Rh5AG129900

Tubulin/FtsZ family, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0014835
Physical Location & Seq
Reverse (-)
12881091 .. 12883665
2575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG129900.1

Sequence Viewer

Length: 711 bp
ATGCTCATGATACATATTTTTTGCATTTTTATTGTAGTTGGTGATCTTAACCACCTAATCTCTGCCACAATGAGTGGTGTCACATGCTGTCTTCGGTTCCCTGGACAGCTGAACTCTGACCTTCGAAAGCTTGCAGTCAACCTCATTCCTTTTCCGCGTCTCCATTTCTTTATGGTTGGGTTTGCACCCCTGACCTCAAGAGGATCACAGCAGTACCGTTCTCTGACCGTGCCCGAGTTAACCCAGCAGATGTGGGATGCCAAAAACATGATGTGTGCTGCTGATCCACGCCATGGACGGTACCTTACTGCTTCTGCCATGTTCCGTGGTAAAATGAGCACTAAAGAAGTTGATGAACAGATGATTAACGTCCAGAACAAGAACTCCTCATACTTTGTTGAGTGGATTCCAAATAATGTCAAGTCCAGTGTGTGTGACATCCCCCCAAAGGGTTTGGCAATGGCTTCCACTTTCATTGGGAACTCAACCTCCATCCAGGAAATGTTCAGGAGGGTTAGTGAGCAATTCACAGCTATGTTCAGGCGAAAGGCTTTCTTACATTGGTACACTGGGGAGGGAATGGATGAGATGGAGTTCACCGAGGCTGAGAGTAACATGAATGATCTGGTGGCTGAGTACCAGCAATACCAGGATGCAACTGCTGAGTATGAGGAGGAGTATGAGGAGGAGGAAGAGGAGGTTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04145 ko04540 ko05130 map04145 map04540 map05130
Pfam Domains
Protein Families
Tubulin Tubulin_C

Protein Analysis

236

Amino Acids

27.09

Weight (kDa)

