Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0014835

Physical Location & Seq

Genomic Coordinates Forward (+)

23458094 .. 23459421

Gene Structure 1328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g20570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTTTTCTCCCATTTTGATAGTGTCTGATACGGTTGTGGAACCATACAATGCCACCCTTTCCGTCCATCAGCTTGTCGAAAATGCTGATGAATTTGGGGATCTTAATCATCTCATCTCTGCTACCATGAGCGGTGTCACCTGTTGTCTTCGGTTCCCTGGACAGTTGAACTCTGACCTACGGAAGCTTGCAGTTAACCTTATCCCATTCCCGCGGTTGCACTTCTTTATGGTTGGGTTTGCACCCCTAACTTCAAGAGGATCACAGCAGTACCGCGCTCTGTCTGTGCCCGACTTGACCCAGCAGATGTGGGATGCCAAAAACATGATGTGTGCCGCTGACCCACGCCATGGACGTTACCTTACTGCGTCTGCCATGTTCCATGGTAAGATGAGCACCAAAGAAGTTGATGAACAGATGATTAACGTCCAGAACAAAAACTCCTCATATTTTGTTGAGTGGATTCCCAATAACGTTAAGTCCAGCGTGTGTGACATCCCACCCAAGGGTCTAAAGATGGCATCCACTTTTATTGGGAATTCGACTTCAATTCAGGAAATGTTCAGGAGAGTTAGCGAGCAGTTCACTGCTATGTTCAGGCGAAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAGATGGAGTTCACCGAGGCCGAGAGTAACATGAACGATCTAGTTGCTGAGTACCAACAATACGAGGATGCAATTATCGAAGAGGAGTACGAAGAGGAGGAAGAGGAAGAAAAGGAGGTTGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04145 ko04540 ko05130 map04145 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

257

Amino Acids

29.22

Weight (kDa)

