 511, 808
HspAI	GCGC	1 cut(s)	465
Kpn2I	TCCGGA	2 cut(s)	40, 198
Ksp22I	TGATCA	1 cut(s)	552
KspI	CCGCGG	1 cut(s)	391
Kzo9I	GATC	6 cut(s)	24, 307, 392, 472, 552, 594
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	3 cut(s)	42, 436, 832
MaeII	ACGT	1 cut(s)	478
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	6 cut(s)	26, 309, 394, 474, 554, 596
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	6 cut(s)	24, 307, 392, 472, 552, 594
MboII	GAAGA	6 cut(s)	302, 349, 658, 744, 887, 890
MflI	RGATCY	3 cut(s)	24, 307, 594
MhlI	GDGCHC	3 cut(s)	412, 429, 530
MroI	TCCGGA	2 cut(s)	40, 198
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	722
MspA1I	CMGCKG	2 cut(s)	390, 470
MspI	CCGG	4 cut(s)	41, 199, 639, 759
MspR9I	CCNGG	2 cut(s)	291, 839
MvaI	CCWGG	2 cut(s)	291, 839
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	273, 525
NdeII	GATC	6 cut(s)	24, 307, 392, 472, 552, 594
NlaIII	CATG	6 cut(s)	262, 364, 460, 485, 511, 808
NlaIV	GGNNCC	2 cut(s)	410, 596
PflFI	GACNNNGTC	1 cut(s)	95
PflMI	CCANNNNNTGG	1 cut(s)	482
PinAI	ACCGGT	1 cut(s)	638
PkrI	GCNGC	3 cut(s)	266, 278, 469
Psp124BI	GAGCTC	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	289, 837
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	2 cut(s)	289, 837
PspN4I	GGNNCC	2 cut(s)	410, 596
PspOMI	GGGCCC	1 cut(s)	408
PspPI	GGNCC	3 cut(s)	43, 408, 409
PsrI	GAACNNNNNNTAC	2 cut(s)	563, 595
PsuI	RGATCY	3 cut(s)	24, 307, 594
PsyI	GACNNNGTC	1 cut(s)	95
RsaI	GTAC	5 cut(s)	404, 755, 827, 836, 866
RsaNI	GTAC	5 cut(s)	403, 754, 826, 835, 865
RseI	CAYNNNNRTG	1 cut(s)	722
Rsr2I	CGGWCCG	1 cut(s)	43
RsrII	CGGWCCG	1 cut(s)	43
SacI	GAGCTC	1 cut(s)	429
SacII	CCGCGG	1 cut(s)	391
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	3 cut(s)	265, 277, 468
Sau3AI	GATC	6 cut(s)	24, 307, 392, 472, 552, 594
Sau96I	GGNCC	3 cut(s)	43, 408, 409
ScrFI	CCNGG	2 cut(s)	291, 839
SduI	GDGCHC	3 cut(s)	412, 429, 530
SfaNI	GCATC	3 cut(s)	42, 436, 832
SfcI	CTRYAG	1 cut(s)	846
Sfr303I	CCGCGG	1 cut(s)	391
SgrBI	CCGCGG	1 cut(s)	391
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	722
SsiI	CCGC	4 cut(s)	264, 388, 390, 468
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	2 cut(s)	289, 837
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	4 cut(s)	97, 418, 489, 619
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	1 cut(s)	656
TaqII	GACCGA	1 cut(s)	60
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	2 cut(s)	267, 470
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	3 cut(s)	210, 622, 724
TseI	GCWGC	1 cut(s)	276
TspDTI	ATGAA	4 cut(s)	349, 652, 821, 888
TspGWI	ACGGA	3 cut(s)	55, 63, 503
TspRI	CASTG	3 cut(s)	210, 622, 724
Tth111I	GACNNNGTC	1 cut(s)	95
Van91I	CCANNNNNTGG	1 cut(s)	482
VpaK11BI	GGWCC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.