Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0014835

Physical Location & Seq

Genomic Coordinates Forward (+)

14330525 .. 14333813

Gene Structure 3289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG167500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGAACCCTACTGATATCAAAGATCAGGGAAGAGTACCCTGATAGAATGATGATGACTTTCTCAGTCTTCCCTTCCCCAAAAGTCTCAGACACTGTGGTTGAACCCTACAATGCCACCCTTTCTGTTCACCAATTAGTGGAAAATGCAGATGAGTGCATGGTCCTCGACAATGAAGCCCTCTATGATATCTGCTTCCGAACTCTCAAGCTCACAAATCCAAGTTTTGGTGATCTGAACCATTTGATCTCCACAACCATGAGTGGAGTCACATGCTGCCTCCGCTTCCCAGGACAACTCAACTCTGACCTCCGAAAACTTGCCGTGAATCTCATCCCCTTCCCACGCCTCCACTTCTTCATGGTTGGTTTTGCACCCTTGACCTCCCGCGGCTCCCAATTCTACCGTGCCCTCACCATCCCTGAGCTCACACAACAAATGTGGGACGCCAAGAACATGATGTGCGCCGCAGACCCCCGCCACGGCCGATACCTCACTGCCTCAGCCGTGTTCCGTGGCAAGATGAGCACAAAAGAAGTTGATGAACAAATGATCAACATACAGAACAAGAACTCCTCATACTTTGTGGAGTGGATCCCAAACAATGTCAAATCAAGTGTTTGTGACATTGCTCCAACCGGGTTGTCCATGTCCTCCACTTTCATGGGGAACTCGACCTCGATTCAAGAGATGTTTAGGCGTGTTTCAGAGCAATTCACAGTCATGTTCAGGAGGAAGGCTTTCTTGCATTGGTACACAGGAGAAGGTATGGATGAAATGGAGTTTACTGAGGCTGAGAGTAACATGAATGACTTGGTCTCAGAGTATCAACAATATCAAGATGCTGTTGCACAAGATGATGAGGAAGAGTATGAAGAGGAAGAGATGGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04145 ko04540 ko05130 map04145 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

298

Amino Acids

34.23

Weight (kDa)

