Rh5DG130100

Tubulin/FtsZ family, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0014835
Physical Location & Seq
Reverse (-)
12547418 .. 12550097
2680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG130100.1

Sequence Viewer

Length: 711 bp
ATGCTCATGATACATATTTTTTGCATTTTTATTGTAGTTGGTGATCTTAACCACCTAATCTCTGCCACAATGAGTGGTGTCACATGCTGTCTTCGGTTCCCTGGACAGCTGAACTCTGACCTTCGAAAGCTTGCAGTCAACCTCATTCCTTTTCCGCGTCTCCATTTCTTTATGGTTGGGTTTGCACCCCTGACCTCAAGAGGATCACAGCAGTACCGTTCTCTGACCGTGCCCGAGTTAACCCAGCAGATGTGGGATGCCAAAAACATGATGTGTGCTGCTGATCCACGCCATGGACGGTACCTTACTGCTTCTGCCATGTTCCGTGGTAAAATGAGCACTAAAGAAGTTGATGAACAGATGATTAACGTCCAGAACAAGAACTCCTCATACTTTGTTGAGTGGATTCCAAATAATGTCAAGTCCAGTGTGTGTGACATCCCCCCAAAGGGTTTGGCAATGGCTTCCACTTTCATTGGGAACTCAACTTCCATCCAGGAAATGTTCAGGAGGGTTAGTGAGCAATTCACAGCTATGTTCAGGCGAAAGGCTTTCTTACATTGGTACACTGGGGAGGGAATGGATGAGATGGAGTTCACTGAGGCTGAGAGTAACATGAATGATCTGGTGGCTGAGTACCAGCAATACCAGGATGCAACTGCTGAGTATGAGGAGGAGTATGAGGAGGAGGAAGAGGAGGTTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04145 ko04540 ko05130 map04145 map04540 map05130
Pfam Domains
Protein Families
Tubulin Tubulin_C

Protein Analysis

236

Amino Acids

27.09

Weight (kDa)