4.94

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin_C PF03953 52 - 173 1.2e-40 Tubulin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 300
AccB7I CCANNNNNTGG 1 cut(s) 293
AccII CGCG 1 cut(s) 157
AciI CCGC 1 cut(s) 155
AclWI GGATC 2 cut(s) 211, 278
AfaI GTAC 4 cut(s) 215, 302, 566, 638
AfiI CCNNNNNNNGG 3 cut(s) 293, 448, 449
AjnI CCWGG 3 cut(s) 100, 495, 648
AloI GAACNNNNNNTCC 4 cut(s) 368, 400, 473, 505
AluBI AGCT 3 cut(s) 109, 130, 533
AluI AGCT 3 cut(s) 109, 130, 533
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 2 cut(s) 211, 278
Ama87I CYCGRG 1 cut(s) 233
ApeKI GCWGC 2 cut(s) 278, 704
Asp718I GGTACC 1 cut(s) 300
AsuHPI GGTGA 2 cut(s) 53, 589
AsuII TTCGAA 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 234
BaeI ACNNNNGTAYC 2 cut(s) 197, 230
BanI GGYRCC 1 cut(s) 300
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 2 cut(s) 265, 691
BccI CCATC 2 cut(s) 500, 583
BciT130I CCWGG 3 cut(s) 102, 497, 650
BcoDI GTCTC 1 cut(s) 164
BisI GCNGC 2 cut(s) 279, 705
BlsI GCNGC 2 cut(s) 280, 706
Bme1390I CCNGG 3 cut(s) 102, 497, 650
BmeT110I CYCGRG 1 cut(s) 233
BmiI GGNNCC 2 cut(s) 98, 302
BmrFI CCNGG 3 cut(s) 102, 497, 650
BmrI ACTGGG 1 cut(s) 579
BmsI GCATC 2 cut(s) 247, 643
BmuI ACTGGG 1 cut(s) 579
BpiI GAAGAC 1 cut(s) 83
Bpu14I TTCGAA 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 181
BsaJI CCNNGG 4 cut(s) 100, 292, 325, 600
BsaXI ACNNNNNCTCC 6 cut(s) 368, 398, 473, 502, 503, 532
Bsc4I CCNNNNNNNGG 3 cut(s) 293, 448, 449
Bse1I ACTGG 2 cut(s) 426, 574
Bse3DI GCAATG 1 cut(s) 465
BseBI CCWGG 3 cut(s) 102, 497, 650
BseDI CCNNGG 4 cut(s) 100, 292, 325, 600
BseGI GGATG 5 cut(s) 262, 438, 492, 589, 658
BseLI CCNNNNNNNGG 3 cut(s) 293, 448, 449
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 3 cut(s) 597, 624, 654
BseNI ACTGG 2 cut(s) 426, 574
BseRI GAGGAG 6 cut(s) 376, 686, 689, 698, 701, 710
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 2 cut(s) 265, 691
BseYI CCCAGC 1 cut(s) 243
Bsh1236I CGCG 1 cut(s) 157
BshNI GGYRCC 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 341
BsiHKCI CYCGRG 1 cut(s) 233
BslI CCNNNNNNNGG 3 cut(s) 293, 448, 449
BsmAI GTCTC 1 cut(s) 164
BsmBI CGTCTC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 233
Bsp119I TTCGAA 1 cut(s) 124
Bsp1286I GDGCHC 2 cut(s) 234, 341
Bsp143I GATC 4 cut(s) 43, 203, 283, 622
Bsp19I CCATGG 1 cut(s) 292
BspACI CCGC 1 cut(s) 155
BspCNI CTCAG 3 cut(s) 598, 625, 655
BspFNI CGCG 1 cut(s) 157
BspHI TCATGA 1 cut(s) 6
BspLI GGNNCC 2 cut(s) 98, 302
BspPI GGATC 2 cut(s) 211, 278
BspT104I TTCGAA 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 465
BsrI ACTGG 2 cut(s) 426, 574
BssECI CCNNGG 4 cut(s) 100, 292, 325, 600
BssMI GATC 4 cut(s) 43, 203, 283, 622
BssT1I CCWWGG 1 cut(s) 292
Bst2UI CCWGG 3 cut(s) 102, 497, 650
Bst4CI ACNGT 3 cut(s) 218, 229, 300
Bst6I CTCTTC 1 cut(s) 687
BstBI TTCGAA 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 3 cut(s) 606, 633, 663
BstDSI CCRYGG 2 cut(s) 292, 325
BstF5I GGATG 5 cut(s) 262, 438, 492, 589, 658
BstFNI CGCG 1 cut(s) 157
BstKTI GATC 4 cut(s) 46, 206, 286, 625
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 4 cut(s) 43, 203, 283, 622
BstNI CCWGG 3 cut(s) 102, 497, 650
BstNSI RCATGY 1 cut(s) 87
BstSCI CCNGG 3 cut(s) 100, 495, 648
BstSLI GKGCMC 1 cut(s) 234
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 265, 691
BstV2I GAAGAC 1 cut(s) 83
BtgI CCRYGG 2 cut(s) 292, 325
BtsCI GGATG 5 cut(s) 262, 438, 492, 589, 658
BtsIMutI CAGTG 2 cut(s) 433, 567
Cac8I GCNNGC 1 cut(s) 132
CciI TCATGA 1 cut(s) 6
CseI GACGC 1 cut(s) 146
Csp6I GTAC 4 cut(s) 214, 301, 565, 637
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviAII CATG 6 cut(s) 7, 84, 268, 293, 319, 616