4.7

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	2 - 65	7.3e-15	Tubulin/FtsZ family, GTPase domain
Tubulin_C	PF03953	115 - 236	5.6e-40	Tubulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014835)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g25230 pycom07g24800 pycom10g20570
rosa_multiflora	Rmu_ssc0000354.1_g000001
rosa_roxburghii	Rroxscaffold_1G00013720
rosa_samantha	Rh3BG132000 Rh3CG134200 Rh5AG129900 Rh5BG460900 Rh5CG140500 Rh5CG483200 Rh5DG130100 Rh5DG475900 Rh7AG016100 Rh7AG167500 Rh7BG170300 Rh7DG169400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	139, 227
AccII	CGCG	1 cut(s)	390
AciI	CCGC	5 cut(s)	283, 388, 390, 468, 478
AclWI	GGATC	2 cut(s)	589, 602
AcoI	YGGCCR	1 cut(s)	484
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	2 cut(s)	38, 755
AfiI	CCNNNNNNNGG	3 cut(s)	139, 227, 482
AgsI	TTSAA	2 cut(s)	104, 686
AjnI	CCWGG	1 cut(s)	289
AloI	GAACNNNNNNTCC	2 cut(s)	557, 589
AluBI	AGCT	2 cut(s)	211, 427
AluI	AGCT	2 cut(s)	211, 427
Alw21I	GWGCWC	2 cut(s)	429, 530
Alw26I	GTCTC	2 cut(s)	91, 823
AlwI	GGATC	2 cut(s)	589, 602
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	484
ApeKI	GCWGC	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	740
AspLEI	GCGC	1 cut(s)	467
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	640
AsuHPI	GGTGA	3 cut(s)	122, 242, 406
AvaII	GGWCC	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	412
BamHI	GGATCC	1 cut(s)	594
BanII	GRGCYC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	61
Bbv12I	GWGCWC	2 cut(s)	429, 530
BbvCI	CCTCAGC	1 cut(s)	502
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	2 cut(s)	425, 880
BceAI	ACGGC	3 cut(s)	308, 491, 499
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	552
BcnI	CCSGG	1 cut(s)	640
BcoDI	GTCTC	2 cut(s)	91, 823
BisI	GCNGC	3 cut(s)	277, 391, 468
BlsI	GCNGC	3 cut(s)	278, 392, 469
Bme1390I	CCNGG	2 cut(s)	291, 640
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	3 cut(s)	7, 394, 596
BmrFI	CCNGG	2 cut(s)	291, 640
BmsI	GCATC	1 cut(s)	832
BpiI	GAAGAC	1 cut(s)	61
Bpu10I	CCTNAGC	2 cut(s)	423, 502
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	640
BsaHI	GRCGYC	1 cut(s)	447
BsaI	GGTCTC	1 cut(s)	823
BsaJI	CCNNGG	4 cut(s)	289, 388, 481, 514
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 227, 482
Bse3DI	GCAATG	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	4 cut(s)	289, 388, 481, 514
BseGI	GGATG	3 cut(s)	333, 417, 778
BseLI	CCNNNNNNNGG	3 cut(s)	139, 227, 482
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	7 cut(s)	78, 102, 414, 516, 780, 786, 834
BseRI	GAGGAG	1 cut(s)	565
BseSI	GKGCMC	1 cut(s)	412
BseX3I	CGGCCG	1 cut(s)	484
BseXI	GCAGC	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	390
Bsh1285I	CGRYCG	1 cut(s)	487
BshFI	GGCC	1 cut(s)	486
BsiEI	CGRYCG	1 cut(s)	487
BsiHKAI	GWGCWC	2 cut(s)	429, 530
BsiSI	CCGG	1 cut(s)	639
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	3 cut(s)	139, 227, 482
BsmAI	GTCTC	2 cut(s)	91, 823
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	486
Bso31I	GGTCTC	1 cut(s)	823
Bsp1286I	GDGCHC	3 cut(s)	412, 429, 530
Bsp143I	GATC	5 cut(s)	24, 232, 246, 552, 594
BspACI	CCGC	5 cut(s)	283, 388, 390, 468, 478
BspANI	GGCC	1 cut(s)	486
BspCNI	CTCAG	7 cut(s)	77, 101, 415, 515, 781, 787, 833