4.94

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin_C PF03953 52 - 173 1.2e-40 Tubulin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 300
AccB7I CCANNNNNTGG 1 cut(s) 293
AccII CGCG 1 cut(s) 157
AciI CCGC 1 cut(s) 155
AclWI GGATC 2 cut(s) 211, 278
AfaI GTAC 4 cut(s) 215, 302, 566, 638
AfiI CCNNNNNNNGG 3 cut(s) 293, 448, 449
AjnI CCWGG 3 cut(s) 100, 495, 648
AloI GAACNNNNNNTCC 4 cut(s) 368, 400, 473, 505
AluBI AGCT 3 cut(s) 109, 130, 533
AluI AGCT 3 cut(s) 109, 130, 533
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 2 cut(s) 211, 278
Ama87I CYCGRG 1 cut(s) 233
ApeKI GCWGC 2 cut(s) 278, 704
Asp718I GGTACC 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 53
AsuII TTCGAA 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 234
BaeI ACNNNNGTAYC 2 cut(s) 197, 230
BanI GGYRCC 1 cut(s) 300
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 2 cut(s) 265, 691
BccI CCATC 2 cut(s) 500, 583
BciT130I CCWGG 3 cut(s) 102, 497, 650
BcoDI GTCTC 1 cut(s) 164
BisI GCNGC 2 cut(s) 279, 705
BlsI GCNGC 2 cut(s) 280, 706
Bme1390I CCNGG 3 cut(s) 102, 497, 650
BmeT110I CYCGRG 1 cut(s) 233
BmiI GGNNCC 2 cut(s) 98, 302
BmrFI CCNGG 3 cut(s) 102, 497, 650
BmrI ACTGGG 1 cut(s) 579
BmsI GCATC 2 cut(s) 247, 643
BmuI ACTGGG 1 cut(s) 579
BpiI GAAGAC 1 cut(s) 83
Bpu14I TTCGAA 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 181
BsaJI CCNNGG 3 cut(s) 100, 292, 325
BsaXI ACNNNNNCTCC 4 cut(s) 368, 398, 502, 532
Bsc4I CCNNNNNNNGG 3 cut(s) 293, 448, 449
Bse1I ACTGG 2 cut(s) 426, 574
Bse3DI GCAATG 1 cut(s) 465
BseBI CCWGG 3 cut(s) 102, 497, 650
BseDI CCNNGG 3 cut(s) 100, 292, 325
BseGI GGATG 5 cut(s) 262, 438, 492, 589, 658
BseLI CCNNNNNNNGG 3 cut(s) 293, 448, 449
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 4 cut(s) 591, 597, 624, 654
BseNI ACTGG 2 cut(s) 426, 574
BseRI GAGGAG 6 cut(s) 376, 686, 689, 698, 701, 710
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 2 cut(s) 265, 691
BseYI CCCAGC 1 cut(s) 243
Bsh1236I CGCG 1 cut(s) 157
BshNI GGYRCC 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 341
BsiHKCI CYCGRG 1 cut(s) 233
BslI CCNNNNNNNGG 3 cut(s) 293, 448, 449
BsmAI GTCTC 1 cut(s) 164
BsmBI CGTCTC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 233
Bsp119I TTCGAA 1 cut(s) 124
Bsp1286I GDGCHC 2 cut(s) 234, 341
Bsp143I GATC 4 cut(s) 43, 203, 283, 622
Bsp19I CCATGG 1 cut(s) 292
BspACI CCGC 1 cut(s) 155
BspCNI CTCAG 4 cut(s) 592, 598, 625, 655
BspFNI CGCG 1 cut(s) 157
BspHI TCATGA 1 cut(s) 6
BspLI GGNNCC 2 cut(s) 98, 302
BspPI GGATC 2 cut(s) 211, 278
BspT104I TTCGAA 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 465
BsrI ACTGG 2 cut(s) 426, 574
BssECI CCNNGG 3 cut(s) 100, 292, 325
BssMI GATC 4 cut(s) 43, 203, 283, 622
BssT1I CCWWGG 1 cut(s) 292
Bst2UI CCWGG 3 cut(s) 102, 497, 650
Bst4CI ACNGT 3 cut(s) 218, 229, 300
Bst6I CTCTTC 1 cut(s) 687
BstBI TTCGAA 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 4 cut(s) 600, 606, 633, 663
BstDSI CCRYGG 2 cut(s) 292, 325
BstF5I GGATG 5 cut(s) 262, 438, 492, 589, 658
BstFNI CGCG 1 cut(s) 157
BstKTI GATC 4 cut(s) 46, 206, 286, 625
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 4 cut(s) 43, 203, 283, 622
BstNI CCWGG 3 cut(s) 102, 497, 650
BstNSI RCATGY 1 cut(s) 87
BstSCI CCNGG 3 cut(s) 100, 495, 648
BstSLI GKGCMC 1 cut(s) 234
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 265, 691
BstV2I GAAGAC 1 cut(s) 83
BtgI CCRYGG 2 cut(s) 292, 325
BtsCI GGATG 5 cut(s) 262, 438, 492, 589, 658
BtsIMutI CAGTG 3 cut(s) 433, 567, 597
Cac8I GCNNGC 1 cut(s) 132
CciI TCATGA 1 cut(s) 6
CseI GACGC 1 cut(s) 146
Csp6I GTAC 4 cut(s) 214, 301, 565, 637
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviAII CATG 6 cut(s) 7, 84, 268, 293, 319, 616