4.72

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014835)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g25230 pycom07g24800 pycom10g20570
rosa_multiflora	Rmu_ssc0000354.1_g000001
rosa_roxburghii	Rroxscaffold_1G00013720
rosa_samantha	Rh3BG132000 Rh3CG134200 Rh5AG129900 Rh5BG460900 Rh5CG140500 Rh5CG483200 Rh5DG130100 Rh5DG475900 Rh7AG016100 Rh7AG167500 Rh7BG170300 Rh7DG169400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccBSI	CCGCTC	1 cut(s)	132
AccII	CGCG	2 cut(s)	214, 276
AciI	CCGC	5 cut(s)	132, 212, 214, 274, 336
AclI	AACGTT	1 cut(s)	474
AclWI	GGATC	2 cut(s)	108, 268
AcsI	RAATTY	2 cut(s)	92, 538
AfaI	GTAC	4 cut(s)	272, 623, 695, 731
AfiI	CCNNNNNNNGG	3 cut(s)	350, 505, 506
AgsI	TTSAA	3 cut(s)	169, 255, 549
AjnI	CCWGG	1 cut(s)	157
AjuI	GAANNNNNNNTTGG	1 cut(s)	744
AloI	GAACNNNNNNTCC	2 cut(s)	425, 457
AluBI	AGCT	2 cut(s)	73, 187
AluI	AGCT	2 cut(s)	73, 187
Alw21I	GWGCWC	1 cut(s)	398
AlwI	GGATC	2 cut(s)	108, 268
AoxI	GGCC	1 cut(s)	660
ApoI	RAATTY	2 cut(s)	92, 538
AspLEI	GCGC	1 cut(s)	278
AsuHPI	GGTGA	3 cut(s)	130, 641, 646
BaeGI	GKGCMC	1 cut(s)	291
BaeI	ACNNNNGTAYC	6 cut(s)	21, 54, 254, 287, 613, 646
BbsI	GAAGAC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	398
BccI	CCATC	3 cut(s)	75, 511, 640
BcgI	CGANNNNNNTGC	2 cut(s)	668, 702
BciT130I	CCWGG	1 cut(s)	159
BfaI	CTAG	1 cut(s)	683
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	42, 155
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	3 cut(s)	304, 530, 700
BpiI	GAAGAC	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	6 cut(s)	157, 212, 349, 382, 504, 657
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 505, 506
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	6 cut(s)	157, 212, 349, 382, 504, 657
BseGI	GGATG	5 cut(s)	319, 495, 521, 646, 715
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	3 cut(s)	350, 505, 506
BseMII	CTCAG	1 cut(s)	681
BseRI	GAGGAG	3 cut(s)	433, 740, 752
BseSI	GKGCMC	1 cut(s)	291
BseYI	CCCAGC	1 cut(s)	300
Bsh1236I	CGCG	2 cut(s)	214, 276
BshFI	GGCC	1 cut(s)	662
BsiHKAI	GWGCWC	1 cut(s)	398
BslI	CCNNNNNNNGG	3 cut(s)	350, 505, 506
BsnI	GGCC	1 cut(s)	662
Bsp1286I	GDGCHC	2 cut(s)	291, 398
Bsp143I	GATC	3 cut(s)	100, 260, 679
Bsp19I	CCATGG	2 cut(s)	349, 382
BspACI	CCGC	5 cut(s)	132, 212, 214, 274, 336
BspANI	GGCC	1 cut(s)	662
BspCNI	CTCAG	1 cut(s)	682
BspFNI	CGCG	2 cut(s)	214, 276
BspLI	GGNNCC	2 cut(s)	42, 155
BspPI	GGATC	2 cut(s)	108, 268
BsrBI	CCGCTC	1 cut(s)	132
BssECI	CCNNGG	6 cut(s)	157, 212, 349, 382, 504, 657
BssMI	GATC	3 cut(s)	100, 260, 679
BssT1I	CCWWGG	3 cut(s)	349, 382, 504
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	34, 165
Bst6I	CTCTTC	3 cut(s)	717, 729, 738
BstC8I	GCNNGC	2 cut(s)	189, 578
BstDEI	CTNAG	1 cut(s)	690
BstDSI	CCRYGG	3 cut(s)	212, 349, 382
BstF5I	GGATG	5 cut(s)	319, 495, 521, 646, 715
BstFNI	CGCG	2 cut(s)	214, 276
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	3 cut(s)	103, 263, 682
BstMBI	GATC	3 cut(s)	100, 260, 679
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	291
BstUI	CGCG	2 cut(s)	214, 276
BstV2I	GAAGAC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	662
BtgI	CCRYGG	3 cut(s)	212, 349, 382
BtsCI	GGATG	5 cut(s)	319, 495, 521, 646, 715
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	1 cut(s)	585
Cac8I	GCNNGC	2 cut(s)	189, 578
CfoI	GCGC	1 cut(s)	278
Cfr42I	CCGCGG	1 cut(s)	215
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	4 cut(s)	271, 622, 694, 730
CspCI	CAANNNNNGTGG	2 cut(s)	514, 549
CviAII	CATG	6 cut(s)	127, 325, 350, 376, 383, 673
CviJI	RGCY	4 cut(s)	73, 187, 608, 662
CviKI_1	RGCY	4 cut(s)	73, 187, 608, 662
CviQI	GTAC	4 cut(s)	271, 622, 694, 730
DdeI	CTNAG	1 cut(s)	690
DpnI	GATC	3 cut(s)	102, 262, 681
DpnII	GATC	3 cut(s)	100, 260, 679
Eam1104I	CTCTTC	3 cut(s)	717, 729, 738