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	3 cut(s)	7, 394, 596
BspPI	GGATC	2 cut(s)	589, 602
BspTNI	GGTCTC	1 cut(s)	823
BsrDI	GCAATG	1 cut(s)	627
BssECI	CCNNGG	4 cut(s)	289, 388, 481, 514
BssMI	GATC	5 cut(s)	24, 232, 246, 552, 594
BssNI	GRCGYC	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	3 cut(s)	97, 407, 721
Bst6I	CTCTTC	4 cut(s)	27, 861, 870, 876
BstACI	GRCGYC	1 cut(s)	447
BstDEI	CTNAG	7 cut(s)	64, 88, 423, 502, 789, 795, 820
BstDSI	CCRYGG	3 cut(s)	388, 481, 514
BstF5I	GGATG	3 cut(s)	333, 417, 778
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	5 cut(s)	27, 235, 249, 555, 597
BstMAI	GTCTC	2 cut(s)	91, 823
BstMBI	GATC	5 cut(s)	24, 232, 246, 552, 594
BstMCI	CGRYCG	1 cut(s)	487
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 525
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	276
BstSCI	CCNGG	2 cut(s)	289, 638
BstSLI	GKGCMC	1 cut(s)	412
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	263
BstV2I	GAAGAC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	594
BstXI	CCANNNNNNTGG	1 cut(s)	664
BstYI	RGATCY	1 cut(s)	594
BstZI	CGGCCG	1 cut(s)	484
BsuRI	GGCC	1 cut(s)	486
BtgI	CCRYGG	3 cut(s)	388, 481, 514
BtsCI	GGATG	3 cut(s)	333, 417, 778
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	2 cut(s)	93, 495
CaiI	CAGNNNCTG	1 cut(s)	95
CfoI	GCGC	1 cut(s)	467
Cfr13I	GGNCC	1 cut(s)	163
Cfr42I	CCGCGG	1 cut(s)	391
CseI	GACGC	1 cut(s)	455
Csp6I	GTAC	2 cut(s)	37, 754
CspCI	CAANNNNNGTGG	2 cut(s)	422, 457
CviAII	CATG	9 cut(s)	160, 259, 273, 361, 457, 649, 664, 724, 805
CviJI	RGCY	8 cut(s)	179, 211, 393, 427, 486, 506, 740, 794
CviKI_1	RGCY	8 cut(s)	179, 211, 393, 427, 486, 506, 740, 794
CviQI	GTAC	2 cut(s)	37, 754
DdeI	CTNAG	7 cut(s)	64, 88, 423, 502, 789, 795, 820
DpnI	GATC	5 cut(s)	26, 234, 248, 554, 596
DpnII	GATC	5 cut(s)	24, 232, 246, 552, 594
EaeI	YGGCCR	1 cut(s)	484
EagI	CGGCCG	1 cut(s)	484
Eam1104I	CTCTTC	4 cut(s)	27, 861, 870, 876
EarI	CTCTTC	4 cut(s)	27, 861, 870, 876
Ecl136II	GAGCTC	1 cut(s)	427
EclXI	CGGCCG	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	823
Eco32I	GATATC	2 cut(s)	18, 190
Eco47I	GGWCC	1 cut(s)	163
Eco52I	CGGCCG	1 cut(s)	484
Eco53kI	GAGCTC	1 cut(s)	427
EcoICRI	GAGCTC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	2 cut(s)	18, 190
EcoT38I	GRGCYC	1 cut(s)	429
FaeI	CATG	9 cut(s)	163, 262, 276, 364, 460, 652, 667, 727, 808
FalI	AAGNNNNNCTT	2 cut(s)	728, 760
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	9 cut(s)	159, 258, 272, 360, 456, 648, 663, 723, 804
FauI	CCCGC	2 cut(s)	395, 485
FbaI	TGATCA	1 cut(s)	552
Fnu4HI	GCNGC	3 cut(s)	277, 391, 468
FokI	GGATG	3 cut(s)	320, 404, 785
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	3 cut(s)	277, 391, 468
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	3 cut(s)	277, 391, 468
HaeIII	GGCC	1 cut(s)	486
HapII	CCGG	1 cut(s)	639
HgaI	GACGC	1 cut(s)	455
HhaI	GCGC	1 cut(s)	467
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	9 cut(s)	163, 262, 276, 364, 460, 652, 667, 727, 808
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HinfI	GANTC	3 cut(s)	267, 328, 682
HpaII	CCGG	1 cut(s)	639
HphI	GGTGA	3 cut(s)	122, 242, 406
Hpy166II	GTNNAC	3 cut(s)	130, 756, 786
Hpy188I	TCNGA	7 cut(s)	91, 200, 237, 307, 314, 709, 823