CviJI RGCY 7 cut(s) 109, 130, 464, 533, 551, 605, 632
CviKI_1 RGCY 7 cut(s) 109, 130, 464, 533, 551, 605, 632
CviQI GTAC 4 cut(s) 214, 301, 565, 637
DdeI CTNAG 4 cut(s) 600, 606, 633, 663
DpnI GATC 4 cut(s) 45, 205, 285, 624
DpnII GATC 4 cut(s) 43, 203, 283, 622
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 292
Eco88I CYCGRG 1 cut(s) 233
EcoRII CCWGG 3 cut(s) 100, 495, 648
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 6 cut(s) 10, 87, 271, 296, 322, 619
FalI AAGNNNNNCTT 2 cut(s) 539, 571
FatI CATG 6 cut(s) 6, 83, 267, 292, 318, 615
Fnu4HI GCNGC 2 cut(s) 279, 705
FokI GGATG 5 cut(s) 269, 425, 479, 596, 665
Fsp4HI GCNGC 2 cut(s) 279, 705
GluI GCNGC 2 cut(s) 279, 705
GsaI CCCAGC 1 cut(s) 247
HgaI GACGC 1 cut(s) 146
Hin1II CATG 6 cut(s) 10, 87, 271, 296, 322, 619
HincII GTYRAC 2 cut(s) 139, 240
HindII GTYRAC 2 cut(s) 139, 240
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 1 cut(s) 406
HpaI GTTAAC 1 cut(s) 240
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 4 cut(s) 139, 240, 567, 597
Hpy188I TCNGA 2 cut(s) 118, 225
Hpy188III TCNNGA 4 cut(s) 7, 198, 373, 508
Hpy8I GTNNAC 4 cut(s) 139, 240, 567, 597
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 3 cut(s) 218, 229, 300
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 4 cut(s) 24, 134, 185, 656
HpyF3I CTNAG 4 cut(s) 600, 606, 633, 663
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 6 cut(s) 10, 87, 271, 296, 322, 619
KpnI GGTACC 1 cut(s) 304
KspAI GTTAAC 1 cut(s) 240
Kzo9I GATC 4 cut(s) 43, 203, 283, 622
Lsp1109I GCAGC 2 cut(s) 265, 691
LweI GCATC 2 cut(s) 247, 643
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 3 cut(s) 79, 434, 611
MalI GATC 4 cut(s) 45, 205, 285, 624
MboI GATC 4 cut(s) 43, 203, 283, 622
MboII GAAGA 2 cut(s) 83, 704
MhlI GDGCHC 2 cut(s) 234, 341
MluCI AATT 1 cut(s) 524
MseI TTAA 3 cut(s) 48, 239, 366
MslI CAYNNNNRTG 1 cut(s) 533
MspA1I CMGCKG 1 cut(s) 109
MspR9I CCNGG 3 cut(s) 102, 497, 650
MvaI CCWGG 3 cut(s) 102, 497, 650
MvnI CGCG 1 cut(s) 157
NcoI CCATGG 1 cut(s) 292
NdeII GATC 4 cut(s) 43, 203, 283, 622
NlaIII CATG 6 cut(s) 10, 87, 271, 296, 322, 619
NlaIV GGNNCC 2 cut(s) 98, 302
NmuCI GTSAC 2 cut(s) 79, 434
NspI RCATGY 1 cut(s) 87
NspV TTCGAA 1 cut(s) 124
PagI TCATGA 1 cut(s) 6
PfeI GAWTC 1 cut(s) 406
PflMI CCANNNNNTGG 1 cut(s) 293
PfoI TCCNGGA 1 cut(s) 495
PkrI GCNGC 2 cut(s) 280, 706
Psp6I CCWGG 3 cut(s) 100, 495, 648
PspFI CCCAGC 1 cut(s) 243
PspGI CCWGG 3 cut(s) 100, 495, 648
PspN4I GGNNCC 2 cut(s) 98, 302
PsrI GAACNNNNNNTAC 2 cut(s) 374, 406
PvuII CAGCTG 1 cut(s) 109
RsaI GTAC 4 cut(s) 215, 302, 566, 638
RsaNI GTAC 4 cut(s) 214, 301, 565, 637
RseI CAYNNNNRTG 1 cut(s) 533
SaqAI TTAA 3 cut(s) 48, 239, 366
SatI GCNGC 2 cut(s) 279, 705
Sau3AI GATC 4 cut(s) 43, 203, 283, 622
ScrFI CCNGG 3 cut(s) 102, 497, 650
SduI GDGCHC 2 cut(s) 234, 341
SfaNI GCATC 2 cut(s) 247, 643
SfuI TTCGAA 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 533
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 1 cut(s) 524
SsiI CCGC 1 cut(s) 155
StyD4I CCNGG 3 cut(s) 100, 495, 648
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 3 cut(s) 218, 229, 300
TaiI ACGT 1 cut(s) 372
TaqI TCGA 1 cut(s) 124
TasI AATT 1 cut(s) 524
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 3 cut(s) 48, 239, 366
Tru9I TTAA 3 cut(s) 48, 239, 366
TscAI CASTG 3 cut(s) 433, 574, 604
TseFI GTSAC 2 cut(s) 79, 434
TseI GCWGC 2 cut(s) 278, 704
Tsp45I GTSAC 2 cut(s) 79, 434
TspDTI ATGAA 3 cut(s) 369, 463, 632
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 3 cut(s) 433, 574, 604
Van91I CCANNNNNTGG 1 cut(s) 293
XceI RCATGY 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.