EarI	CTCTTC	3 cut(s)	717, 729, 738
Eco130I	CCWWGG	3 cut(s)	349, 382, 504
EcoRI	GAATTC	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	3 cut(s)	349, 382, 504
ErhI	CCWWGG	3 cut(s)	349, 382, 504
FaeI	CATG	6 cut(s)	130, 328, 353, 379, 386, 676
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FatI	CATG	6 cut(s)	126, 324, 349, 375, 382, 672
FauI	CCCGC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	5 cut(s)	326, 482, 508, 653, 722
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	1 cut(s)	683
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	1 cut(s)	336
GsaI	CCCAGC	1 cut(s)	304
HaeIII	GGCC	1 cut(s)	662
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	6 cut(s)	130, 328, 353, 379, 386, 676
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	463
HpaI	GTTAAC	1 cut(s)	196
HphI	GGTGA	3 cut(s)	130, 641, 646
Hpy166II	GTNNAC	4 cut(s)	196, 585, 624, 654
Hpy188I	TCNGA	2 cut(s)	28, 175
Hpy188III	TCNNGA	4 cut(s)	255, 430, 554, 565
Hpy8I	GTNNAC	4 cut(s)	196, 585, 624, 654
HpyAV	CCTTC	1 cut(s)	626
HpyCH4III	ACNGT	2 cut(s)	34, 165
HpyCH4IV	ACGT	3 cut(s)	355, 426, 474
HpyCH4V	TGCA	5 cut(s)	191, 220, 242, 616, 713
HpyF3I	CTNAG	1 cut(s)	690
HpySE526I	ACGT	3 cut(s)	355, 426, 474
Hsp92II	CATG	6 cut(s)	130, 328, 353, 379, 386, 676
HspAI	GCGC	1 cut(s)	276
KspAI	GTTAAC	1 cut(s)	196
KspI	CCGCGG	1 cut(s)	215
Kzo9I	GATC	3 cut(s)	100, 260, 679
LweI	GCATC	3 cut(s)	304, 530, 700
MaeI	CTAG	1 cut(s)	683
MaeII	ACGT	3 cut(s)	355, 426, 474
MaeIII	GTNAC	4 cut(s)	136, 356, 491, 668
MalI	GATC	3 cut(s)	102, 262, 681
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	3 cut(s)	100, 260, 679
MboII	GAAGA	5 cut(s)	140, 734, 746, 755, 761
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	2 cut(s)	291, 398
MluCI	AATT	4 cut(s)	92, 538, 549, 714
MnlI	CCTC	9 cut(s)	251, 454, 652, 700, 718, 730, 733, 739, 751
MseI	TTAA	4 cut(s)	105, 195, 423, 477
MslI	CAYNNNNRTG	1 cut(s)	590
MspA1I	CMGCKG	2 cut(s)	214, 338
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	2 cut(s)	214, 276
NcoI	CCATGG	2 cut(s)	349, 382
NdeII	GATC	3 cut(s)	100, 260, 679
NlaIII	CATG	6 cut(s)	130, 328, 353, 379, 386, 676
NlaIV	GGNNCC	2 cut(s)	42, 155
NmeAIII	GCCGAG	1 cut(s)	688
NmuCI	GTSAC	2 cut(s)	136, 491
PcsI	WCGNNNNNNNCGW	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	463
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	337
Psp1406I	AACGTT	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	157
PspFI	CCCAGC	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	42, 155
PsuI	RGATCY	1 cut(s)	100
RsaI	GTAC	4 cut(s)	272, 623, 695, 731
RsaNI	GTAC	4 cut(s)	271, 622, 694, 730
RseI	CAYNNNNRTG	1 cut(s)	590
SacII	CCGCGG	1 cut(s)	215
SaqAI	TTAA	4 cut(s)	105, 195, 423, 477
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	3 cut(s)	100, 260, 679
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	2 cut(s)	291, 398
SfaNI	GCATC	3 cut(s)	304, 530, 700
Sfr303I	CCGCGG	1 cut(s)	215
SgrBI	CCGCGG	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	590
Sse9I	AATT	4 cut(s)	92, 538, 549, 714
SsiI	CCGC	5 cut(s)	132, 212, 214, 274, 336
SspMI	CTAG	1 cut(s)	683
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	3 cut(s)	349, 382, 504
TaaI	ACNGT	2 cut(s)	34, 165
TaiI	ACGT	3 cut(s)	358, 429, 477
TaqI	TCGA	3 cut(s)	78, 542, 720
TasI	AATT	4 cut(s)	92, 538, 549, 714
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	4 cut(s)	105, 195, 423, 477
Tru9I	TTAA	4 cut(s)	105, 195, 423, 477
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	2 cut(s)	136, 491
Tsp45I	GTSAC	2 cut(s)	136, 491
TspDTI	ATGAA	3 cut(s)	105, 426, 689
TspGWI	ACGGA	2 cut(s)	52, 196
TspRI	CASTG	1 cut(s)	592
Van91I	CCANNNNNTGG	1 cut(s)	350
XapI	RAATTY	2 cut(s)	92, 538
XspI	CTAG	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.