Hpy188III	TCNNGA	3 cut(s)	686, 730, 839
Hpy8I	GTNNAC	3 cut(s)	130, 756, 786
HpyAV	CCTTC	4 cut(s)	84, 349, 730, 758
HpyCH4III	ACNGT	3 cut(s)	97, 407, 721
HpyCH4V	TGCA	5 cut(s)	149, 159, 374, 748, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 525
HpyF3I	CTNAG	7 cut(s)	64, 88, 423, 502, 789, 795, 820
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	9 cut(s)	163, 262, 276, 364, 460, 652, 667, 727, 808
HspAI	GCGC	1 cut(s)	465
Ksp22I	TGATCA	1 cut(s)	552
KspI	CCGCGG	1 cut(s)	391
Kzo9I	GATC	5 cut(s)	24, 232, 246, 552, 594
LmnI	GCTCC	2 cut(s)	398, 637
LpnPI	CCDG	8 cut(s)	13, 54, 276, 303, 435, 652, 715, 744
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	832
MaeIII	GTNAC	3 cut(s)	268, 623, 800
MalI	GATC	5 cut(s)	26, 234, 248, 554, 596
MboI	GATC	5 cut(s)	24, 232, 246, 552, 594
MboII	GAAGA	6 cut(s)	44, 61, 349, 878, 887, 893
MflI	RGATCY	1 cut(s)	594
MhlI	GDGCHC	3 cut(s)	412, 429, 530
MluCI	AATT	3 cut(s)	134, 398, 713
MlyI	GAGTC	1 cut(s)	276
MmeI	TCCRAC	1 cut(s)	659
MroXI	GAANNNNTTC	1 cut(s)	740
MslI	CAYNNNNRTG	3 cut(s)	257, 662, 722
MspA1I	CMGCKG	1 cut(s)	390
MspI	CCGG	1 cut(s)	639
MspR9I	CCNGG	2 cut(s)	291, 640
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	282, 525
NciI	CCSGG	1 cut(s)	640
NdeII	GATC	5 cut(s)	24, 232, 246, 552, 594
NlaIII	CATG	9 cut(s)	163, 262, 276, 364, 460, 652, 667, 727, 808
NlaIV	GGNNCC	3 cut(s)	7, 394, 596
NmuCI	GTSAC	2 cut(s)	268, 623
NspI	RCATGY	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	740
PfeI	GAWTC	2 cut(s)	328, 682
PflFI	GACNNNGTC	1 cut(s)	815
PflMI	CCANNNNNTGG	2 cut(s)	139, 227
PkrI	GCNGC	3 cut(s)	278, 392, 469
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
Psp124BI	GAGCTC	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	3 cut(s)	7, 394, 596
PspPI	GGNCC	1 cut(s)	163
PsrI	GAACNNNNNNTAC	2 cut(s)	563, 595
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	594
PsyI	GACNNNGTC	1 cut(s)	815
RsaI	GTAC	2 cut(s)	38, 755
RsaNI	GTAC	2 cut(s)	37, 754
RseI	CAYNNNNRTG	3 cut(s)	257, 662, 722
SacI	GAGCTC	1 cut(s)	429
SacII	CCGCGG	1 cut(s)	391
SatI	GCNGC	3 cut(s)	277, 391, 468
Sau3AI	GATC	5 cut(s)	24, 232, 246, 552, 594
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	2 cut(s)	291, 640
SduI	GDGCHC	3 cut(s)	412, 429, 530
SetI	ASST	7 cut(s)	213, 312, 386, 429, 495, 680, 769
SfaNI	GCATC	1 cut(s)	832
Sfr303I	CCGCGG	1 cut(s)	391
SgrBI	CCGCGG	1 cut(s)	391
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	3 cut(s)	257, 662, 722
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	3 cut(s)	134, 398, 713
SsiI	CCGC	5 cut(s)	283, 388, 390, 468, 478
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	2 cut(s)	289, 638
TaaI	ACNGT	3 cut(s)	97, 407, 721
TaqI	TCGA	3 cut(s)	168, 674, 680
TasI	AATT	3 cut(s)	134, 398, 713
TauI	GCSGC	2 cut(s)	393, 470
TfiI	GAWTC	2 cut(s)	328, 682
TscAI	CASTG	2 cut(s)	100, 502
TseFI	GTSAC	2 cut(s)	268, 623
TseI	GCWGC	1 cut(s)	276
Tsp45I	GTSAC	2 cut(s)	268, 623
TspDTI	ATGAA	7 cut(s)	189, 349, 558, 652, 789, 821, 888
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	2 cut(s)	100, 502
Tth111I	GACNNNGTC	1 cut(s)	815
Van91I	CCANNNNNTGG	2 cut(s)	139, 227
VpaK11BI	GGWCC	1 cut(s)	163
XceI	RCATGY	1 cut(s)	276
XmnI	GAANNNNTTC	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.