CviJI RGCY 7 cut(s) 109, 130, 464, 533, 551, 605, 632
CviKI_1 RGCY 7 cut(s) 109, 130, 464, 533, 551, 605, 632
CviQI GTAC 4 cut(s) 214, 301, 565, 637
DdeI CTNAG 3 cut(s) 606, 633, 663
DpnI GATC 4 cut(s) 45, 205, 285, 624
DpnII GATC 4 cut(s) 43, 203, 283, 622
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 292
Eco88I CYCGRG 1 cut(s) 233
EcoRII CCWGG 3 cut(s) 100, 495, 648
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 6 cut(s) 10, 87, 271, 296, 322, 619
FalI AAGNNNNNCTT 2 cut(s) 539, 571
FatI CATG 6 cut(s) 6, 83, 267, 292, 318, 615
Fnu4HI GCNGC 2 cut(s) 279, 705
FokI GGATG 5 cut(s) 269, 425, 479, 596, 665
Fsp4HI GCNGC 2 cut(s) 279, 705
GluI GCNGC 2 cut(s) 279, 705
GsaI CCCAGC 1 cut(s) 247
HgaI GACGC 1 cut(s) 146
Hin1II CATG 6 cut(s) 10, 87, 271, 296, 322, 619
HincII GTYRAC 2 cut(s) 139, 240
HindII GTYRAC 2 cut(s) 139, 240
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 1 cut(s) 406
HpaI GTTAAC 1 cut(s) 240
HphI GGTGA 2 cut(s) 53, 589
Hpy166II GTNNAC 4 cut(s) 139, 240, 567, 597
Hpy188I TCNGA 2 cut(s) 118, 225
Hpy188III TCNNGA 4 cut(s) 7, 198, 373, 508
Hpy8I GTNNAC 4 cut(s) 139, 240, 567, 597
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 3 cut(s) 218, 229, 300
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 4 cut(s) 24, 134, 185, 656
HpyF3I CTNAG 3 cut(s) 606, 633, 663
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 6 cut(s) 10, 87, 271, 296, 322, 619
KpnI GGTACC 1 cut(s) 304
KspAI GTTAAC 1 cut(s) 240
Kzo9I GATC 4 cut(s) 43, 203, 283, 622
Lsp1109I GCAGC 2 cut(s) 265, 691
LweI GCATC 2 cut(s) 247, 643
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 3 cut(s) 79, 434, 611
MalI GATC 4 cut(s) 45, 205, 285, 624
MboI GATC 4 cut(s) 43, 203, 283, 622
MboII GAAGA 2 cut(s) 83, 704
MhlI GDGCHC 2 cut(s) 234, 341
MluCI AATT 1 cut(s) 524
MseI TTAA 3 cut(s) 48, 239, 366
MslI CAYNNNNRTG 1 cut(s) 533
MspA1I CMGCKG 1 cut(s) 109
MspR9I CCNGG 3 cut(s) 102, 497, 650
MvaI CCWGG 3 cut(s) 102, 497, 650
MvnI CGCG 1 cut(s) 157
NcoI CCATGG 1 cut(s) 292
NdeII GATC 4 cut(s) 43, 203, 283, 622
NlaIII CATG 6 cut(s) 10, 87, 271, 296, 322, 619
NlaIV GGNNCC 2 cut(s) 98, 302
NmuCI GTSAC 2 cut(s) 79, 434
NspI RCATGY 1 cut(s) 87
NspV TTCGAA 1 cut(s) 124
PagI TCATGA 1 cut(s) 6
PfeI GAWTC 1 cut(s) 406
PflMI CCANNNNNTGG 1 cut(s) 293
PfoI TCCNGGA 1 cut(s) 495
PkrI GCNGC 2 cut(s) 280, 706
Psp6I CCWGG 3 cut(s) 100, 495, 648
PspFI CCCAGC 1 cut(s) 243
PspGI CCWGG 3 cut(s) 100, 495, 648
PspN4I GGNNCC 2 cut(s) 98, 302
PsrI GAACNNNNNNTAC 2 cut(s) 374, 406
PvuII CAGCTG 1 cut(s) 109
RsaI GTAC 4 cut(s) 215, 302, 566, 638
RsaNI GTAC 4 cut(s) 214, 301, 565, 637
RseI CAYNNNNRTG 1 cut(s) 533
SaqAI TTAA 3 cut(s) 48, 239, 366
SatI GCNGC 2 cut(s) 279, 705
Sau3AI GATC 4 cut(s) 43, 203, 283, 622
ScrFI CCNGG 3 cut(s) 102, 497, 650
SduI GDGCHC 2 cut(s) 234, 341
SfaNI GCATC 2 cut(s) 247, 643
SfuI TTCGAA 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 533
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 1 cut(s) 524
SsiI CCGC 1 cut(s) 155
StyD4I CCNGG 3 cut(s) 100, 495, 648
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 3 cut(s) 218, 229, 300
TaiI ACGT 1 cut(s) 372
TaqI TCGA 1 cut(s) 124
TasI AATT 1 cut(s) 524
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 3 cut(s) 48, 239, 366
Tru9I TTAA 3 cut(s) 48, 239, 366
TscAI CASTG 2 cut(s) 433, 574
TseFI GTSAC 2 cut(s) 79, 434
TseI GCWGC 2 cut(s) 278, 704
Tsp45I GTSAC 2 cut(s) 79, 434
TspDTI ATGAA 3 cut(s) 369, 463, 632
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 2 cut(s) 433, 574
Van91I CCANNNNNTGG 1 cut(s) 293
XceI RCATGY 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.